Wall clock time and date at job start Mon Mar 30 2020 03:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47093 * 2 1 4 4 C 1.45752 * 110.99731 * 59.77351 * 3 2 1 5 5 H 1.08998 * 108.59351 * 288.42160 * 4 3 2 6 6 C 1.53003 * 108.59124 * 46.26651 * 4 3 2 7 7 C 1.51686 * 113.93552 * 167.27270 * 4 3 2 8 8 C 1.53108 * 110.75841 * 66.77281 * 7 4 3 9 9 N 1.47250 * 108.40232 * 274.40585 * 8 7 4 10 10 C 1.46497 * 120.07967 * 249.98719 * 9 8 7 11 11 C 1.33611 * 119.84106 * 69.98411 * 9 8 7 12 12 O 1.21280 * 119.88108 * 180.54932 * 11 9 8 13 13 C 1.46880 * 111.00318 * 293.95253 * 3 2 1 14 14 H 1.09002 * 109.60001 * 330.71461 * 13 3 2 15 15 C 1.50696 * 109.59867 * 91.03034 * 13 3 2 16 16 H 1.08002 * 120.00309 * 356.87873 * 15 13 3 17 17 C 1.37877 * 119.99526 * 176.87890 * 15 13 3 18 18 N 1.31511 * 120.00291 * 0.27697 * 17 15 13 19 19 Si 1.86800 * 119.99869 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47032 * 89.99652 * 19 17 15 21 21 H 1.48502 * 109.47385 * 210.00047 * 19 17 15 22 22 H 1.48506 * 109.47024 * 330.00313 * 19 17 15 23 23 H 1.09003 * 109.47111 * 60.00341 * 1 2 3 24 24 H 1.09007 * 109.47611 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47691 * 300.00035 * 1 2 3 26 26 H 1.09006 * 109.47282 * 240.00132 * 2 1 3 27 27 H 1.09002 * 109.46871 * 120.00152 * 2 1 3 28 28 H 1.09002 * 109.46990 * 59.99890 * 6 4 3 29 29 H 1.09001 * 109.46590 * 180.02562 * 6 4 3 30 30 H 1.09003 * 109.47029 * 299.99538 * 6 4 3 31 31 H 1.09004 * 109.21869 * 187.10350 * 7 4 3 32 32 H 1.09006 * 109.22234 * 306.43973 * 7 4 3 33 33 H 1.09002 * 109.67815 * 34.13605 * 8 7 4 34 34 H 1.09003 * 109.67621 * 154.68301 * 8 7 4 35 35 H 1.09001 * 109.47368 * 89.99618 * 10 9 8 36 36 H 1.09000 * 109.46943 * 210.00113 * 10 9 8 37 37 H 1.08999 * 109.46900 * 329.99902 * 10 9 8 38 38 H 0.97000 * 120.00158 * 359.72590 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5479 2.1057 1.1757 5 1 0.4798 2.2921 1.0637 6 6 1.7611 1.2230 2.4071 7 6 2.2484 3.4311 1.4072 8 6 1.9087 4.4260 0.2942 9 7 2.8376 4.2046 -0.8267 10 6 3.8665 5.2006 -1.1354 11 6 2.7398 3.0930 -1.5615 12 8 3.5109 2.9051 -2.4786 13 6 1.6703 2.0669 -1.2531 14 1 1.6145 1.3387 -2.0624 15 6 0.3385 2.7552 -1.0998 16 1 -0.2205 2.6514 -0.1815 17 6 -0.1664 3.5174 -2.1318 18 7 0.5117 3.6393 -3.2520 19 14 -1.8176 4.3700 -1.9421 20 1 -1.6120 5.7258 -1.3719 21 1 -2.4707 4.4856 -3.2708 22 1 -2.6828 3.5766 -1.0325 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.8220 0.9957 2.5119 29 1 1.4122 1.7488 3.2959 30 1 1.2005 0.2954 2.2907 31 1 1.9306 3.8423 2.3654 32 1 3.3261 3.2688 1.4269 33 1 0.8840 4.2659 -0.0411 34 1 2.0188 5.4447 0.6663 35 1 4.7740 4.9707 -0.5771 36 1 4.0823 5.1810 -2.2036 37 1 3.5088 6.1914 -0.8551 38 1 1.3689 3.1962 -3.3508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220403847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:46 Heat of formation + Delta-G solvation = -14.314847 kcal Electronic energy + Delta-G solvation = -19571.220624 eV Core-core repulsion = 16835.378627 eV Total energy + Delta-G solvation = -2735.841996 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83801 -37.31805 -34.84728 -33.24767 -31.95137 -29.79662 -28.43340 -26.38274 -25.50395 -23.58072 -23.05328 -21.64108 -18.99191 -18.24978 -16.99268 -16.21143 -15.65318 -14.66073 -14.35021 -14.13061 -13.88788 -13.47625 -13.14493 -12.54129 -12.32431 -12.22795 -11.96610 -11.88399 -11.64085 -11.51763 -11.27051 -11.17165 -10.89211 -10.73103 -10.56416 -10.28216 -10.21531 -10.01791 -9.60816 -9.24082 -8.82097 -8.37467 -7.60892 -7.10305 -6.50336 -4.26734 3.29486 3.32949 3.47802 3.92216 4.16234 4.35306 4.87505 5.19836 5.43665 5.52377 5.69981 5.74046 5.90647 5.95685 5.97693 6.05670 6.07433 6.20484 6.24088 6.26235 6.28983 6.38644 6.50053 6.50332 6.62041 6.63224 6.81058 6.86833 7.08942 7.17749 7.59108 7.65778 7.86729 8.11401 8.28979 8.59600 8.60672 9.37463 9.53290 10.83857 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.014592 C = 0.011245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.265741 B = 1918.392670 C = 2489.428058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.062 3.938 3 N -0.530 5.530 4 C 0.082 3.918 5 H 0.067 0.933 6 C -0.154 4.154 7 C -0.118 4.118 8 C 0.090 3.910 9 N -0.599 5.599 10 C 0.090 3.910 11 C 0.546 3.454 12 O -0.587 6.587 13 C 0.189 3.811 14 H 0.056 0.944 15 C -0.631 4.631 16 H 0.076 0.924 17 C 0.028 3.972 18 N -0.888 5.888 19 Si 1.061 2.939 20 H -0.285 1.285 21 H -0.282 1.282 22 H -0.286 1.286 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.131 0.869 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 -0.500 10.121 10.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.067 4.067 3 N -0.255 5.255 4 C -0.027 4.027 5 H 0.084 0.916 6 C -0.211 4.211 7 C -0.157 4.157 8 C -0.032 4.032 9 N -0.331 5.331 10 C -0.054 4.054 11 C 0.335 3.665 12 O -0.467 6.467 13 C 0.079 3.921 14 H 0.073 0.927 15 C -0.668 4.668 16 H 0.093 0.907 17 C -0.182 4.182 18 N -0.523 5.523 19 Si 0.889 3.111 20 H -0.211 1.211 21 H -0.208 1.208 22 H -0.211 1.211 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.370 0.374 8.868 8.883 hybrid contribution 0.315 -0.791 0.793 1.164 sum -0.055 -0.418 9.661 9.670 Atomic orbital electron populations 1.22551 0.97917 1.00262 1.03987 1.22031 0.93448 0.90236 1.00938 1.61388 1.60036 1.01755 1.02304 1.21045 0.99670 0.92861 0.89097 0.91584 1.22142 1.01581 0.99978 0.97425 1.21705 1.00680 0.95460 0.97890 1.22506 0.98653 0.96234 0.85767 1.47440 1.32846 1.20331 1.32472 1.21440 0.90991 0.91269 1.01663 1.21377 0.83124 0.82374 0.79585 1.90524 1.45115 1.78752 1.32323 1.19676 0.91711 0.91613 0.89069 0.92652 1.22278 1.04372 1.35617 1.04567 0.90665 1.25802 1.03908 0.96017 0.92428 1.70649 1.15351 1.40648 1.25626 0.83652 0.74993 0.76197 0.76294 1.21147 1.20768 1.21141 0.89660 0.94358 0.93109 0.91939 0.91766 0.92867 0.93231 0.92542 0.91867 0.92402 0.85191 0.92886 0.94366 0.91438 0.92600 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 8.31 37.16 0.31 -3.00 16 2 C 0.06 1.12 5.37 -3.83 -0.02 1.10 16 3 N -0.53 -10.95 4.43 -222.80 -0.99 -11.94 16 4 C 0.08 1.47 1.43 -69.00 -0.10 1.37 16 5 H 0.07 1.28 4.03 -51.93 -0.21 1.07 16 6 C -0.15 -2.27 8.15 37.16 0.30 -1.97 16 7 C -0.12 -2.05 5.09 -27.34 -0.14 -2.19 16 8 C 0.09 1.76 5.88 -3.58 -0.02 1.74 16 9 N -0.60 -13.39 2.88 -180.94 -0.52 -13.91 16 10 C 0.09 1.74 10.43 59.85 0.62 2.37 16 11 C 0.55 14.08 4.81 -11.16 -0.05 14.03 16 12 O -0.59 -17.03 15.99 5.56 0.09 -16.94 16 13 C 0.19 4.62 1.61 -69.69 -0.11 4.51 16 14 H 0.06 1.52 7.57 -51.93 -0.39 1.13 16 15 C -0.63 -15.17 2.77 -34.44 -0.10 -15.27 16 16 H 0.08 1.74 4.60 -52.49 -0.24 1.50 16 17 C 0.03 0.72 4.95 -17.82 -0.09 0.64 16 18 N -0.89 -25.86 13.35 55.43 0.74 -25.12 16 19 Si 1.06 22.98 29.90 -169.99 -5.08 17.90 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 23 H 0.08 1.76 6.08 -51.93 -0.32 1.45 16 24 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.05 0.86 5.95 -51.93 -0.31 0.55 16 26 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 27 H 0.06 1.03 6.11 -51.93 -0.32 0.71 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 0.80 5.40 -51.93 -0.28 0.52 16 31 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 32 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 33 H 0.13 2.83 4.22 -51.93 -0.22 2.61 16 34 H 0.05 0.88 7.79 -51.93 -0.40 0.48 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.43 7.41 -51.93 -0.38 1.05 16 37 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 38 H 0.29 8.73 5.52 -40.82 -0.23 8.50 16 LS Contribution 275.77 15.07 4.16 4.16 Total: -1.00 -30.00 275.77 -6.44 -36.44 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.44 Total: 6.09 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 0.61 Total: 3.33 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.77 Total: -50.97 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.09 Total: -16.94 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.08 Total: 17.90 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.00 -6.44 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220403847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.123 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds