Wall clock time and date at job start Mon Mar 30 2020 03:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46892 * 109.47320 * 2 1 4 4 C 1.46918 * 111.01204 * 54.09866 * 3 2 1 5 5 H 1.09001 * 109.61463 * 158.98067 * 4 3 2 6 6 C 1.50701 * 109.74981 * 279.40007 * 4 3 2 7 7 H 1.07993 * 120.00052 * 359.26002 * 6 4 3 8 8 C 1.37877 * 120.00181 * 179.25148 * 6 4 3 9 9 N 1.31517 * 119.99617 * 0.02562 * 8 6 4 10 10 Si 1.86793 * 120.00230 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47182 * 90.00231 * 10 8 6 12 12 H 1.48501 * 109.47650 * 210.00239 * 10 8 6 13 13 H 1.48506 * 109.47221 * 330.00285 * 10 8 6 14 14 C 1.51403 * 108.65993 * 39.23105 * 4 3 2 15 15 O 1.21280 * 119.88603 * 251.34828 * 14 4 3 16 16 N 1.33613 * 120.23398 * 71.36982 * 14 4 3 17 17 C 1.47249 * 119.84342 * 359.44963 * 16 14 4 18 18 C 1.53114 * 108.40147 * 290.01426 * 17 16 14 19 19 C 1.45755 * 111.00454 * 179.97438 * 3 2 1 20 20 C 1.52994 * 108.59570 * 181.54101 * 19 3 2 21 21 C 1.53000 * 108.58951 * 63.84443 * 19 3 2 22 22 H 1.09004 * 109.47279 * 293.81292 * 1 2 3 23 23 H 1.09002 * 109.47099 * 53.81484 * 1 2 3 24 24 H 1.08999 * 109.47307 * 173.81665 * 1 2 3 25 25 H 1.09007 * 109.46944 * 239.99737 * 2 1 3 26 26 H 1.09004 * 109.47291 * 119.99893 * 2 1 3 27 27 H 0.97011 * 119.99692 * 179.97438 * 9 8 6 28 28 H 0.96993 * 120.07878 * 179.43046 * 16 14 4 29 29 H 1.09005 * 109.67729 * 170.28960 * 17 16 14 30 30 H 1.08995 * 109.71072 * 49.76146 * 17 16 14 31 31 H 1.08994 * 109.21994 * 325.26316 * 18 17 16 32 32 H 1.09007 * 109.18548 * 205.89887 * 18 17 16 33 33 H 1.08994 * 109.47435 * 185.50690 * 20 19 3 34 34 H 1.09002 * 109.46962 * 305.50465 * 20 19 3 35 35 H 1.08999 * 109.46982 * 65.50111 * 20 19 3 36 36 H 1.08998 * 109.47351 * 295.61553 * 21 19 3 37 37 H 1.09003 * 109.47401 * 55.61605 * 21 19 3 38 38 H 1.08997 * 109.47484 * 175.61842 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4371 2.1497 1.1109 5 1 2.0615 3.0170 1.3252 6 6 0.0485 2.6050 0.7427 7 1 -0.3599 2.3625 -0.2272 8 6 -0.7008 3.3309 1.6442 9 7 -0.2033 3.6264 2.8253 10 14 -2.4222 3.8946 1.1881 11 1 -3.4053 2.8554 1.5867 12 1 -2.7307 5.1643 1.8939 13 1 -2.4994 4.1124 -0.2788 14 6 1.3718 1.2568 2.3319 15 8 0.2995 0.8502 2.7266 16 7 2.4913 0.9156 2.9765 17 6 3.7938 1.4002 2.4899 18 6 4.1104 0.6921 1.1697 19 6 3.4767 1.4238 0.0006 20 6 3.9257 2.8859 0.0396 21 6 3.9819 0.7977 -1.3008 22 1 -0.3634 0.4149 0.9402 23 1 -0.3633 0.6067 -0.8295 24 1 -0.3634 -1.0217 -0.1107 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 -0.7303 4.1375 3.4594 28 1 2.4461 0.3502 3.7634 29 1 4.5674 1.1726 3.2232 30 1 3.7479 2.4770 2.3270 31 1 3.7241 -0.3264 1.2073 32 1 5.1910 0.6611 1.0300 33 1 5.0101 2.9358 -0.0581 34 1 3.4614 3.4305 -0.7826 35 1 3.6252 3.3331 0.9871 36 1 3.7047 -0.2561 -1.3285 37 1 3.5341 1.3136 -2.1501 38 1 5.0669 0.8893 -1.3509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220404324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:48 Heat of formation + Delta-G solvation = -9.682117 kcal Electronic energy + Delta-G solvation = -19631.448711 eV Core-core repulsion = 16895.807605 eV Total energy + Delta-G solvation = -2735.641106 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22019 -36.89603 -34.69132 -32.82262 -32.13951 -29.41928 -28.34750 -27.09836 -26.26144 -23.28987 -22.83393 -21.32772 -19.12336 -17.77670 -16.42851 -15.86681 -15.81834 -15.35780 -14.77193 -14.24333 -14.15191 -13.20636 -12.75487 -12.55053 -12.36210 -12.07341 -11.83536 -11.66318 -11.53097 -11.25645 -11.14771 -10.83982 -10.79349 -10.62299 -10.57138 -10.33466 -10.11278 -9.99528 -9.34776 -9.06093 -8.55022 -8.25959 -7.95481 -7.20380 -5.95219 -3.91426 3.41043 3.48022 3.49712 4.08853 4.32377 4.52640 4.91095 5.10142 5.25695 5.39757 5.48042 5.66025 5.79143 5.85225 5.96678 5.99863 6.08597 6.12272 6.21648 6.25879 6.30078 6.37527 6.43319 6.53888 6.69618 6.77791 6.85698 7.08114 7.13207 7.73853 7.80503 7.94785 8.09424 8.12359 8.35725 8.62983 9.08845 9.68936 9.78429 11.16196 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.010777 C = 0.010165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.839063 B = 2597.611591 C = 2753.976304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.058 3.942 3 N -0.508 5.508 4 C 0.205 3.795 5 H 0.063 0.937 6 C -0.488 4.488 7 H 0.073 0.927 8 C 0.071 3.929 9 N -0.885 5.885 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.273 1.273 14 C 0.506 3.494 15 O -0.524 6.524 16 N -0.752 5.752 17 C 0.108 3.892 18 C -0.165 4.165 19 C 0.102 3.898 20 C -0.148 4.148 21 C -0.135 4.135 22 H 0.115 0.885 23 H 0.057 0.943 24 H 0.023 0.977 25 H 0.054 0.946 26 H 0.023 0.977 27 H 0.259 0.741 28 H 0.377 0.623 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.274 -4.110 -3.663 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.070 4.070 3 N -0.233 5.233 4 C 0.095 3.905 5 H 0.080 0.920 6 C -0.526 4.526 7 H 0.091 0.909 8 C -0.132 4.132 9 N -0.523 5.523 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.216 1.216 13 H -0.198 1.198 14 C 0.293 3.707 15 O -0.396 6.396 16 N -0.407 5.407 17 C -0.017 4.017 18 C -0.205 4.205 19 C 0.012 3.988 20 C -0.205 4.205 21 C -0.193 4.193 22 H 0.134 0.866 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.211 0.789 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.461 -3.863 -3.908 10.941 hybrid contribution -0.446 -0.384 1.102 1.249 sum 9.015 -4.247 -2.805 10.353 Atomic orbital electron populations 1.22421 0.94181 0.98661 1.07154 1.22000 0.97241 0.89408 0.98351 1.61955 1.03497 1.12266 1.45573 1.19870 0.97706 0.90999 0.81886 0.91995 1.20813 0.97929 1.32675 1.01188 0.90875 1.24861 0.98197 0.95470 0.94678 1.69878 1.37413 1.38711 1.06280 0.86501 0.84848 0.77711 0.78353 1.20710 1.21561 1.19825 1.22627 0.82180 0.79797 0.86128 1.90456 1.28622 1.53814 1.66736 1.46451 1.07104 1.54903 1.32270 1.21716 0.85415 0.99714 0.94815 1.22489 1.00758 1.00823 0.96471 1.20609 0.89145 0.95520 0.93569 1.22138 0.99442 0.95644 1.03263 1.21911 0.99431 1.00330 0.97607 0.86644 0.92410 0.95786 0.92738 0.95947 0.93090 0.78938 0.91234 0.90311 0.91538 0.91298 0.93200 0.91563 0.91502 0.93233 0.91858 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 8.37 37.16 0.31 -3.39 16 2 C 0.06 1.16 4.52 -3.83 -0.02 1.14 16 3 N -0.51 -10.40 4.19 -214.97 -0.90 -11.30 16 4 C 0.20 4.96 1.61 -69.66 -0.11 4.84 16 5 H 0.06 1.57 4.74 -51.93 -0.25 1.32 16 6 C -0.49 -13.30 5.99 -34.44 -0.21 -13.51 16 7 H 0.07 2.01 6.03 -52.49 -0.32 1.69 16 8 C 0.07 2.01 4.82 -17.82 -0.09 1.93 16 9 N -0.89 -26.01 12.02 55.43 0.67 -25.35 16 10 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.51 12.41 3.93 -11.16 -0.04 12.36 16 15 O -0.52 -14.89 13.78 5.56 0.08 -14.81 16 16 N -0.75 -14.98 5.18 -59.75 -0.31 -15.29 16 17 C 0.11 1.73 6.39 -3.57 -0.02 1.70 16 18 C -0.16 -2.44 4.24 -27.29 -0.12 -2.55 16 19 C 0.10 1.67 0.55 -132.84 -0.07 1.60 16 20 C -0.15 -2.31 7.49 37.15 0.28 -2.03 16 21 C -0.14 -1.88 8.01 37.16 0.30 -1.58 16 22 H 0.12 3.02 3.53 -51.93 -0.18 2.84 16 23 H 0.06 1.28 6.80 -51.93 -0.35 0.93 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.97 6.40 -51.92 -0.33 0.64 16 26 H 0.02 0.47 5.16 -51.93 -0.27 0.20 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.38 6.98 8.92 -40.82 -0.36 6.62 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.35 4.75 -51.93 -0.25 1.10 16 31 H 0.07 1.05 6.32 -51.93 -0.33 0.72 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.15 4.09 -51.93 -0.21 0.94 16 36 H 0.05 0.68 6.60 -51.93 -0.34 0.34 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -31.16 270.57 -6.49 -37.65 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.29 Total: 7.28 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.21 Total: 0.51 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.55 Total: -51.94 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.08 Total: -14.81 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.16 -6.49 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220404324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.968 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds