Wall clock time and date at job start Mon Mar 30 2020 03:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46972 * 2 1 4 4 C 1.45749 * 110.99959 * 44.18157 * 3 2 1 5 5 C 1.51686 * 113.94336 * 57.29411 * 4 3 2 6 6 H 1.08994 * 109.22112 * 306.44114 * 5 4 3 7 7 C 1.52993 * 109.18801 * 187.07344 * 5 4 3 8 8 C 1.53118 * 110.74951 * 66.76892 * 5 4 3 9 9 N 1.47247 * 108.40239 * 274.41217 * 8 5 4 10 10 C 1.46501 * 120.07684 * 249.97361 * 9 8 5 11 11 C 1.33607 * 119.84888 * 69.99794 * 9 8 5 12 12 O 1.21280 * 119.88594 * 180.54138 * 11 9 8 13 13 C 1.46878 * 110.99418 * 169.99734 * 3 2 1 14 14 H 1.09005 * 109.73466 * 80.61016 * 13 3 2 15 15 C 1.50706 * 109.60230 * 201.00219 * 13 3 2 16 16 H 1.08006 * 119.99339 * 356.51210 * 15 13 3 17 17 C 1.37871 * 120.00097 * 176.50571 * 15 13 3 18 18 N 1.31513 * 120.00298 * 359.72955 * 17 15 13 19 19 Si 1.86800 * 119.99745 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47260 * 269.72470 * 19 17 15 21 21 H 1.48505 * 109.47445 * 29.72629 * 19 17 15 22 22 H 1.48508 * 109.47069 * 149.72577 * 19 17 15 23 23 H 1.08999 * 109.46993 * 299.99607 * 1 2 3 24 24 H 1.09004 * 109.46851 * 59.99890 * 1 2 3 25 25 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46742 * 240.00042 * 2 1 3 27 27 H 1.09004 * 109.46851 * 120.00110 * 2 1 3 28 28 H 1.09006 * 108.59091 * 296.14158 * 4 3 2 29 29 H 1.09007 * 108.47528 * 178.36871 * 4 3 2 30 30 H 1.09000 * 109.47230 * 298.75886 * 7 5 4 31 31 H 1.08999 * 109.47342 * 58.75866 * 7 5 4 32 32 H 1.09004 * 109.47284 * 178.75841 * 7 5 4 33 33 H 1.09002 * 109.67568 * 154.68530 * 8 5 4 34 34 H 1.08996 * 109.71094 * 34.16325 * 8 5 4 35 35 H 1.08996 * 109.47212 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46790 * 300.02322 * 10 9 8 37 37 H 1.09002 * 109.46802 * 60.02076 * 10 9 8 38 38 H 0.97000 * 119.99522 * 0.27196 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2738 2.2026 0.9483 5 6 1.3106 1.6819 2.3725 6 1 0.9887 0.6406 2.3822 7 6 0.3584 2.5114 3.2361 8 6 2.7261 1.7774 2.9485 9 7 3.4703 0.5690 2.5558 10 6 3.8247 -0.4346 3.5624 11 6 3.8221 0.3903 1.2793 12 8 4.4265 -0.6094 0.9533 13 6 3.4683 1.4310 0.2382 14 1 4.0007 1.2169 -0.6886 15 6 3.8551 2.7988 0.7388 16 1 3.1099 3.5769 0.8143 17 6 5.1603 3.0568 1.1005 18 7 6.0666 2.1078 1.0137 19 14 5.6396 4.7521 1.7216 20 1 6.0572 5.5994 0.5758 21 1 4.4767 5.3773 2.4016 22 1 6.7659 4.6274 2.6815 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.2345 2.2514 0.6230 29 1 1.6883 3.2107 0.9361 30 1 0.6829 3.5520 3.2380 31 1 -0.6508 2.4464 2.8295 32 1 0.3646 2.1270 4.2560 33 1 2.6765 1.8407 4.0356 34 1 3.2256 2.6612 2.5519 35 1 4.3692 -1.2501 3.0864 36 1 4.4520 0.0236 4.3271 37 1 2.9166 -0.8239 4.0227 38 1 5.8176 1.2275 0.6915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220406470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:23 Heat of formation + Delta-G solvation = -38.302146 kcal Electronic energy + Delta-G solvation = -19624.457626 eV Core-core repulsion = 16887.575462 eV Total energy + Delta-G solvation = -2736.882164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.00166 -38.73381 -36.62842 -35.36880 -34.09742 -31.93341 -29.12941 -27.69090 -27.27172 -26.50433 -24.38023 -23.06599 -20.65834 -20.03049 -19.10530 -18.10146 -17.47191 -16.83312 -15.99360 -15.67757 -15.46629 -15.39938 -14.92262 -14.35481 -14.28787 -13.81768 -13.69534 -13.52286 -13.12454 -12.89917 -12.82042 -12.64931 -12.39449 -12.35162 -12.28120 -12.13923 -11.88271 -11.56358 -11.53762 -11.15852 -10.49689 -10.41179 -9.45714 -9.05729 -8.62934 -6.36597 1.56723 1.62462 1.79600 1.84919 2.35950 2.55970 3.14716 3.26715 3.85542 3.97518 4.03211 4.18788 4.19008 4.36144 4.43842 4.50709 4.53898 4.65635 4.71487 4.76934 4.82476 4.90776 4.91810 5.02491 5.13054 5.18926 5.20575 5.25611 5.37852 5.59752 5.65220 5.81715 5.94545 6.35367 6.39807 6.48826 6.66806 7.36154 7.45528 8.70116 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.012231 C = 0.011178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.970463 B = 2288.678861 C = 2504.308549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.044 3.956 3 N -0.523 5.523 4 C 0.055 3.945 5 C -0.130 4.130 6 H 0.056 0.944 7 C -0.129 4.129 8 C 0.087 3.913 9 N -0.603 5.603 10 C 0.079 3.921 11 C 0.508 3.492 12 O -0.633 6.633 13 C 0.187 3.813 14 H 0.009 0.991 15 C -0.591 4.591 16 H 0.095 0.905 17 C -0.025 4.025 18 N -0.932 5.932 19 Si 1.112 2.888 20 H -0.278 1.278 21 H -0.243 1.243 22 H -0.295 1.295 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.011 0.989 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 2.508 6.693 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 N -0.246 5.246 4 C -0.073 4.073 5 C -0.151 4.151 6 H 0.075 0.925 7 C -0.187 4.187 8 C -0.034 4.034 9 N -0.333 5.333 10 C -0.063 4.063 11 C 0.298 3.702 12 O -0.517 6.517 13 C 0.076 3.924 14 H 0.027 0.973 15 C -0.628 4.628 16 H 0.113 0.887 17 C -0.225 4.225 18 N -0.569 5.569 19 Si 0.933 3.067 20 H -0.204 1.204 21 H -0.167 1.167 22 H -0.221 1.221 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.985 3.065 6.633 14.036 hybrid contribution -0.151 -2.033 -0.232 2.052 sum -12.136 1.031 6.401 13.759 Atomic orbital electron populations 1.21863 0.91719 1.02629 1.03264 1.22164 0.98012 0.89655 0.98608 1.61766 1.02328 1.10143 1.50369 1.21941 0.98046 0.98525 0.88748 1.21822 0.95407 1.00455 0.97384 0.92528 1.21658 0.98299 0.99848 0.98896 1.22709 0.91882 0.89102 0.99680 1.47699 1.55784 1.22706 1.07119 1.21646 1.01030 0.92294 0.91368 1.22368 0.76057 0.86306 0.85497 1.90488 1.45454 1.33618 1.82156 1.19725 0.87163 0.94811 0.90672 0.97314 1.22195 0.97692 0.95614 1.47280 0.88719 1.27365 0.92891 1.07419 0.94843 1.70809 1.37706 1.04582 1.43804 0.83048 0.76856 0.70153 0.76687 1.20427 1.16655 1.22095 0.90924 0.91172 0.91252 0.93603 0.97067 0.89474 0.89888 0.91734 0.91019 0.91689 0.89639 0.87189 0.92955 0.91849 0.90122 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.89 71.98 0.64 -3.13 16 2 C 0.04 1.70 4.92 86.31 0.42 2.12 16 3 N -0.52 -22.10 4.95 -884.18 -4.38 -26.48 16 4 C 0.05 1.85 3.80 86.09 0.33 2.18 16 5 C -0.13 -3.91 1.89 -11.19 -0.02 -3.93 16 6 H 0.06 1.79 5.83 -2.39 -0.01 1.78 16 7 C -0.13 -2.70 8.99 71.98 0.65 -2.05 16 8 C 0.09 3.17 5.32 86.28 0.46 3.63 16 9 N -0.60 -26.46 2.77 -845.38 -2.34 -28.80 16 10 C 0.08 2.99 10.62 127.77 1.36 4.35 16 11 C 0.51 26.73 2.14 88.06 0.19 26.92 16 12 O -0.63 -38.21 15.71 -3.03 -0.05 -38.26 16 13 C 0.19 9.78 2.47 43.65 0.11 9.88 16 14 H 0.01 0.56 8.10 -2.38 -0.02 0.54 16 15 C -0.59 -29.86 4.91 25.60 0.13 -29.73 16 16 H 0.10 4.39 5.05 -2.91 -0.01 4.38 16 17 C -0.02 -1.33 4.94 84.65 0.42 -0.91 16 18 N -0.93 -57.50 13.34 21.44 0.29 -57.21 16 19 Si 1.11 46.09 29.90 68.60 2.05 48.14 16 20 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 22 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 23 H 0.07 1.79 5.32 -2.39 -0.01 1.78 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.01 0.49 5.30 -2.39 -0.01 0.48 16 28 H 0.09 2.45 6.37 -2.38 -0.02 2.44 16 29 H 0.08 3.01 5.17 -2.38 -0.01 2.99 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.19 8.11 -2.38 -0.02 1.18 16 33 H 0.09 2.57 7.71 -2.39 -0.02 2.55 16 34 H 0.11 4.61 4.22 -2.39 -0.01 4.60 16 35 H 0.05 2.23 6.88 -2.39 -0.02 2.22 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 38 H 0.26 17.19 5.48 -92.71 -0.51 16.69 16 Total: -1.00 -71.10 277.41 1.55 -69.54 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 1.31 Total: 23.75 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 4.67 Total: 9.32 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -6.44 Total: -112.49 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.05 Total: -38.26 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.05 Total: 48.14 kcal Total: -71.10 1.55 -69.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220406470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.241 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds