Wall clock time and date at job start Mon Mar 30 2020 03:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46972 * 2 1 4 4 C 1.45749 * 110.99959 * 44.18157 * 3 2 1 5 5 C 1.51686 * 113.94336 * 57.29411 * 4 3 2 6 6 H 1.08994 * 109.22112 * 306.44114 * 5 4 3 7 7 C 1.52993 * 109.18801 * 187.07344 * 5 4 3 8 8 C 1.53118 * 110.74951 * 66.76892 * 5 4 3 9 9 N 1.47247 * 108.40239 * 274.41217 * 8 5 4 10 10 C 1.46501 * 120.07684 * 249.97361 * 9 8 5 11 11 C 1.33607 * 119.84888 * 69.99794 * 9 8 5 12 12 O 1.21280 * 119.88594 * 180.54138 * 11 9 8 13 13 C 1.46878 * 110.99418 * 169.99734 * 3 2 1 14 14 H 1.09005 * 109.73466 * 80.61016 * 13 3 2 15 15 C 1.50706 * 109.60230 * 201.00219 * 13 3 2 16 16 H 1.08006 * 119.99339 * 356.51210 * 15 13 3 17 17 C 1.37871 * 120.00097 * 176.50571 * 15 13 3 18 18 N 1.31513 * 120.00298 * 359.72955 * 17 15 13 19 19 Si 1.86800 * 119.99745 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47260 * 269.72470 * 19 17 15 21 21 H 1.48505 * 109.47445 * 29.72629 * 19 17 15 22 22 H 1.48508 * 109.47069 * 149.72577 * 19 17 15 23 23 H 1.08999 * 109.46993 * 299.99607 * 1 2 3 24 24 H 1.09004 * 109.46851 * 59.99890 * 1 2 3 25 25 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46742 * 240.00042 * 2 1 3 27 27 H 1.09004 * 109.46851 * 120.00110 * 2 1 3 28 28 H 1.09006 * 108.59091 * 296.14158 * 4 3 2 29 29 H 1.09007 * 108.47528 * 178.36871 * 4 3 2 30 30 H 1.09000 * 109.47230 * 298.75886 * 7 5 4 31 31 H 1.08999 * 109.47342 * 58.75866 * 7 5 4 32 32 H 1.09004 * 109.47284 * 178.75841 * 7 5 4 33 33 H 1.09002 * 109.67568 * 154.68530 * 8 5 4 34 34 H 1.08996 * 109.71094 * 34.16325 * 8 5 4 35 35 H 1.08996 * 109.47212 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46790 * 300.02322 * 10 9 8 37 37 H 1.09002 * 109.46802 * 60.02076 * 10 9 8 38 38 H 0.97000 * 119.99522 * 0.27196 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2738 2.2026 0.9483 5 6 1.3106 1.6819 2.3725 6 1 0.9887 0.6406 2.3822 7 6 0.3584 2.5114 3.2361 8 6 2.7261 1.7774 2.9485 9 7 3.4703 0.5690 2.5558 10 6 3.8247 -0.4346 3.5624 11 6 3.8221 0.3903 1.2793 12 8 4.4265 -0.6094 0.9533 13 6 3.4683 1.4310 0.2382 14 1 4.0007 1.2169 -0.6886 15 6 3.8551 2.7988 0.7388 16 1 3.1099 3.5769 0.8143 17 6 5.1603 3.0568 1.1005 18 7 6.0666 2.1078 1.0137 19 14 5.6396 4.7521 1.7216 20 1 6.0572 5.5994 0.5758 21 1 4.4767 5.3773 2.4016 22 1 6.7659 4.6274 2.6815 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.2345 2.2514 0.6230 29 1 1.6883 3.2107 0.9361 30 1 0.6829 3.5520 3.2380 31 1 -0.6508 2.4464 2.8295 32 1 0.3646 2.1270 4.2560 33 1 2.6765 1.8407 4.0356 34 1 3.2256 2.6612 2.5519 35 1 4.3692 -1.2501 3.0864 36 1 4.4520 0.0236 4.3271 37 1 2.9166 -0.8239 4.0227 38 1 5.8176 1.2275 0.6915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220406470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:23 Heat of formation + Delta-G solvation = -16.002971 kcal Electronic energy + Delta-G solvation = -19623.490661 eV Core-core repulsion = 16887.575462 eV Total energy + Delta-G solvation = -2735.915199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24040 -36.95285 -34.95167 -33.41518 -32.57185 -30.28768 -27.49353 -26.31262 -25.44314 -24.87124 -22.60867 -21.58387 -19.10525 -18.22333 -17.24791 -16.36455 -15.72474 -15.10611 -14.24181 -14.04307 -13.90708 -13.74919 -13.43192 -12.72327 -12.55060 -12.37445 -12.14281 -11.94269 -11.60747 -11.34520 -11.28457 -11.09665 -10.94621 -10.88685 -10.72976 -10.60253 -10.23973 -10.07098 -9.96942 -9.26831 -8.52222 -8.45012 -7.71381 -7.33716 -6.50838 -4.25743 3.32531 3.34305 3.50091 3.75404 4.05848 4.35435 4.91356 5.15726 5.32422 5.34112 5.48193 5.57810 5.63679 5.76629 5.84098 5.92507 5.95088 6.00498 6.12343 6.16777 6.21798 6.27517 6.36586 6.41484 6.48300 6.54988 6.61651 6.71647 6.92799 7.17053 7.45266 7.52093 7.84319 8.14830 8.25246 8.49618 8.62330 9.33344 9.40907 10.84429 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.012231 C = 0.011178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.970463 B = 2288.678861 C = 2504.308549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.138 4.138 6 H 0.060 0.940 7 C -0.136 4.136 8 C 0.096 3.904 9 N -0.602 5.602 10 C 0.082 3.918 11 C 0.509 3.491 12 O -0.587 6.587 13 C 0.189 3.811 14 H 0.064 0.936 15 C -0.609 4.609 16 H 0.078 0.922 17 C 0.024 3.976 18 N -0.891 5.891 19 Si 1.067 2.933 20 H -0.284 1.284 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.042 0.958 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 0.781 4.707 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 N -0.238 5.238 4 C -0.071 4.071 5 C -0.159 4.159 6 H 0.078 0.922 7 C -0.195 4.195 8 C -0.026 4.026 9 N -0.334 5.334 10 C -0.062 4.062 11 C 0.298 3.702 12 O -0.467 6.467 13 C 0.078 3.922 14 H 0.082 0.918 15 C -0.646 4.646 16 H 0.096 0.904 17 C -0.185 4.185 18 N -0.525 5.525 19 Si 0.895 3.105 20 H -0.210 1.210 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.831 1.308 4.617 10.050 hybrid contribution -1.058 -1.458 0.416 1.849 sum -9.889 -0.150 5.033 11.097 Atomic orbital electron populations 1.21941 0.95808 1.00864 1.02185 1.22150 0.94810 0.91024 1.00590 1.61839 1.04419 1.08724 1.48865 1.21814 0.97192 0.99953 0.88118 1.21920 0.96246 0.99876 0.97905 0.92185 1.21699 0.98522 1.00411 0.98845 1.22570 0.90976 0.91374 0.97712 1.47565 1.56554 1.21480 1.07816 1.21489 0.99214 0.93446 0.92043 1.22524 0.76422 0.87042 0.84176 1.90532 1.43186 1.31816 1.81148 1.20003 0.84841 0.94546 0.92762 0.91829 1.21949 0.97596 0.95512 1.49525 0.90439 1.25901 0.92442 1.05011 0.95153 1.70653 1.36584 1.04815 1.40472 0.83564 0.76054 0.73960 0.76958 1.20991 1.20961 1.20921 0.92322 0.92165 0.93200 0.91506 0.94930 0.92537 0.88756 0.92280 0.93082 0.93283 0.92755 0.84793 0.90409 0.93302 0.93934 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.89 37.16 0.33 -1.95 16 2 C 0.04 0.82 4.92 -3.82 -0.02 0.80 16 3 N -0.52 -10.91 4.95 -230.82 -1.14 -12.06 16 4 C 0.06 1.05 3.80 -5.11 -0.02 1.03 16 5 C -0.14 -2.33 1.89 -91.23 -0.17 -2.50 16 6 H 0.06 1.06 5.83 -51.93 -0.30 0.76 16 7 C -0.14 -1.80 8.99 37.15 0.33 -1.46 16 8 C 0.10 1.86 5.32 -3.57 -0.02 1.84 16 9 N -0.60 -13.31 2.77 -180.93 -0.50 -13.81 16 10 C 0.08 1.57 10.62 59.85 0.64 2.21 16 11 C 0.51 12.89 2.14 -11.16 -0.02 12.87 16 12 O -0.59 -16.63 15.71 5.56 0.09 -16.54 16 13 C 0.19 4.73 2.47 -69.68 -0.17 4.56 16 14 H 0.06 1.81 8.10 -51.93 -0.42 1.39 16 15 C -0.61 -15.28 4.91 -34.44 -0.17 -15.45 16 16 H 0.08 1.85 5.05 -52.48 -0.26 1.59 16 17 C 0.02 0.63 4.94 -17.82 -0.09 0.54 16 18 N -0.89 -26.35 13.34 55.43 0.74 -25.61 16 19 Si 1.07 23.26 29.90 -169.99 -5.08 18.18 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H 0.06 0.85 5.32 -51.93 -0.28 0.57 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.03 0.70 5.30 -51.93 -0.28 0.43 16 28 H 0.06 0.92 6.37 -51.93 -0.33 0.59 16 29 H 0.09 1.84 5.17 -51.92 -0.27 1.57 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 33 H 0.05 0.92 7.71 -51.93 -0.40 0.52 16 34 H 0.13 2.94 4.22 -51.93 -0.22 2.72 16 35 H 0.08 1.62 6.88 -51.93 -0.36 1.27 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.28 8.81 5.48 -40.82 -0.22 8.59 16 LS Contribution 277.41 15.07 4.18 4.18 Total: -1.00 -30.37 277.41 -6.62 -36.99 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.51 Total: 6.19 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.62 Total: 2.48 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.90 Total: -51.48 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.09 Total: -16.54 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.08 Total: 18.18 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.37 -6.62 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220406470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.988 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds