Wall clock time and date at job start Mon Mar 30 2020 03:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46734 * 109.47192 * 2 1 4 4 C 1.32689 * 117.22084 * 95.33562 * 3 2 1 5 5 O 1.22279 * 116.19351 * 12.05960 * 4 3 2 6 6 C 1.49475 * 127.02670 * 192.09502 * 4 3 2 7 7 H 1.11625 * 105.99083 * 139.84072 * 6 4 3 8 8 C 1.50296 * 111.39110 * 254.56954 * 6 4 3 9 9 H 1.08002 * 120.00193 * 122.95079 * 8 6 4 10 10 C 1.37882 * 119.99909 * 302.95824 * 8 6 4 11 11 N 1.31517 * 119.99718 * 331.80311 * 10 8 6 12 12 Si 1.86796 * 120.00073 * 151.81295 * 10 8 6 13 13 H 1.48503 * 109.47142 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47187 * 59.99445 * 12 10 8 15 15 H 1.48500 * 109.47020 * 299.99405 * 12 10 8 16 16 N 1.44937 * 113.60954 * 22.80059 * 6 4 3 17 17 C 1.46900 * 112.27736 * 152.16829 * 16 6 4 18 18 C 1.45874 * 117.03161 * 282.79142 * 16 6 4 19 19 C 1.53655 * 110.92165 * 36.05858 * 18 16 6 20 20 C 1.46088 * 117.04488 * 275.34848 * 3 2 1 21 21 H 1.08330 * 110.17262 * 91.88554 * 20 3 2 22 22 C 1.52695 * 109.63612 * 330.24300 * 20 3 2 23 23 H 1.09002 * 109.47540 * 184.98540 * 1 2 3 24 24 H 1.09001 * 109.47217 * 304.98714 * 1 2 3 25 25 H 1.09001 * 109.46955 * 64.98272 * 1 2 3 26 26 H 1.08998 * 109.47486 * 239.99491 * 2 1 3 27 27 H 1.09005 * 109.46659 * 119.99792 * 2 1 3 28 28 H 0.97002 * 120.00303 * 355.07861 * 11 10 8 29 29 H 1.08998 * 109.47399 * 59.99548 * 17 16 6 30 30 H 1.09004 * 109.47212 * 179.97438 * 17 16 6 31 31 H 1.09004 * 109.47199 * 299.99368 * 17 16 6 32 32 H 1.09255 * 109.50788 * 156.04529 * 18 16 6 33 33 H 1.09074 * 109.89016 * 275.48036 * 18 16 6 34 34 H 1.09344 * 108.69194 * 174.15394 * 19 18 16 35 35 H 1.07350 * 112.57060 * 296.24918 * 19 18 16 36 36 H 1.09007 * 109.47398 * 300.80871 * 22 20 3 37 37 H 1.09000 * 109.47070 * 60.80365 * 22 20 3 38 38 H 1.09002 * 109.47228 * 180.80788 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0191 1.3834 0.0000 4 6 2.3249 1.9191 1.1748 5 8 2.3894 1.1461 2.1201 6 6 2.5967 3.3603 1.4636 7 1 2.1044 3.5760 2.4420 8 6 4.0634 3.6095 1.6768 9 1 4.5836 4.3300 1.0630 10 6 4.7450 2.9182 2.6560 11 7 4.1079 2.4928 3.7250 12 14 6.5731 2.5860 2.4642 13 1 7.0657 1.8317 3.6447 14 1 7.3024 3.8755 2.3616 15 1 6.8047 1.7872 1.2339 16 7 2.0167 4.2663 0.4923 17 6 1.7115 5.5817 1.0706 18 6 2.7046 4.3950 -0.7876 19 6 3.2995 3.0487 -1.2286 20 6 2.1262 2.0501 -1.2955 21 1 1.2108 2.5855 -1.5169 22 6 2.4133 1.0166 -2.3822 23 1 -0.3634 -1.0238 0.0893 24 1 -0.3634 0.5893 0.8419 25 1 -0.3633 0.4346 -0.9313 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.1760 2.7263 3.8593 29 1 2.6282 6.0339 1.4491 30 1 1.2795 6.2245 0.3036 31 1 1.0005 5.4631 1.8883 32 1 1.9977 4.7322 -1.5494 33 1 3.5080 5.1281 -0.7050 34 1 3.7132 3.1611 -2.2345 35 1 4.0585 2.6940 -0.5574 36 1 3.3428 0.4959 -2.1521 37 1 1.5951 0.2976 -2.4251 38 1 2.5068 1.5185 -3.3453 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220403151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:33 Heat of formation + Delta-G solvation = -19.756711 kcal Electronic energy + Delta-G solvation = -19229.910977 eV Core-core repulsion = 16493.833003 eV Total energy + Delta-G solvation = -2736.077973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72081 -36.50867 -35.84169 -32.53564 -32.14906 -29.68670 -28.75344 -27.51560 -24.28265 -23.92550 -22.20283 -21.96554 -19.93835 -18.31999 -16.81877 -16.41932 -15.53036 -14.51778 -14.46096 -14.09645 -13.72979 -13.50720 -13.10081 -12.75155 -12.51134 -12.23472 -12.20426 -12.00383 -11.80498 -11.53790 -11.28194 -11.09017 -10.82582 -10.76766 -10.66233 -10.32910 -10.17059 -10.08221 -9.93952 -9.40850 -8.52232 -8.18540 -7.77193 -7.05757 -6.39797 -4.05696 3.41255 3.47309 3.64428 3.94312 3.98053 4.55409 4.76652 5.18399 5.26038 5.32887 5.43755 5.62659 5.71535 5.77848 5.78655 5.84297 5.95461 6.02918 6.07485 6.16987 6.19378 6.31848 6.33409 6.39365 6.49200 6.55881 6.62829 6.70617 6.77936 7.04773 7.42642 7.87125 8.00292 8.22178 8.42584 8.73038 8.83024 9.46889 9.64676 10.93799 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.011607 C = 0.010266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.815835 B = 2411.780468 C = 2726.758050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.087 3.913 3 N -0.603 5.603 4 C 0.528 3.472 5 O -0.559 6.559 6 C 0.223 3.777 7 H 0.043 0.957 8 C -0.660 4.660 9 H 0.057 0.943 10 C 0.049 3.951 11 N -0.836 5.836 12 Si 1.045 2.955 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.288 1.288 16 N -0.570 5.570 17 C 0.054 3.946 18 C 0.089 3.911 19 C -0.138 4.138 20 C 0.154 3.846 21 H 0.068 0.932 22 C -0.162 4.162 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.281 0.719 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 0.102 -11.521 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.036 4.036 3 N -0.338 5.338 4 C 0.319 3.681 5 O -0.437 6.437 6 C 0.113 3.887 7 H 0.061 0.939 8 C -0.697 4.697 9 H 0.075 0.925 10 C -0.166 4.166 11 N -0.464 5.464 12 Si 0.873 3.127 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.214 1.214 16 N -0.296 5.296 17 C -0.094 4.094 18 C -0.039 4.039 19 C -0.176 4.176 20 C 0.050 3.950 21 H 0.086 0.914 22 C -0.219 4.219 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.667 -1.233 -10.351 11.051 hybrid contribution -0.529 1.104 -0.729 1.425 sum -4.196 -0.129 -11.080 11.849 Atomic orbital electron populations 1.22061 0.96982 1.01033 1.01610 1.21497 0.93510 0.85595 1.03020 1.47509 1.66791 1.13153 1.06344 1.21579 0.72950 0.92484 0.81105 1.90898 1.51956 1.58530 1.42292 1.18619 0.96057 0.83936 0.90088 0.93937 1.21646 0.93727 1.30225 1.24095 0.92524 1.25577 1.05805 0.93539 0.91698 1.70600 1.13651 1.39454 1.22740 0.83935 0.75992 0.76454 0.76306 1.20758 1.21550 1.21430 1.58748 1.53077 1.12184 1.05568 1.21963 0.99627 0.89543 0.98286 1.21627 0.95377 0.96205 0.90699 1.22435 0.98335 0.95195 1.01608 1.20945 0.98334 0.92828 0.82868 0.91408 1.22176 1.02018 0.99569 0.98175 0.92660 0.92628 0.93287 0.91416 0.89496 0.90696 0.95229 0.93203 0.92676 0.92786 0.95585 0.91794 0.88337 0.92147 0.92214 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.21 37.16 0.38 -2.07 16 2 C 0.09 1.56 5.48 -3.92 -0.02 1.54 16 3 N -0.60 -12.36 2.70 -166.83 -0.45 -12.81 16 4 C 0.53 13.33 6.07 -12.50 -0.08 13.25 16 5 O -0.56 -16.17 13.67 4.66 0.06 -16.11 16 6 C 0.22 5.63 1.39 -71.85 -0.10 5.53 16 7 H 0.04 1.22 6.61 -50.41 -0.33 0.89 16 8 C -0.66 -18.01 6.44 -34.63 -0.22 -18.23 16 9 H 0.06 1.55 7.14 -52.49 -0.37 1.18 16 10 C 0.05 1.41 4.81 -17.82 -0.09 1.32 16 11 N -0.84 -25.71 12.41 55.43 0.69 -25.02 16 12 Si 1.05 25.47 29.99 -169.99 -5.10 20.37 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 N -0.57 -11.94 4.06 -239.29 -0.97 -12.91 16 17 C 0.05 1.01 9.45 60.06 0.57 1.58 16 18 C 0.09 1.62 4.51 -4.04 -0.02 1.60 16 19 C -0.14 -2.46 5.12 -25.75 -0.13 -2.60 16 20 C 0.15 2.59 3.15 -67.67 -0.21 2.37 16 21 H 0.07 1.12 7.61 -52.30 -0.40 0.72 16 22 C -0.16 -2.12 7.79 37.00 0.29 -1.84 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.03 5.51 -51.93 -0.29 0.74 16 27 H 0.09 1.81 6.71 -51.93 -0.35 1.46 16 28 H 0.28 8.84 6.68 -40.82 -0.27 8.57 16 29 H 0.03 0.59 7.98 -51.93 -0.41 0.18 16 30 H 0.05 0.77 8.04 -51.93 -0.42 0.36 16 31 H 0.05 1.01 8.01 -51.93 -0.42 0.60 16 32 H 0.05 0.84 8.10 -51.78 -0.42 0.42 16 33 H 0.03 0.49 7.63 -51.89 -0.40 0.10 16 34 H 0.06 0.93 7.81 -51.73 -0.40 0.53 16 35 H 0.10 2.17 5.78 -52.84 -0.31 1.87 16 36 H 0.06 0.84 8.08 -51.92 -0.42 0.42 16 37 H 0.06 0.72 6.65 -51.93 -0.35 0.37 16 38 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -32.03 289.41 -7.07 -39.11 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.03 Total: 0.54 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 0.37 Total: 2.47 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.73 Total: -50.74 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.06 Total: -16.11 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.10 Total: 20.37 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.03 -7.07 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220403151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.349 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds