Wall clock time and date at job start Mon Mar 30 2020 03:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46573 * 2 1 4 4 C 1.32992 * 117.56417 * 269.97904 * 3 2 1 5 5 O 1.21278 * 118.21256 * 354.26863 * 4 3 2 6 6 C 1.50092 * 123.57627 * 174.24979 * 4 3 2 7 7 H 1.08997 * 109.24765 * 291.76418 * 6 4 3 8 8 C 1.50693 * 109.36154 * 172.10230 * 6 4 3 9 9 H 1.08003 * 119.99750 * 359.31084 * 8 6 4 10 10 C 1.37875 * 120.00262 * 179.31764 * 8 6 4 11 11 N 1.31509 * 119.99847 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 120.00177 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46857 * 269.99767 * 12 10 8 14 14 H 1.48495 * 109.47311 * 29.99698 * 12 10 8 15 15 H 1.48502 * 109.47291 * 149.99834 * 12 10 8 16 16 N 1.47173 * 110.14146 * 51.89377 * 6 4 3 17 17 C 1.46520 * 109.87808 * 267.74670 * 16 6 4 18 18 C 1.53074 * 109.83859 * 32.97978 * 17 16 6 19 19 C 1.46017 * 117.56775 * 89.99936 * 3 2 1 20 20 C 1.52999 * 109.24978 * 90.23506 * 19 3 2 21 21 C 1.52997 * 109.25084 * 330.81452 * 19 3 2 22 22 H 1.09004 * 109.47415 * 299.99720 * 1 2 3 23 23 H 1.09000 * 109.47553 * 60.00571 * 1 2 3 24 24 H 1.09005 * 109.46869 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47541 * 240.00186 * 2 1 3 26 26 H 1.08995 * 109.47124 * 119.99372 * 2 1 3 27 27 H 0.97001 * 120.00298 * 180.02562 * 11 10 8 28 28 H 1.00904 * 110.99891 * 30.90106 * 16 6 4 29 29 H 1.08998 * 109.41550 * 153.09890 * 17 16 6 30 30 H 1.09007 * 109.40691 * 272.87006 * 17 16 6 31 31 H 1.09000 * 109.56001 * 180.53017 * 18 17 16 32 32 H 1.08997 * 109.55702 * 300.74085 * 18 17 16 33 33 H 1.08994 * 109.47123 * 173.86164 * 20 19 3 34 34 H 1.09003 * 109.47287 * 293.86600 * 20 19 3 35 35 H 1.09007 * 109.47078 * 53.86193 * 20 19 3 36 36 H 1.09003 * 109.46791 * 298.88699 * 21 19 3 37 37 H 1.09000 * 109.47191 * 58.87877 * 21 19 3 38 38 H 1.08997 * 109.47190 * 178.88277 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2237 1.9614 -1.1790 5 8 2.0989 1.2870 -2.1792 6 6 2.6012 3.4052 -1.3391 7 1 1.7597 4.0316 -1.0432 8 6 2.9419 3.6754 -2.7819 9 1 2.8998 2.8749 -3.5058 10 6 3.3076 4.9444 -3.1780 11 7 3.3586 5.9191 -2.2966 12 14 3.7293 5.2795 -4.9666 13 1 5.1826 5.0625 -5.1816 14 1 2.9571 4.3581 -5.8383 15 1 3.3836 6.6842 -5.3020 16 7 3.7650 3.7213 -0.4955 17 6 3.3154 4.2147 0.8088 18 6 2.0049 3.5276 1.2007 19 6 2.2434 2.0184 1.2944 20 6 3.6848 1.7621 1.7388 21 6 1.2846 1.4193 2.3252 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.6155 6.8120 -2.5753 28 1 4.3647 2.9167 -0.3906 29 1 4.0759 3.9994 1.5594 30 1 3.1573 5.2919 0.7537 31 1 1.6699 3.9047 2.1669 32 1 1.2457 3.7324 0.4459 33 1 3.8899 2.3252 2.6492 34 1 3.8220 0.6980 1.9311 35 1 4.3695 2.0805 0.9526 36 1 0.2561 1.6082 2.0175 37 1 1.4513 0.3444 2.3947 38 1 1.4632 1.8784 3.2975 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220403943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:56 Heat of formation + Delta-G solvation = -27.411170 kcal Electronic energy + Delta-G solvation = -19149.020636 eV Core-core repulsion = 16412.610740 eV Total energy + Delta-G solvation = -2736.409896 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.01727 -38.59555 -37.19157 -34.48998 -33.31814 -31.48763 -30.00711 -28.77337 -27.62250 -25.80115 -23.55011 -23.49352 -21.49962 -19.36577 -18.59557 -17.69078 -17.12802 -16.63806 -16.41417 -16.19534 -15.09703 -14.82295 -14.77042 -14.51184 -14.17970 -13.84706 -13.62871 -13.27392 -13.15610 -12.84437 -12.76646 -12.75003 -12.67543 -12.44173 -12.24437 -11.95721 -11.72007 -11.62106 -11.43651 -11.05076 -10.58700 -10.47132 -9.61933 -8.68691 -7.99721 -6.13676 1.41352 1.42385 1.53558 1.85562 2.16258 2.51271 3.22864 3.69286 3.82080 3.90159 3.93296 4.10352 4.25924 4.35597 4.43176 4.55419 4.60242 4.64929 4.77169 4.79945 4.89725 4.95230 5.02892 5.03466 5.11172 5.16038 5.20704 5.28705 5.41995 5.47894 5.72667 5.86875 6.06215 6.56457 6.66929 6.93378 7.07780 7.46553 7.56448 9.05292 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.009167 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.768826 B = 3053.602534 C = 3629.929377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.598 5.598 4 C 0.486 3.514 5 O -0.593 6.593 6 C 0.217 3.783 7 H 0.041 0.959 8 C -0.538 4.538 9 H 0.041 0.959 10 C 0.041 3.959 11 N -0.877 5.877 12 Si 0.948 3.052 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.276 1.276 16 N -0.650 5.650 17 C 0.057 3.943 18 C -0.159 4.159 19 C 0.160 3.840 20 C -0.162 4.162 21 C -0.149 4.149 22 H 0.078 0.922 23 H 0.021 0.979 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.107 0.893 27 H 0.257 0.743 28 H 0.315 0.685 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -7.888 14.535 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.331 5.331 4 C 0.274 3.726 5 O -0.472 6.472 6 C 0.106 3.894 7 H 0.058 0.942 8 C -0.577 4.577 9 H 0.059 0.941 10 C -0.162 4.162 11 N -0.513 5.513 12 Si 0.774 3.226 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.201 1.201 16 N -0.282 5.282 17 C -0.072 4.072 18 C -0.198 4.198 19 C 0.077 3.923 20 C -0.220 4.220 21 C -0.206 4.206 22 H 0.097 0.903 23 H 0.040 0.960 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.066 0.934 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.790 -7.376 13.783 15.879 hybrid contribution -0.119 -0.343 -1.096 1.155 sum -2.910 -7.719 12.686 15.133 Atomic orbital electron populations 1.22252 0.95197 1.02981 1.01627 1.21554 0.95159 0.83188 1.02830 1.47884 1.65115 1.14671 1.05476 1.22032 0.75493 0.92495 0.82603 1.90501 1.53421 1.64756 1.38566 1.19097 0.91038 0.85078 0.94154 0.94202 1.21130 1.48618 0.94969 0.92993 0.94061 1.25488 0.94503 0.95799 1.00406 1.70122 1.46224 1.00756 1.34245 0.85758 0.78401 0.77108 0.81352 1.20242 1.20755 1.20089 1.61267 1.18097 1.36527 1.12298 1.22136 0.95434 0.98862 0.90809 1.22789 0.99659 0.94183 1.03155 1.20669 0.97056 0.92441 0.82170 1.22478 0.94543 1.02857 1.02123 1.22336 0.98226 1.02079 0.97957 0.90287 0.96018 0.89729 0.92887 0.87495 0.93421 0.86540 0.89538 0.93414 0.87487 0.93604 0.88756 0.91305 0.93862 0.91990 0.90336 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.99 71.98 0.72 -3.52 16 2 C 0.10 2.79 5.29 86.38 0.46 3.24 16 3 N -0.60 -20.97 2.32 -779.13 -1.81 -22.77 16 4 C 0.49 23.29 6.68 87.74 0.59 23.88 16 5 O -0.59 -33.10 14.35 -3.02 -0.04 -33.15 16 6 C 0.22 11.36 1.86 43.18 0.08 11.44 16 7 H 0.04 2.26 5.81 -2.39 -0.01 2.25 16 8 C -0.54 -32.69 8.52 25.60 0.22 -32.47 16 9 H 0.04 2.70 6.69 -2.91 -0.02 2.68 16 10 C 0.04 2.42 5.39 84.65 0.46 2.88 16 11 N -0.88 -51.37 12.77 21.45 0.27 -51.10 16 12 Si 0.95 46.90 29.54 68.60 2.03 48.92 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.28 -14.18 7.11 99.48 0.71 -13.48 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 N -0.65 -30.02 5.82 -500.51 -2.91 -32.93 16 17 C 0.06 2.07 5.90 86.40 0.51 2.58 16 18 C -0.16 -4.85 4.93 30.64 0.15 -4.70 16 19 C 0.16 4.25 0.83 3.72 0.00 4.25 16 20 C -0.16 -3.74 7.35 71.98 0.53 -3.21 16 21 C -0.15 -2.65 6.93 71.98 0.50 -2.15 16 22 H 0.08 1.73 5.27 -2.39 -0.01 1.72 16 23 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.05 1.88 7.05 -2.39 -0.02 1.86 16 26 H 0.11 2.27 6.40 -2.39 -0.02 2.25 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.31 13.86 5.93 -89.69 -0.53 13.33 16 29 H 0.09 2.53 6.23 -2.39 -0.01 2.51 16 30 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.11 2.47 7.82 -2.39 -0.02 2.45 16 32 H 0.05 1.75 5.57 -2.39 -0.01 1.74 16 33 H 0.09 1.68 7.57 -2.39 -0.02 1.66 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.26 4.67 -2.38 -0.01 1.24 16 36 H 0.06 1.18 6.15 -2.39 -0.01 1.16 16 37 H 0.08 1.17 6.23 -2.39 -0.01 1.15 16 38 H 0.09 1.21 8.11 -2.39 -0.02 1.19 16 Total: -1.00 -73.05 280.13 2.29 -70.76 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.54 Total: 18.04 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.21 Total: 2.23 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.44 Total: -106.81 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.04 Total: -33.15 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -73.05 2.29 -70.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220403943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.349 kcal (2) G-P(sol) polarization free energy of solvation -73.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds