Wall clock time and date at job start Mon Mar 30 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.46967 * 2 1 4 4 C 1.45755 * 110.99599 * 191.86693 * 3 2 1 5 5 H 1.09003 * 108.47300 * 181.63019 * 4 3 2 6 6 C 1.53003 * 108.59137 * 63.85487 * 4 3 2 7 7 C 1.51685 * 113.93958 * 302.69990 * 4 3 2 8 8 C 1.53105 * 110.75798 * 293.23295 * 7 4 3 9 9 N 1.47249 * 108.40344 * 85.58508 * 8 7 4 10 10 C 1.46497 * 120.07487 * 110.02949 * 9 8 7 11 11 C 1.33614 * 119.84883 * 290.00584 * 9 8 7 12 12 O 1.21277 * 119.88359 * 179.45577 * 11 9 8 13 13 C 1.46879 * 110.99887 * 66.04787 * 3 2 1 14 14 H 1.09004 * 109.73021 * 159.06800 * 13 3 2 15 15 C 1.50694 * 109.60038 * 279.47246 * 13 3 2 16 16 H 1.08000 * 120.00563 * 359.19723 * 15 13 3 17 17 C 1.37885 * 119.99902 * 179.19887 * 15 13 3 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 H 1.09000 * 109.47238 * 299.99900 * 1 2 3 24 24 H 1.09004 * 109.47124 * 59.99538 * 1 2 3 25 25 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46576 * 239.99744 * 2 1 3 27 27 H 1.09000 * 109.46498 * 120.00111 * 2 1 3 28 28 H 1.09000 * 109.47037 * 295.61520 * 6 4 3 29 29 H 1.08998 * 109.47039 * 55.60838 * 6 4 3 30 30 H 1.08998 * 109.47315 * 175.61014 * 6 4 3 31 31 H 1.08999 * 109.21858 * 172.90369 * 7 4 3 32 32 H 1.09001 * 109.21951 * 53.56167 * 7 4 3 33 33 H 1.09006 * 109.67936 * 325.86058 * 8 7 4 34 34 H 1.09001 * 109.68144 * 205.31823 * 8 7 4 35 35 H 1.09000 * 109.47257 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47413 * 299.97985 * 10 9 8 37 37 H 1.09007 * 109.46902 * 59.98049 * 10 9 8 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4492 1.4335 -0.2798 5 1 3.7736 2.4734 -0.2412 6 6 3.6877 0.9018 -1.6945 7 6 4.2937 0.6272 0.6885 8 6 4.2456 1.2401 2.0907 9 7 3.0597 0.7142 2.7875 10 6 3.2188 -0.2204 3.9044 11 6 1.8383 1.0917 2.3991 12 8 0.8609 0.6513 2.9661 13 6 1.6702 2.0667 1.2532 14 1 2.3282 2.9230 1.4021 15 6 0.2387 2.5336 1.1925 16 1 -0.3506 2.3547 0.3053 17 6 -0.3188 3.1893 2.2698 18 7 0.3986 3.4067 3.3504 19 14 -2.0931 3.7686 2.1943 20 1 -2.1405 5.1482 1.6469 21 1 -2.8735 2.8605 1.3159 22 1 -2.6759 3.7577 3.5601 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.4032 -0.1494 -1.7404 29 1 3.0868 1.4719 -2.4030 30 1 4.7428 1.0040 -1.9481 31 1 5.3258 0.6127 0.3384 32 1 3.9153 -0.3942 0.7302 33 1 4.1755 2.3252 2.0149 34 1 5.1459 0.9676 2.6415 35 1 2.2373 -0.4963 4.2899 36 1 3.7380 -1.1144 3.5590 37 1 3.7996 0.2542 4.6954 38 1 0.0064 3.8683 4.1080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220403788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:43 Heat of formation + Delta-G solvation = -13.644698 kcal Electronic energy + Delta-G solvation = -19428.351911 eV Core-core repulsion = 16692.538975 eV Total energy + Delta-G solvation = -2735.812937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92732 -36.68580 -35.03703 -32.66715 -31.87501 -29.50788 -29.04279 -26.52195 -25.96439 -23.29214 -22.48019 -22.00859 -19.08551 -17.86986 -16.44480 -15.98421 -15.48165 -15.29327 -14.87065 -14.24999 -13.70816 -13.24497 -13.04150 -12.63873 -12.49081 -12.04769 -11.84800 -11.73907 -11.49977 -11.38088 -11.20138 -11.04686 -10.87367 -10.80410 -10.61576 -10.43150 -10.18884 -10.07563 -9.37539 -9.17535 -8.55641 -8.27792 -7.71859 -7.22004 -5.97092 -3.94295 3.39017 3.46048 3.50027 3.94483 4.12924 4.50615 4.96235 5.10030 5.30175 5.36373 5.55301 5.72049 5.73434 5.82458 5.90880 5.95729 5.99611 6.05841 6.13706 6.23219 6.24901 6.32659 6.43553 6.50205 6.58886 6.66369 6.73489 7.01730 7.02652 7.40658 7.64196 7.87546 8.03501 8.08418 8.34542 8.65142 9.06321 9.66215 9.75523 11.14114 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.011422 C = 0.009506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.074422 B = 2450.728502 C = 2944.829299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.058 3.942 3 N -0.514 5.514 4 C 0.076 3.924 5 H 0.075 0.925 6 C -0.141 4.141 7 C -0.168 4.168 8 C 0.119 3.881 9 N -0.638 5.638 10 C 0.086 3.914 11 C 0.509 3.491 12 O -0.521 6.521 13 C 0.213 3.787 14 H 0.051 0.949 15 C -0.490 4.490 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.282 1.282 21 H -0.272 1.272 22 H -0.289 1.289 23 H 0.108 0.892 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 -5.054 -4.717 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.070 4.070 3 N -0.238 5.238 4 C -0.034 4.034 5 H 0.093 0.907 6 C -0.199 4.199 7 C -0.209 4.209 8 C -0.005 4.005 9 N -0.376 5.376 10 C -0.058 4.058 11 C 0.297 3.703 12 O -0.393 6.393 13 C 0.103 3.897 14 H 0.069 0.931 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.519 5.519 19 Si 0.728 3.272 20 H -0.209 1.209 21 H -0.197 1.197 22 H -0.215 1.215 23 H 0.127 0.873 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.018 -4.960 -4.585 10.484 hybrid contribution -0.196 -0.166 0.934 0.969 sum 7.822 -5.126 -3.652 10.039 Atomic orbital electron populations 1.22167 0.94635 0.99380 1.05377 1.21993 0.97082 0.89337 0.98547 1.61914 1.10434 1.15244 1.36194 1.21310 0.88738 0.99333 0.93973 0.90660 1.21905 1.00278 1.00965 0.96756 1.22494 1.00736 1.01219 0.96449 1.21567 0.88115 0.98841 0.91984 1.48257 1.07118 1.47704 1.34510 1.21402 1.02640 0.92117 0.89631 1.22590 0.80780 0.81205 0.85761 1.90471 1.38413 1.54760 1.55606 1.19742 0.99121 0.90649 0.80187 0.93144 1.20782 0.95248 1.35559 1.01262 0.90669 1.24889 0.97953 0.95244 0.95038 1.69884 1.36631 1.40836 1.04592 0.86469 0.84915 0.78661 0.77139 1.20873 1.19704 1.21512 0.87328 0.93255 0.95279 0.92701 0.95606 0.93114 0.91884 0.93169 0.91229 0.91622 0.91035 0.91145 0.90155 0.94267 0.93880 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.61 37.16 0.32 -3.07 16 2 C 0.06 1.17 4.36 -3.83 -0.02 1.15 16 3 N -0.51 -10.66 4.30 -222.79 -0.96 -11.62 16 4 C 0.08 1.27 2.22 -69.00 -0.15 1.11 16 5 H 0.08 1.26 7.78 -51.93 -0.40 0.86 16 6 C -0.14 -1.95 8.84 37.16 0.33 -1.62 16 7 C -0.17 -2.51 4.70 -27.34 -0.13 -2.64 16 8 C 0.12 1.96 5.96 -3.58 -0.02 1.94 16 9 N -0.64 -13.12 2.75 -180.94 -0.50 -13.62 16 10 C 0.09 1.54 10.62 59.85 0.64 2.17 16 11 C 0.51 12.63 3.47 -11.16 -0.04 12.59 16 12 O -0.52 -14.84 13.40 5.56 0.07 -14.77 16 13 C 0.21 5.25 1.81 -69.69 -0.13 5.13 16 14 H 0.05 1.33 6.68 -51.93 -0.35 0.98 16 15 C -0.49 -13.45 5.85 -34.44 -0.20 -13.65 16 16 H 0.08 2.06 6.34 -52.49 -0.33 1.73 16 17 C 0.07 2.06 4.82 -17.82 -0.09 1.97 16 18 N -0.88 -26.07 12.01 55.43 0.67 -25.41 16 19 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 23 H 0.11 2.77 4.27 -51.93 -0.22 2.55 16 24 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.97 5.91 -51.93 -0.31 0.66 16 27 H 0.03 0.56 5.25 -51.93 -0.27 0.29 16 28 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.07 1.05 6.61 -51.93 -0.34 0.71 16 33 H 0.07 1.26 6.76 -51.93 -0.35 0.91 16 34 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 35 H 0.08 1.63 6.88 -51.93 -0.36 1.27 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 280.43 15.07 4.23 4.23 Total: -1.00 -31.42 280.43 -6.76 -38.18 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.76 Total: 0.69 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 0.51 Total: 5.08 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.79 Total: -50.65 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.07 Total: -14.77 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.42 -6.76 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220403788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.535 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds