Wall clock time and date at job start Mon Mar 30 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.46967 * 2 1 4 4 C 1.45755 * 110.99599 * 191.86693 * 3 2 1 5 5 H 1.09003 * 108.47300 * 181.63019 * 4 3 2 6 6 C 1.53003 * 108.59137 * 63.85487 * 4 3 2 7 7 C 1.51685 * 113.93958 * 302.69990 * 4 3 2 8 8 C 1.53105 * 110.75798 * 293.23295 * 7 4 3 9 9 N 1.47249 * 108.40344 * 85.58508 * 8 7 4 10 10 C 1.46497 * 120.07487 * 110.02949 * 9 8 7 11 11 C 1.33614 * 119.84883 * 290.00584 * 9 8 7 12 12 O 1.21277 * 119.88359 * 179.45577 * 11 9 8 13 13 C 1.46879 * 110.99887 * 66.04787 * 3 2 1 14 14 H 1.09004 * 109.73021 * 159.06800 * 13 3 2 15 15 C 1.50694 * 109.60038 * 279.47246 * 13 3 2 16 16 H 1.08000 * 120.00563 * 359.19723 * 15 13 3 17 17 C 1.37885 * 119.99902 * 179.19887 * 15 13 3 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 H 1.09000 * 109.47238 * 299.99900 * 1 2 3 24 24 H 1.09004 * 109.47124 * 59.99538 * 1 2 3 25 25 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46576 * 239.99744 * 2 1 3 27 27 H 1.09000 * 109.46498 * 120.00111 * 2 1 3 28 28 H 1.09000 * 109.47037 * 295.61520 * 6 4 3 29 29 H 1.08998 * 109.47039 * 55.60838 * 6 4 3 30 30 H 1.08998 * 109.47315 * 175.61014 * 6 4 3 31 31 H 1.08999 * 109.21858 * 172.90369 * 7 4 3 32 32 H 1.09001 * 109.21951 * 53.56167 * 7 4 3 33 33 H 1.09006 * 109.67936 * 325.86058 * 8 7 4 34 34 H 1.09001 * 109.68144 * 205.31823 * 8 7 4 35 35 H 1.09000 * 109.47257 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47413 * 299.97985 * 10 9 8 37 37 H 1.09007 * 109.46902 * 59.98049 * 10 9 8 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4492 1.4335 -0.2798 5 1 3.7736 2.4734 -0.2412 6 6 3.6877 0.9018 -1.6945 7 6 4.2937 0.6272 0.6885 8 6 4.2456 1.2401 2.0907 9 7 3.0597 0.7142 2.7875 10 6 3.2188 -0.2204 3.9044 11 6 1.8383 1.0917 2.3991 12 8 0.8609 0.6513 2.9661 13 6 1.6702 2.0667 1.2532 14 1 2.3282 2.9230 1.4021 15 6 0.2387 2.5336 1.1925 16 1 -0.3506 2.3547 0.3053 17 6 -0.3188 3.1893 2.2698 18 7 0.3986 3.4067 3.3504 19 14 -2.0931 3.7686 2.1943 20 1 -2.1405 5.1482 1.6469 21 1 -2.8735 2.8605 1.3159 22 1 -2.6759 3.7577 3.5601 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.4032 -0.1494 -1.7404 29 1 3.0868 1.4719 -2.4030 30 1 4.7428 1.0040 -1.9481 31 1 5.3258 0.6127 0.3384 32 1 3.9153 -0.3942 0.7302 33 1 4.1755 2.3252 2.0149 34 1 5.1459 0.9676 2.6415 35 1 2.2373 -0.4963 4.2899 36 1 3.7380 -1.1144 3.5590 37 1 3.7996 0.2542 4.6954 38 1 0.0064 3.8683 4.1080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220403788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:43 Heat of formation + Delta-G solvation = -36.131412 kcal Electronic energy + Delta-G solvation = -19429.327009 eV Core-core repulsion = 16692.538975 eV Total energy + Delta-G solvation = -2736.788034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58392 -38.35302 -36.68962 -34.62538 -33.52456 -31.22817 -30.43846 -28.24834 -27.59808 -24.75888 -24.27234 -23.56352 -20.57686 -19.59896 -18.33384 -17.72855 -17.17880 -16.95216 -16.41451 -16.19741 -15.18446 -14.69587 -14.53148 -14.32627 -14.11966 -13.57198 -13.44780 -13.17621 -13.14239 -13.00297 -12.76207 -12.69193 -12.65287 -12.52025 -12.27121 -12.08767 -11.64271 -11.60918 -11.18773 -11.09865 -10.52549 -10.27686 -9.35872 -8.89475 -8.10444 -6.11149 1.39551 1.42944 1.51687 2.24197 2.41093 2.52192 3.28498 3.38356 3.84871 4.01711 4.15699 4.26858 4.36857 4.49079 4.54917 4.59607 4.68375 4.72036 4.77768 4.83151 4.87705 4.93563 4.99136 5.05171 5.14460 5.20457 5.27588 5.42530 5.49877 5.76990 5.82587 5.90437 6.08201 6.38006 6.61963 6.83479 6.99876 7.52996 7.90533 8.99409 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.011422 C = 0.009506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.074422 B = 2450.728502 C = 2944.829299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 N -0.522 5.522 4 C 0.065 3.935 5 H 0.070 0.930 6 C -0.132 4.132 7 C -0.157 4.157 8 C 0.110 3.890 9 N -0.641 5.641 10 C 0.085 3.915 11 C 0.509 3.491 12 O -0.571 6.571 13 C 0.216 3.784 14 H 0.028 0.972 15 C -0.492 4.492 16 H 0.068 0.932 17 C 0.021 3.979 18 N -0.915 5.915 19 Si 0.952 3.048 20 H -0.269 1.269 21 H -0.269 1.269 22 H -0.295 1.295 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -6.072 -6.179 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.062 4.062 3 N -0.247 5.247 4 C -0.044 4.044 5 H 0.088 0.912 6 C -0.189 4.189 7 C -0.197 4.197 8 C -0.012 4.012 9 N -0.377 5.377 10 C -0.057 4.057 11 C 0.297 3.703 12 O -0.447 6.447 13 C 0.106 3.894 14 H 0.046 0.954 15 C -0.530 4.530 16 H 0.086 0.914 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.194 1.194 21 H -0.194 1.194 22 H -0.221 1.221 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.133 -5.977 -6.081 13.243 hybrid contribution -0.743 0.116 1.343 1.539 sum 9.390 -5.861 -4.739 12.041 Atomic orbital electron populations 1.22044 0.96007 0.99958 1.03215 1.21956 0.95967 0.89092 0.99233 1.61839 1.13732 1.15366 1.33758 1.21527 0.86440 0.99922 0.96471 0.91191 1.21834 1.02290 1.00683 0.94123 1.22398 1.02768 0.99880 0.94680 1.21894 0.87777 0.98048 0.93476 1.48294 1.07097 1.47420 1.34921 1.21525 1.01621 0.93134 0.89463 1.22373 0.81611 0.80906 0.85398 1.90440 1.40413 1.56728 1.57097 1.19441 0.97147 0.90490 0.82343 0.95424 1.21072 0.96739 1.34576 1.00639 0.91406 1.25594 1.01340 0.95917 0.94985 1.69999 1.37900 1.42387 1.05103 0.85645 0.80993 0.78810 0.76697 1.19429 1.19406 1.22126 0.91638 0.92976 0.93438 0.89428 0.97118 0.92667 0.92725 0.89917 0.86861 0.92202 0.92678 0.87212 0.93298 0.90712 0.91866 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.62 8.61 71.98 0.62 -6.00 16 2 C 0.07 2.54 4.36 86.30 0.38 2.91 16 3 N -0.52 -21.30 4.30 -858.78 -3.69 -24.99 16 4 C 0.07 2.01 2.22 44.70 0.10 2.11 16 5 H 0.07 2.22 7.78 -2.39 -0.02 2.21 16 6 C -0.13 -3.11 8.84 71.98 0.64 -2.48 16 7 C -0.16 -4.10 4.70 30.20 0.14 -3.96 16 8 C 0.11 3.36 5.96 86.27 0.51 3.88 16 9 N -0.64 -25.80 2.75 -845.40 -2.32 -28.12 16 10 C 0.09 2.94 10.62 127.77 1.36 4.30 16 11 C 0.51 25.69 3.47 88.06 0.31 25.99 16 12 O -0.57 -33.72 13.40 -3.02 -0.04 -33.76 16 13 C 0.22 10.88 1.81 43.65 0.08 10.96 16 14 H 0.03 1.52 6.68 -2.38 -0.02 1.50 16 15 C -0.49 -27.77 5.85 25.60 0.15 -27.62 16 16 H 0.07 3.82 6.34 -2.91 -0.02 3.80 16 17 C 0.02 1.25 4.82 84.66 0.41 1.66 16 18 N -0.91 -56.03 12.01 21.45 0.26 -55.77 16 19 Si 0.95 46.92 29.54 68.60 2.03 48.95 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 23 H 0.06 3.43 4.27 -2.39 -0.01 3.42 16 24 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 26 H 0.09 2.83 5.91 -2.39 -0.01 2.81 16 27 H 0.01 0.46 5.25 -2.39 -0.01 0.44 16 28 H 0.05 1.26 6.37 -2.39 -0.02 1.24 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 2.04 8.10 -2.39 -0.02 2.02 16 32 H 0.06 1.69 6.61 -2.39 -0.02 1.67 16 33 H 0.05 1.88 6.76 -2.38 -0.02 1.86 16 34 H 0.11 2.49 7.97 -2.39 -0.02 2.47 16 35 H 0.05 2.00 6.88 -2.39 -0.02 1.98 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -71.57 280.43 1.96 -69.61 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.04 Total: 12.33 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 4.69 Total: 11.76 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -5.76 Total: -108.88 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.04 Total: -33.76 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -71.57 1.96 -69.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220403788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.480 kcal (2) G-P(sol) polarization free energy of solvation -71.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds