Wall clock time and date at job start Mon Mar 30 2020 03:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47093 * 2 1 4 4 C 1.45752 * 110.99731 * 59.77351 * 3 2 1 5 5 H 1.08998 * 108.59351 * 288.42160 * 4 3 2 6 6 C 1.53003 * 108.59124 * 46.26651 * 4 3 2 7 7 C 1.51686 * 113.93552 * 167.27270 * 4 3 2 8 8 C 1.53108 * 110.75841 * 66.77281 * 7 4 3 9 9 N 1.47250 * 108.40232 * 274.40585 * 8 7 4 10 10 C 1.46497 * 120.07967 * 249.98719 * 9 8 7 11 11 C 1.33611 * 119.84106 * 69.98411 * 9 8 7 12 12 O 1.21280 * 119.88108 * 180.54932 * 11 9 8 13 13 C 1.46880 * 111.00318 * 293.95253 * 3 2 1 14 14 H 1.09002 * 109.60001 * 330.71461 * 13 3 2 15 15 C 1.50696 * 109.59867 * 91.03034 * 13 3 2 16 16 H 1.08002 * 120.00309 * 356.87873 * 15 13 3 17 17 C 1.37877 * 119.99526 * 176.87890 * 15 13 3 18 18 N 1.31511 * 120.00291 * 0.27697 * 17 15 13 19 19 Si 1.86800 * 119.99869 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47032 * 89.99652 * 19 17 15 21 21 H 1.48502 * 109.47385 * 210.00047 * 19 17 15 22 22 H 1.48506 * 109.47024 * 330.00313 * 19 17 15 23 23 H 1.09003 * 109.47111 * 60.00341 * 1 2 3 24 24 H 1.09007 * 109.47611 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47691 * 300.00035 * 1 2 3 26 26 H 1.09006 * 109.47282 * 240.00132 * 2 1 3 27 27 H 1.09002 * 109.46871 * 120.00152 * 2 1 3 28 28 H 1.09002 * 109.46990 * 59.99890 * 6 4 3 29 29 H 1.09001 * 109.46590 * 180.02562 * 6 4 3 30 30 H 1.09003 * 109.47029 * 299.99538 * 6 4 3 31 31 H 1.09004 * 109.21869 * 187.10350 * 7 4 3 32 32 H 1.09006 * 109.22234 * 306.43973 * 7 4 3 33 33 H 1.09002 * 109.67815 * 34.13605 * 8 7 4 34 34 H 1.09003 * 109.67621 * 154.68301 * 8 7 4 35 35 H 1.09001 * 109.47368 * 89.99618 * 10 9 8 36 36 H 1.09000 * 109.46943 * 210.00113 * 10 9 8 37 37 H 1.08999 * 109.46900 * 329.99902 * 10 9 8 38 38 H 0.97000 * 120.00158 * 359.72590 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5479 2.1057 1.1757 5 1 0.4798 2.2921 1.0637 6 6 1.7611 1.2230 2.4071 7 6 2.2484 3.4311 1.4072 8 6 1.9087 4.4260 0.2942 9 7 2.8376 4.2046 -0.8267 10 6 3.8665 5.2006 -1.1354 11 6 2.7398 3.0930 -1.5615 12 8 3.5109 2.9051 -2.4786 13 6 1.6703 2.0669 -1.2531 14 1 1.6145 1.3387 -2.0624 15 6 0.3385 2.7552 -1.0998 16 1 -0.2205 2.6514 -0.1815 17 6 -0.1664 3.5174 -2.1318 18 7 0.5117 3.6393 -3.2520 19 14 -1.8176 4.3700 -1.9421 20 1 -1.6120 5.7258 -1.3719 21 1 -2.4707 4.4856 -3.2708 22 1 -2.6828 3.5766 -1.0325 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.8220 0.9957 2.5119 29 1 1.4122 1.7488 3.2959 30 1 1.2005 0.2954 2.2907 31 1 1.9306 3.8423 2.3654 32 1 3.3261 3.2688 1.4269 33 1 0.8840 4.2659 -0.0411 34 1 2.0188 5.4447 0.6663 35 1 4.7740 4.9707 -0.5771 36 1 4.0823 5.1810 -2.2036 37 1 3.5088 6.1914 -0.8551 38 1 1.3689 3.1962 -3.3508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220403847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:46 Heat of formation + Delta-G solvation = -35.879890 kcal Electronic energy + Delta-G solvation = -19572.155754 eV Core-core repulsion = 16835.378627 eV Total energy + Delta-G solvation = -2736.777127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58259 -39.07196 -36.60998 -35.16310 -33.48785 -31.47816 -29.91192 -28.00382 -27.30929 -25.26965 -24.63924 -23.21557 -20.58510 -20.09090 -18.77385 -17.83414 -17.45733 -16.33315 -16.04675 -15.74918 -15.58766 -15.08987 -14.86661 -14.09248 -13.91607 -13.85254 -13.59332 -13.51063 -13.25625 -13.09063 -12.77586 -12.63598 -12.40404 -12.31863 -12.10104 -11.94470 -11.78123 -11.46340 -11.20554 -11.04505 -10.76191 -10.35868 -9.37901 -8.78843 -8.54993 -6.30741 1.55018 1.61679 1.76966 2.01024 2.46301 2.56734 3.13949 3.37968 4.06578 4.13926 4.16555 4.22262 4.47009 4.55548 4.57435 4.62055 4.63882 4.73577 4.82948 4.84742 4.86757 4.93093 4.95120 5.04824 5.09648 5.21282 5.30017 5.40727 5.57433 5.63855 5.77684 5.96008 6.03186 6.42121 6.44818 6.60564 6.76296 7.41775 7.59728 8.74951 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.014592 C = 0.011245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.265741 B = 1918.392670 C = 2489.428058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 N -0.540 5.540 4 C 0.075 3.925 5 H 0.055 0.945 6 C -0.144 4.144 7 C -0.113 4.113 8 C 0.082 3.918 9 N -0.600 5.600 10 C 0.087 3.913 11 C 0.534 3.466 12 O -0.636 6.636 13 C 0.195 3.805 14 H 0.006 0.994 15 C -0.599 4.599 16 H 0.091 0.909 17 C -0.022 4.022 18 N -0.932 5.932 19 Si 1.105 2.895 20 H -0.267 1.267 21 H -0.299 1.299 22 H -0.259 1.259 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 0.120 13.889 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.069 4.069 3 N -0.265 5.265 4 C -0.033 4.033 5 H 0.073 0.927 6 C -0.202 4.202 7 C -0.152 4.152 8 C -0.039 4.039 9 N -0.330 5.330 10 C -0.056 4.056 11 C 0.324 3.676 12 O -0.521 6.521 13 C 0.084 3.916 14 H 0.024 0.976 15 C -0.637 4.637 16 H 0.109 0.891 17 C -0.223 4.223 18 N -0.570 5.570 19 Si 0.927 3.073 20 H -0.192 1.192 21 H -0.225 1.225 22 H -0.183 1.183 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.411 1.004 12.715 12.833 hybrid contribution 0.677 -1.027 -0.314 1.270 sum -0.734 -0.024 12.401 12.423 Atomic orbital electron populations 1.22389 0.97168 1.01521 1.02484 1.22133 0.94057 0.89121 1.01577 1.61397 1.60729 1.02761 1.01645 1.21219 0.98837 0.94052 0.89223 0.92719 1.22058 1.01851 0.99822 0.96450 1.21715 1.00121 0.94515 0.98802 1.22657 0.96716 0.99144 0.85393 1.47603 1.33431 1.19519 1.32437 1.21606 0.91402 0.92291 1.00296 1.21581 0.82934 0.83696 0.79391 1.90474 1.47096 1.80038 1.34454 1.19363 0.91899 0.90718 0.89606 0.97581 1.22406 1.03670 1.33241 1.04336 0.89127 1.27146 1.06376 0.96816 0.91925 1.70797 1.15213 1.43146 1.27801 0.83110 0.71587 0.76580 0.76032 1.19184 1.22519 1.18339 0.93469 0.91845 0.91957 0.93774 0.88607 0.92879 0.90404 0.91926 0.87678 0.93207 0.87439 0.89337 0.92318 0.94335 0.89043 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.94 8.31 71.98 0.60 -5.34 16 2 C 0.06 2.08 5.37 86.30 0.46 2.54 16 3 N -0.54 -22.03 4.43 -858.79 -3.81 -25.83 16 4 C 0.07 2.47 1.43 44.70 0.06 2.53 16 5 H 0.06 1.95 4.03 -2.39 -0.01 1.94 16 6 C -0.14 -3.61 8.15 71.98 0.59 -3.02 16 7 C -0.11 -3.48 5.09 30.20 0.15 -3.33 16 8 C 0.08 2.96 5.88 86.27 0.51 3.47 16 9 N -0.60 -26.55 2.88 -845.40 -2.43 -28.98 16 10 C 0.09 3.29 10.43 127.77 1.33 4.62 16 11 C 0.53 28.51 4.81 88.06 0.42 28.93 16 12 O -0.64 -39.14 15.99 -3.03 -0.05 -39.19 16 13 C 0.19 9.83 1.61 43.65 0.07 9.90 16 14 H 0.01 0.37 7.57 -2.39 -0.02 0.36 16 15 C -0.60 -28.92 2.77 25.60 0.07 -28.85 16 16 H 0.09 4.06 4.60 -2.91 -0.01 4.04 16 17 C -0.02 -1.13 4.95 84.66 0.42 -0.71 16 18 N -0.93 -56.70 13.35 21.45 0.29 -56.42 16 19 Si 1.10 45.74 29.90 68.60 2.05 47.79 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 21 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 23 H 0.05 1.94 6.08 -2.39 -0.01 1.93 16 24 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.06 1.93 5.95 -2.39 -0.01 1.92 16 26 H 0.04 1.70 7.90 -2.38 -0.02 1.68 16 27 H 0.10 2.80 6.11 -2.39 -0.01 2.79 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.06 1.49 5.40 -2.39 -0.01 1.48 16 31 H 0.10 2.40 8.06 -2.39 -0.02 2.38 16 32 H 0.05 1.65 8.05 -2.38 -0.02 1.63 16 33 H 0.11 4.44 4.22 -2.39 -0.01 4.43 16 34 H 0.09 2.57 7.79 -2.39 -0.02 2.55 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.67 7.41 -2.39 -0.02 1.65 16 37 H 0.09 2.77 7.88 -2.39 -0.02 2.75 16 38 H 0.26 17.06 5.52 -92.71 -0.51 16.55 16 Total: -1.00 -70.04 275.77 2.05 -67.99 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 1.31 Total: 23.91 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 4.69 Total: 10.74 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -5.95 Total: -111.23 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.05 Total: -39.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.05 Total: 47.79 kcal Total: -70.04 2.05 -67.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220403847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.108 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds