Wall clock time and date at job start Mon Mar 30 2020 03:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46661 * 2 1 4 4 C 1.45751 * 111.00440 * 43.47265 * 3 2 1 5 5 C 1.51678 * 113.94151 * 192.72919 * 4 3 2 6 6 H 1.09001 * 109.21987 * 53.54612 * 5 4 3 7 7 C 1.52999 * 109.22359 * 172.89492 * 5 4 3 8 8 C 1.53114 * 110.75537 * 293.22308 * 5 4 3 9 9 N 1.47251 * 108.39850 * 85.59008 * 8 5 4 10 10 C 1.46508 * 120.07462 * 110.04099 * 9 8 5 11 11 C 1.33612 * 119.84806 * 290.01103 * 9 8 5 12 12 O 1.21280 * 119.88165 * 179.49681 * 11 9 8 13 13 C 1.46877 * 110.99718 * 169.29310 * 3 2 1 14 14 H 1.09003 * 109.59955 * 268.96551 * 13 3 2 15 15 C 1.50698 * 109.60669 * 29.28373 * 13 3 2 16 16 H 1.08005 * 119.99762 * 5.22055 * 15 13 3 17 17 C 1.37878 * 120.00390 * 185.21967 * 15 13 3 18 18 N 1.31507 * 119.99675 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00024 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46886 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47191 * 119.99895 * 19 17 15 22 22 H 1.48504 * 109.47094 * 240.00087 * 19 17 15 23 23 H 1.09004 * 109.46750 * 170.62257 * 1 2 3 24 24 H 1.09000 * 109.47433 * 290.62426 * 1 2 3 25 25 H 1.09001 * 109.47413 * 50.62886 * 1 2 3 26 26 H 1.08997 * 109.47205 * 240.00010 * 2 1 3 27 27 H 1.08995 * 109.47241 * 119.99824 * 2 1 3 28 28 H 1.09011 * 108.58458 * 313.87710 * 4 3 2 29 29 H 1.08995 * 108.59061 * 71.71496 * 4 3 2 30 30 H 1.08998 * 109.47001 * 59.99433 * 7 5 4 31 31 H 1.08997 * 109.46952 * 179.97438 * 7 5 4 32 32 H 1.08993 * 109.47005 * 299.99785 * 7 5 4 33 33 H 1.08996 * 109.68127 * 205.31801 * 8 5 4 34 34 H 1.08997 * 109.67618 * 325.86795 * 8 5 4 35 35 H 1.09003 * 109.46740 * 90.00083 * 10 9 8 36 36 H 1.09001 * 109.46566 * 209.99411 * 10 9 8 37 37 H 1.08997 * 109.46658 * 329.99682 * 10 9 8 38 38 H 0.97008 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.2627 2.2067 0.9361 5 6 1.4972 3.6967 0.7764 6 1 1.3168 3.9791 -0.2609 7 6 0.5271 4.4592 1.6810 8 6 2.9345 4.0635 1.1559 9 7 3.7916 3.8673 -0.0252 10 6 4.3649 5.0247 -0.7168 11 6 4.0458 2.6313 -0.4645 12 8 4.7442 2.4694 -1.4427 13 6 3.4653 1.4323 0.2548 14 1 3.6450 1.5261 1.3258 15 6 4.1105 0.1703 -0.2574 16 1 3.5225 -0.5545 -0.8009 17 6 5.4513 -0.0589 -0.0322 18 7 6.1670 0.8235 0.6300 19 14 6.2511 -1.6229 -0.6677 20 1 5.2368 -2.4455 -1.3746 21 1 7.3466 -1.2722 -1.6068 22 1 6.8054 -2.3944 0.4737 23 1 -0.3633 -1.0140 -0.1675 24 1 -0.3634 0.3620 0.9618 25 1 -0.3634 0.6519 -0.7944 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.2006 2.0051 0.7954 29 1 1.5382 1.9205 1.9511 30 1 0.6959 4.1717 2.7188 31 1 0.6926 5.5308 1.5696 32 1 -0.4978 4.2183 1.3994 33 1 2.9763 5.1062 1.4706 34 1 3.2752 3.4206 1.9675 35 1 5.3343 5.2652 -0.2802 36 1 4.4905 4.7907 -1.7739 37 1 3.6964 5.8791 -0.6106 38 1 7.1103 0.6620 0.7888 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220406544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:26 Heat of formation + Delta-G solvation = -42.389088 kcal Electronic energy + Delta-G solvation = -18915.108389 eV Core-core repulsion = 16178.049002 eV Total energy + Delta-G solvation = -2737.059387 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12713 -38.51749 -37.04960 -34.64384 -34.19571 -31.80690 -29.29064 -28.40001 -26.78819 -26.17389 -24.55961 -22.31333 -20.87782 -20.00197 -18.24811 -18.02259 -17.11997 -16.69088 -16.12201 -16.02662 -15.70799 -14.96365 -14.67080 -14.40728 -14.16653 -14.06804 -13.46099 -13.28412 -13.21617 -12.86082 -12.83107 -12.66628 -12.47504 -12.40306 -12.28489 -12.10703 -11.86997 -11.65026 -11.38297 -10.91452 -10.67105 -10.28761 -9.37830 -8.90915 -8.22786 -6.29357 1.33785 1.38853 1.48634 2.21646 2.34848 2.47376 3.18420 3.34281 3.90951 3.94581 4.23202 4.27724 4.40890 4.52602 4.57741 4.61715 4.66090 4.68756 4.72613 4.77497 4.86919 4.92894 4.96626 5.07125 5.15302 5.21999 5.30967 5.37431 5.43510 5.50400 5.66983 5.84228 5.93413 6.23334 6.65203 6.74563 6.92331 7.41353 7.85549 8.89328 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.010902 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.476120 B = 2567.697939 C = 3465.280473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 N -0.551 5.551 4 C 0.052 3.948 5 C -0.103 4.103 6 H 0.068 0.932 7 C -0.130 4.130 8 C 0.117 3.883 9 N -0.634 5.634 10 C 0.090 3.910 11 C 0.536 3.464 12 O -0.585 6.585 13 C 0.217 3.783 14 H 0.001 0.999 15 C -0.526 4.526 16 H 0.073 0.927 17 C 0.021 3.979 18 N -0.915 5.915 19 Si 0.960 3.040 20 H -0.260 1.260 21 H -0.291 1.291 22 H -0.271 1.271 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.100 0.900 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 6.729 4.135 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.056 4.056 3 N -0.278 5.278 4 C -0.076 4.076 5 C -0.123 4.123 6 H 0.086 0.914 7 C -0.188 4.188 8 C -0.005 4.005 9 N -0.368 5.368 10 C -0.052 4.052 11 C 0.325 3.675 12 O -0.463 6.463 13 C 0.106 3.894 14 H 0.018 0.982 15 C -0.564 4.564 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.554 5.554 19 Si 0.785 3.215 20 H -0.184 1.184 21 H -0.218 1.218 22 H -0.197 1.197 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.118 0.882 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.108 6.868 3.233 14.290 hybrid contribution 1.480 -1.079 0.401 1.875 sum -10.628 5.789 3.633 12.635 Atomic orbital electron populations 1.21941 0.93150 1.02670 1.02258 1.21889 0.95382 0.88454 0.99848 1.60929 1.02794 1.11501 1.52564 1.21948 0.99550 0.93314 0.92752 1.21398 0.94889 0.94754 1.01291 0.91394 1.21701 0.98238 1.00056 0.98772 1.22011 0.89428 1.02839 0.86209 1.48133 1.51189 1.06081 1.31385 1.21565 0.98426 0.88358 0.96894 1.21547 0.78216 0.84593 0.83181 1.90427 1.40071 1.86209 1.29580 1.19231 0.85099 0.91910 0.93117 0.98164 1.21449 0.95158 1.03538 1.36261 0.90917 1.25749 0.97844 0.99799 0.94539 1.70029 1.07556 1.36499 1.41276 0.85477 0.78389 0.79413 0.78184 1.18420 1.21788 1.19682 0.90898 0.91489 0.91931 0.92629 0.96161 0.88178 0.96634 0.91960 0.90655 0.91095 0.86863 0.93424 0.94156 0.93566 0.87880 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.69 71.98 0.63 -3.27 16 2 C 0.07 2.80 4.82 86.30 0.42 3.21 16 3 N -0.55 -23.69 4.51 -884.24 -3.99 -27.68 16 4 C 0.05 1.70 3.80 86.09 0.33 2.03 16 5 C -0.10 -2.91 2.70 -11.19 -0.03 -2.94 16 6 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 7 C -0.13 -2.33 9.00 71.98 0.65 -1.68 16 8 C 0.12 3.80 5.37 86.27 0.46 4.26 16 9 N -0.63 -26.89 2.88 -845.36 -2.43 -29.33 16 10 C 0.09 3.19 10.39 127.77 1.33 4.52 16 11 C 0.54 29.07 6.35 88.06 0.56 29.63 16 12 O -0.59 -37.04 15.18 -3.03 -0.05 -37.08 16 13 C 0.22 11.50 1.71 43.65 0.07 11.58 16 14 H 0.00 0.06 6.66 -2.39 -0.02 0.04 16 15 C -0.53 -30.73 7.07 25.60 0.18 -30.55 16 16 H 0.07 4.15 5.29 -2.91 -0.02 4.14 16 17 C 0.02 1.26 4.97 84.66 0.42 1.68 16 18 N -0.92 -57.05 12.59 21.45 0.27 -56.78 16 19 Si 0.96 47.21 29.54 68.60 2.03 49.24 16 20 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.07 1.58 6.72 -2.39 -0.02 1.57 16 25 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 26 H 0.06 2.41 6.29 -2.39 -0.02 2.39 16 27 H 0.02 0.84 7.83 -2.39 -0.02 0.82 16 28 H 0.10 2.69 5.35 -2.38 -0.01 2.68 16 29 H 0.02 0.53 7.77 -2.39 -0.02 0.51 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 2.69 7.64 -2.39 -0.02 2.67 16 34 H 0.05 1.75 6.76 -2.39 -0.02 1.73 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.83 7.40 -2.39 -0.02 1.82 16 37 H 0.10 2.57 8.03 -2.39 -0.02 2.55 16 38 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -76.69 291.72 1.87 -74.81 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.03 Total: 8.35 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 5.01 Total: 18.46 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -6.15 Total: -113.78 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.05 Total: -37.08 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -76.69 1.87 -74.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220406544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.424 kcal (2) G-P(sol) polarization free energy of solvation -76.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds