Wall clock time and date at job start Mon Mar 30 2020 03:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46734 * 109.47192 * 2 1 4 4 C 1.32689 * 117.22084 * 95.33562 * 3 2 1 5 5 O 1.22279 * 116.19351 * 12.05960 * 4 3 2 6 6 C 1.49475 * 127.02670 * 192.09502 * 4 3 2 7 7 H 1.11625 * 105.99083 * 139.84072 * 6 4 3 8 8 C 1.50296 * 111.39110 * 254.56954 * 6 4 3 9 9 H 1.08002 * 120.00193 * 122.95079 * 8 6 4 10 10 C 1.37882 * 119.99909 * 302.95824 * 8 6 4 11 11 N 1.31517 * 119.99718 * 331.80311 * 10 8 6 12 12 Si 1.86796 * 120.00073 * 151.81295 * 10 8 6 13 13 H 1.48503 * 109.47142 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47187 * 59.99445 * 12 10 8 15 15 H 1.48500 * 109.47020 * 299.99405 * 12 10 8 16 16 N 1.44937 * 113.60954 * 22.80059 * 6 4 3 17 17 C 1.46900 * 112.27736 * 152.16829 * 16 6 4 18 18 C 1.45874 * 117.03161 * 282.79142 * 16 6 4 19 19 C 1.53655 * 110.92165 * 36.05858 * 18 16 6 20 20 C 1.46088 * 117.04488 * 275.34848 * 3 2 1 21 21 H 1.08330 * 110.17262 * 91.88554 * 20 3 2 22 22 C 1.52695 * 109.63612 * 330.24300 * 20 3 2 23 23 H 1.09002 * 109.47540 * 184.98540 * 1 2 3 24 24 H 1.09001 * 109.47217 * 304.98714 * 1 2 3 25 25 H 1.09001 * 109.46955 * 64.98272 * 1 2 3 26 26 H 1.08998 * 109.47486 * 239.99491 * 2 1 3 27 27 H 1.09005 * 109.46659 * 119.99792 * 2 1 3 28 28 H 0.97002 * 120.00303 * 355.07861 * 11 10 8 29 29 H 1.08998 * 109.47399 * 59.99548 * 17 16 6 30 30 H 1.09004 * 109.47212 * 179.97438 * 17 16 6 31 31 H 1.09004 * 109.47199 * 299.99368 * 17 16 6 32 32 H 1.09255 * 109.50788 * 156.04529 * 18 16 6 33 33 H 1.09074 * 109.89016 * 275.48036 * 18 16 6 34 34 H 1.09344 * 108.69194 * 174.15394 * 19 18 16 35 35 H 1.07350 * 112.57060 * 296.24918 * 19 18 16 36 36 H 1.09007 * 109.47398 * 300.80871 * 22 20 3 37 37 H 1.09000 * 109.47070 * 60.80365 * 22 20 3 38 38 H 1.09002 * 109.47228 * 180.80788 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0191 1.3834 0.0000 4 6 2.3249 1.9191 1.1748 5 8 2.3894 1.1461 2.1201 6 6 2.5967 3.3603 1.4636 7 1 2.1044 3.5760 2.4420 8 6 4.0634 3.6095 1.6768 9 1 4.5836 4.3300 1.0630 10 6 4.7450 2.9182 2.6560 11 7 4.1079 2.4928 3.7250 12 14 6.5731 2.5860 2.4642 13 1 7.0657 1.8317 3.6447 14 1 7.3024 3.8755 2.3616 15 1 6.8047 1.7872 1.2339 16 7 2.0167 4.2663 0.4923 17 6 1.7115 5.5817 1.0706 18 6 2.7046 4.3950 -0.7876 19 6 3.2995 3.0487 -1.2286 20 6 2.1262 2.0501 -1.2955 21 1 1.2108 2.5855 -1.5169 22 6 2.4133 1.0166 -2.3822 23 1 -0.3634 -1.0238 0.0893 24 1 -0.3634 0.5893 0.8419 25 1 -0.3633 0.4346 -0.9313 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.1760 2.7263 3.8593 29 1 2.6282 6.0339 1.4491 30 1 1.2795 6.2245 0.3036 31 1 1.0005 5.4631 1.8883 32 1 1.9977 4.7322 -1.5494 33 1 3.5080 5.1281 -0.7050 34 1 3.7132 3.1611 -2.2345 35 1 4.0585 2.6940 -0.5574 36 1 3.3428 0.4959 -2.1521 37 1 1.5951 0.2976 -2.4251 38 1 2.5068 1.5185 -3.3453 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220403151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:32 Heat of formation + Delta-G solvation = -42.670218 kcal Electronic energy + Delta-G solvation = -19230.904581 eV Core-core repulsion = 16493.833003 eV Total energy + Delta-G solvation = -2737.071578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.44329 -38.23860 -37.53430 -34.64742 -33.59976 -31.30222 -30.06617 -29.36022 -26.07682 -25.58253 -23.75840 -23.49129 -21.57484 -20.11230 -18.69133 -17.99948 -17.28651 -16.24622 -16.10412 -15.77094 -15.50652 -15.11358 -14.70917 -14.22657 -14.13534 -13.99985 -13.67998 -13.43685 -13.25570 -12.98430 -12.79387 -12.66828 -12.56516 -12.31080 -12.12600 -12.06143 -11.90248 -11.71361 -11.51037 -11.33257 -10.45931 -10.36522 -9.43916 -8.89993 -8.59011 -6.29815 1.43010 1.51298 1.70205 2.03181 2.35743 2.53029 3.05542 3.18960 3.87039 4.01078 4.08977 4.28194 4.35123 4.41043 4.43627 4.56895 4.58695 4.66735 4.74946 4.78498 4.81473 4.91715 4.95717 5.00281 5.04176 5.07515 5.17456 5.23755 5.37614 5.57197 5.83187 5.89634 6.03615 6.37722 6.49294 6.57382 6.92840 7.42442 7.64517 8.64978 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.011607 C = 0.010266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.815835 B = 2411.780468 C = 2726.758050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 N -0.598 5.598 4 C 0.521 3.479 5 O -0.610 6.610 6 C 0.234 3.766 7 H -0.007 1.007 8 C -0.652 4.652 9 H 0.054 0.946 10 C -0.003 4.003 11 N -0.870 5.870 12 Si 1.091 2.909 13 H -0.289 1.289 14 H -0.263 1.263 15 H -0.276 1.276 16 N -0.572 5.572 17 C 0.055 3.945 18 C 0.084 3.916 19 C -0.141 4.141 20 C 0.147 3.853 21 H 0.082 0.918 22 C -0.155 4.155 23 H 0.081 0.919 24 H 0.022 0.978 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.048 0.952 28 H 0.261 0.739 29 H 0.008 0.992 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.017 0.983 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 0.200 -15.488 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.040 4.040 3 N -0.330 5.330 4 C 0.312 3.688 5 O -0.492 6.492 6 C 0.123 3.877 7 H 0.011 0.989 8 C -0.690 4.690 9 H 0.072 0.928 10 C -0.211 4.211 11 N -0.500 5.500 12 Si 0.913 3.087 13 H -0.215 1.215 14 H -0.188 1.188 15 H -0.201 1.201 16 N -0.298 5.298 17 C -0.093 4.093 18 C -0.043 4.043 19 C -0.179 4.179 20 C 0.045 3.955 21 H 0.100 0.900 22 C -0.212 4.212 23 H 0.100 0.900 24 H 0.042 0.958 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.035 0.965 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.876 -1.110 -14.397 14.951 hybrid contribution -0.546 1.128 0.399 1.315 sum -4.422 0.019 -13.999 14.680 Atomic orbital electron populations 1.21972 0.94679 1.02426 1.01519 1.21708 0.95336 0.84017 1.02924 1.47535 1.64874 1.14226 1.06408 1.21340 0.73228 0.92053 0.82225 1.90870 1.54497 1.59465 1.44418 1.18297 0.94466 0.85510 0.89446 0.98920 1.21828 0.94834 1.29438 1.22870 0.92777 1.26962 1.09558 0.93301 0.91320 1.70728 1.12697 1.42139 1.24471 0.83338 0.71529 0.77513 0.76285 1.21499 1.18808 1.20138 1.58797 1.52800 1.12469 1.05752 1.22030 0.98696 0.89047 0.99489 1.21868 0.96100 0.96526 0.89828 1.22415 0.97678 0.95070 1.02704 1.21321 0.98511 0.93852 0.81811 0.89999 1.22148 1.02100 0.98963 0.97965 0.90030 0.95821 0.90681 0.87700 0.93323 0.92841 0.97322 0.88967 0.93414 0.88623 0.96454 0.87640 0.92826 0.93141 0.90528 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 10.21 71.98 0.73 -3.52 16 2 C 0.08 2.87 5.48 86.33 0.47 3.34 16 3 N -0.60 -24.06 2.70 -800.84 -2.17 -26.22 16 4 C 0.52 27.22 6.07 87.60 0.53 27.75 16 5 O -0.61 -37.47 13.67 -6.23 -0.09 -37.55 16 6 C 0.23 12.28 1.39 43.28 0.06 12.34 16 7 H -0.01 -0.41 6.61 -0.96 -0.01 -0.42 16 8 C -0.65 -36.73 6.44 25.47 0.16 -36.56 16 9 H 0.05 3.01 7.14 -2.91 -0.02 2.99 16 10 C 0.00 -0.18 4.81 84.66 0.41 0.23 16 11 N -0.87 -56.58 12.41 21.45 0.27 -56.31 16 12 Si 1.09 52.30 29.99 68.60 2.06 54.36 16 13 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 N -0.57 -23.72 4.06 -910.99 -3.70 -27.41 16 17 C 0.06 2.04 9.45 127.69 1.21 3.25 16 18 C 0.08 2.82 4.51 86.72 0.39 3.21 16 19 C -0.14 -4.63 5.12 31.23 0.16 -4.47 16 20 C 0.15 4.44 3.15 45.38 0.14 4.58 16 21 H 0.08 2.31 7.61 -2.74 -0.02 2.29 16 22 C -0.15 -3.27 7.79 71.88 0.56 -2.71 16 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 2.84 5.51 -2.39 -0.01 2.83 16 27 H 0.05 2.08 6.71 -2.38 -0.02 2.06 16 28 H 0.26 17.74 6.68 -92.71 -0.62 17.12 16 29 H 0.01 0.34 7.98 -2.39 -0.02 0.32 16 30 H 0.09 2.62 8.04 -2.38 -0.02 2.60 16 31 H 0.05 1.80 8.01 -2.38 -0.02 1.78 16 32 H 0.10 2.49 8.10 -2.25 -0.02 2.48 16 33 H 0.02 0.61 7.63 -2.35 -0.02 0.60 16 34 H 0.11 2.57 7.81 -2.20 -0.02 2.55 16 35 H 0.05 2.30 5.78 -3.24 -0.02 2.28 16 36 H 0.05 1.19 8.08 -2.38 -0.02 1.17 16 37 H 0.08 1.39 6.65 -2.39 -0.02 1.37 16 38 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -76.14 289.41 2.39 -73.75 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.18 Total: 11.95 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.83 Total: 7.44 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -5.60 Total: -109.95 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.09 Total: -37.55 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.06 Total: 54.36 kcal Total: -76.14 2.39 -73.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220403151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.084 kcal (2) G-P(sol) polarization free energy of solvation -76.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds