Wall clock time and date at job start Mon Mar 30 2020 03:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47266 * 2 1 4 4 C 1.47186 * 110.99859 * 208.50288 * 3 2 1 5 5 C 1.52981 * 108.73394 * 305.63632 * 4 3 2 6 6 C 1.52996 * 109.37788 * 189.53840 * 5 4 3 7 7 C 1.52993 * 109.28343 * 69.82018 * 5 4 3 8 8 N 1.46013 * 110.03755 * 309.70753 * 5 4 3 9 9 C 1.46504 * 118.53645 * 198.18360 * 8 5 4 10 10 C 1.33713 * 122.92737 * 18.16245 * 8 5 4 11 11 O 1.21290 * 118.62293 * 178.29386 * 10 8 5 12 12 C 1.46898 * 110.99654 * 85.61408 * 3 2 1 13 13 H 1.09002 * 109.29982 * 193.16694 * 12 3 2 14 14 C 1.50694 * 109.38736 * 312.90801 * 12 3 2 15 15 H 1.08008 * 119.99698 * 84.86877 * 14 12 3 16 16 C 1.37880 * 120.00658 * 264.87043 * 14 12 3 17 17 N 1.31518 * 119.99194 * 357.86395 * 16 14 12 18 18 Si 1.86791 * 120.00527 * 177.86867 * 16 14 12 19 19 H 1.48504 * 109.47002 * 59.99755 * 18 16 14 20 20 H 1.48500 * 109.47101 * 300.00200 * 18 16 14 21 21 H 1.48498 * 109.47275 * 179.97438 * 18 16 14 22 22 H 1.09000 * 109.47128 * 174.72314 * 1 2 3 23 23 H 1.09000 * 109.47201 * 294.72891 * 1 2 3 24 24 H 1.09005 * 109.46825 * 54.72623 * 1 2 3 25 25 H 1.09007 * 109.46915 * 240.00363 * 2 1 3 26 26 H 1.09000 * 109.46898 * 120.00389 * 2 1 3 27 27 H 1.09004 * 109.59672 * 185.85912 * 4 3 2 28 28 H 1.09008 * 109.71863 * 65.48235 * 4 3 2 29 29 H 1.08997 * 109.47262 * 180.58277 * 6 5 4 30 30 H 1.09005 * 109.46637 * 300.57592 * 6 5 4 31 31 H 1.08994 * 109.47914 * 60.57357 * 6 5 4 32 32 H 1.08994 * 109.47512 * 275.65950 * 7 5 4 33 33 H 1.09002 * 109.47028 * 35.65960 * 7 5 4 34 34 H 1.09004 * 109.47040 * 155.65805 * 7 5 4 35 35 H 1.09001 * 109.47195 * 179.97438 * 9 8 5 36 36 H 1.09002 * 109.47023 * 299.98200 * 9 8 5 37 37 H 1.08995 * 109.47316 * 59.97686 * 9 8 5 38 38 H 0.96994 * 120.00265 * 5.95338 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3340 1.4797 -0.6557 5 6 4.2904 0.4924 0.0158 6 6 5.7136 0.7424 -0.4872 7 6 3.8711 -0.9362 -0.3363 8 7 4.2516 0.6653 1.4651 9 6 5.3546 0.1257 2.2641 10 6 3.2544 1.2946 2.0955 11 8 3.2858 1.3664 3.3059 12 6 2.0963 1.9162 1.3674 13 1 2.2324 2.9969 1.3270 14 6 0.8175 1.6001 2.0992 15 1 0.6958 0.6434 2.5855 16 6 -0.1974 2.5322 2.1481 17 7 -0.0333 3.7127 1.5920 18 14 -1.8053 2.1183 3.0040 19 1 -1.5396 1.8022 4.4304 20 1 -2.4290 0.9431 2.3444 21 1 -2.7253 3.2809 2.9181 22 1 -0.3633 -1.0233 -0.0945 23 1 -0.3633 0.4299 0.9334 24 1 -0.3633 0.5935 -0.8390 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 3.7223 2.4929 -0.5518 28 1 3.2363 1.2324 -1.7129 29 1 6.3948 0.0329 -0.0175 30 1 5.7443 0.6137 -1.5692 31 1 6.0155 1.7585 -0.2335 32 1 3.0898 -1.2649 0.3488 33 1 3.4929 -0.9624 -1.3583 34 1 4.7321 -1.5992 -0.2505 35 1 5.1766 0.3367 3.3186 36 1 5.4181 -0.9521 2.1148 37 1 6.2900 0.5912 1.9535 38 1 0.7656 3.8979 1.0740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220400261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:02 Heat of formation + Delta-G solvation = -22.193492 kcal Electronic energy + Delta-G solvation = -19375.699952 eV Core-core repulsion = 16639.516312 eV Total energy + Delta-G solvation = -2736.183640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17398 -38.79546 -37.31256 -34.59008 -33.05596 -32.05441 -29.22727 -28.69244 -27.78882 -25.89985 -24.41608 -22.98248 -21.95980 -19.54108 -18.76400 -17.85798 -17.36331 -16.69972 -16.11261 -15.84253 -15.63945 -15.14663 -14.79475 -14.38118 -14.22786 -13.79709 -13.45492 -13.23404 -13.12363 -13.05010 -12.86714 -12.74066 -12.60551 -12.45603 -12.24740 -11.95954 -11.89144 -11.74785 -11.29458 -11.01071 -10.74977 -10.42630 -9.67975 -8.84060 -8.60755 -6.25254 1.51657 1.58480 1.73890 1.78282 2.05451 2.56716 3.02232 3.42750 3.73060 3.84747 3.94160 4.02467 4.30861 4.44286 4.47709 4.53708 4.57927 4.70337 4.75182 4.78811 4.81019 4.85982 4.92237 4.96357 4.99083 5.09391 5.16461 5.33886 5.37757 5.53238 5.67833 5.87634 6.07732 6.27254 6.45160 6.61860 6.67612 7.29830 7.46570 8.79364 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.009874 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.611137 B = 2834.914090 C = 3155.136047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.074 3.926 3 N -0.534 5.534 4 C 0.037 3.963 5 C 0.127 3.873 6 C -0.143 4.143 7 C -0.170 4.170 8 N -0.607 5.607 9 C 0.072 3.928 10 C 0.485 3.515 11 O -0.598 6.598 12 C 0.188 3.812 13 H 0.047 0.953 14 C -0.556 4.556 15 H 0.035 0.965 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 1.099 2.901 19 H -0.284 1.284 20 H -0.259 1.259 21 H -0.280 1.280 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 -9.470 -8.347 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.053 4.053 3 N -0.257 5.257 4 C -0.091 4.091 5 C 0.041 3.959 6 C -0.201 4.201 7 C -0.227 4.227 8 N -0.341 5.341 9 C -0.070 4.070 10 C 0.274 3.726 11 O -0.477 6.477 12 C 0.078 3.922 13 H 0.064 0.936 14 C -0.595 4.595 15 H 0.053 0.947 16 C -0.207 4.207 17 N -0.559 5.559 18 Si 0.921 3.079 19 H -0.210 1.210 20 H -0.183 1.183 21 H -0.205 1.205 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.732 -8.500 -7.573 13.762 hybrid contribution 2.099 -0.681 0.426 2.247 sum 9.831 -9.181 -7.147 15.232 Atomic orbital electron populations 1.22205 0.96302 0.99692 1.03427 1.22335 0.95924 0.88073 0.98919 1.63011 1.24014 1.21088 1.17610 1.22870 0.87923 0.98326 1.00022 1.21390 0.98865 0.97308 0.78294 1.22092 0.92818 1.02083 1.03129 1.22858 1.02378 0.94586 1.02899 1.47835 1.21812 1.56280 1.08126 1.21717 0.89588 0.99254 0.96470 1.22300 0.84306 0.77503 0.88514 1.90506 1.79064 1.61263 1.16913 1.19448 0.91521 0.95089 0.86106 0.93588 1.21318 0.99612 1.03391 1.35180 0.94687 1.26925 1.05097 0.92226 0.96470 1.70860 1.30461 1.21966 1.32624 0.83210 0.72464 0.76599 0.75595 1.21002 1.18313 1.20537 0.92795 0.91378 0.94094 0.89005 0.96590 0.91985 0.86682 0.90717 0.88522 0.92993 0.92624 0.89231 0.90926 0.92619 0.90850 0.90071 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.43 9.76 71.98 0.70 -5.73 16 2 C 0.07 2.82 3.30 86.30 0.28 3.11 16 3 N -0.53 -22.40 4.85 -879.89 -4.26 -26.66 16 4 C 0.04 1.18 4.85 86.24 0.42 1.60 16 5 C 0.13 3.50 0.77 3.69 0.00 3.51 16 6 C -0.14 -2.77 7.63 71.98 0.55 -2.22 16 7 C -0.17 -3.98 7.19 71.98 0.52 -3.46 16 8 N -0.61 -22.15 2.63 -802.64 -2.11 -24.26 16 9 C 0.07 2.18 9.49 127.77 1.21 3.39 16 10 C 0.49 23.76 6.20 87.68 0.54 24.30 16 11 O -0.60 -34.18 15.51 -3.06 -0.05 -34.23 16 12 C 0.19 9.66 2.35 43.28 0.10 9.76 16 13 H 0.05 2.68 6.25 -2.39 -0.01 2.67 16 14 C -0.56 -31.37 4.36 25.60 0.11 -31.25 16 15 H 0.03 2.06 7.51 -2.91 -0.02 2.04 16 16 C -0.01 -0.34 5.04 84.65 0.43 0.09 16 17 N -0.92 -55.92 13.61 21.45 0.29 -55.63 16 18 Si 1.10 51.20 29.21 68.60 2.00 53.21 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 3.26 3.80 -2.39 -0.01 3.25 16 24 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.09 2.75 5.23 -2.38 -0.01 2.74 16 26 H 0.02 0.68 5.00 -2.39 -0.01 0.66 16 27 H 0.06 2.08 8.06 -2.38 -0.02 2.06 16 28 H 0.12 2.88 7.88 -2.38 -0.02 2.86 16 29 H 0.07 1.24 6.91 -2.39 -0.02 1.22 16 30 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.64 4.80 -2.39 -0.01 1.63 16 33 H 0.09 1.72 6.58 -2.39 -0.02 1.71 16 34 H 0.07 1.37 7.90 -2.38 -0.02 1.35 16 35 H 0.05 2.03 6.67 -2.39 -0.02 2.02 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.96 6.95 -2.39 -0.02 1.95 16 38 H 0.26 16.05 6.50 -92.71 -0.60 15.44 16 Total: -1.00 -71.86 278.83 1.96 -69.90 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.22 Total: 14.58 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.87 Total: 3.10 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -6.09 Total: -106.56 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.05 Total: -34.23 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.00 Total: 53.21 kcal Total: -71.86 1.96 -69.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220400261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.704 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds