Wall clock time and date at job start Mon Mar 30 2020 03:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47607 * 2 1 4 4 C 1.47244 * 120.07837 * 269.98056 * 3 2 1 5 5 C 1.53065 * 108.40998 * 250.03329 * 4 3 2 6 6 C 1.52997 * 109.22446 * 154.08420 * 5 4 3 7 7 C 1.52996 * 109.21492 * 34.73493 * 5 4 3 8 8 C 1.51692 * 110.75465 * 274.41375 * 5 4 3 9 9 N 1.45756 * 113.93695 * 66.76298 * 8 5 4 10 10 C 1.46879 * 112.43794 * 292.27950 * 9 8 5 11 11 H 1.08994 * 109.60201 * 325.86354 * 10 9 8 12 12 C 1.50696 * 109.60070 * 205.54468 * 10 9 8 13 13 H 1.08005 * 120.00120 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99955 * 180.02562 * 12 10 9 15 15 N 1.31512 * 120.00015 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00015 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46931 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47143 * 119.99727 * 16 14 12 19 19 H 1.48497 * 109.47114 * 240.00168 * 16 14 12 20 20 C 1.33607 * 120.07423 * 89.99603 * 3 2 1 21 21 O 1.21288 * 119.88556 * 0.50454 * 20 3 2 22 22 H 1.09004 * 109.46903 * 300.00206 * 1 2 3 23 23 H 1.09003 * 109.47193 * 59.99509 * 1 2 3 24 24 H 1.08995 * 109.47729 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47176 * 240.00228 * 2 1 3 26 26 H 1.09000 * 109.47450 * 120.00030 * 2 1 3 27 27 H 1.09006 * 109.67627 * 9.74198 * 4 3 2 28 28 H 1.09003 * 109.68160 * 130.24320 * 4 3 2 29 29 H 1.09003 * 109.46951 * 181.26979 * 6 5 4 30 30 H 1.08999 * 109.47222 * 301.26436 * 6 5 4 31 31 H 1.08999 * 109.47134 * 61.26949 * 6 5 4 32 32 H 1.08992 * 109.47736 * 298.74123 * 7 5 4 33 33 H 1.09008 * 109.46739 * 58.73845 * 7 5 4 34 34 H 1.09003 * 109.47328 * 178.73493 * 7 5 4 35 35 H 1.08996 * 108.59125 * 305.60988 * 8 5 4 36 36 H 1.09000 * 108.58668 * 187.91037 * 8 5 4 37 37 H 1.00906 * 111.00090 * 57.30020 * 9 8 5 38 38 H 0.96995 * 119.99809 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2649 2.0768 -1.2742 5 6 3.7757 2.2547 -1.4435 6 6 4.1074 2.3538 -2.9337 7 6 4.4952 1.0430 -0.8477 8 6 4.2509 3.5125 -0.7413 9 7 4.1342 3.4593 0.7106 10 6 2.7361 3.4434 1.1604 11 1 2.1278 4.0450 0.4851 12 6 2.6477 4.0048 2.5561 13 1 3.5415 4.3413 3.0605 14 6 1.4257 4.0890 3.1892 15 7 0.3373 3.6798 2.5748 16 14 1.3162 4.7843 4.9195 17 1 2.6725 5.1713 5.3842 18 1 0.4344 5.9791 4.9180 19 1 0.7546 3.7558 5.8316 20 6 2.2416 2.0124 1.1562 21 8 2.0478 1.4370 2.2061 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8708 1.4827 -2.0988 28 1 1.7789 3.0524 -1.2598 29 1 5.1851 2.4580 -3.0599 30 1 3.7676 1.4517 -3.4424 31 1 3.6060 3.2224 -3.3606 32 1 4.2710 0.9743 0.2167 33 1 4.1566 0.1365 -1.3495 34 1 5.5706 1.1548 -0.9861 35 1 3.6655 4.3564 -1.1063 36 1 5.2962 3.6810 -1.0000 37 1 4.6438 2.6734 1.0858 38 1 -0.5223 3.7387 3.0204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220406632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:42 Heat of formation + Delta-G solvation = -31.104944 kcal Electronic energy + Delta-G solvation = -19122.481684 eV Core-core repulsion = 16385.911614 eV Total energy + Delta-G solvation = -2736.570070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92733 -36.79107 -34.92766 -33.05024 -31.95845 -30.28408 -27.42472 -27.12064 -25.68475 -24.07077 -23.58748 -21.43751 -19.06155 -17.85582 -16.51274 -16.29491 -15.44375 -14.99721 -14.63776 -14.32147 -13.69683 -13.45658 -13.17317 -12.86800 -12.61597 -12.21344 -12.03987 -11.91543 -11.66846 -11.40764 -11.27325 -11.12901 -10.94328 -10.77856 -10.64828 -10.55958 -10.40093 -10.30518 -9.82079 -9.27693 -8.63842 -8.32287 -7.73535 -7.28005 -5.96307 -3.96473 3.39163 3.47399 3.51765 3.90020 4.15084 4.52871 4.97258 5.01459 5.12189 5.38148 5.50622 5.54310 5.62828 5.69826 5.77059 5.80836 5.87214 5.88740 5.99117 6.07691 6.11273 6.17739 6.25275 6.34058 6.40917 6.45126 6.58445 6.64548 6.77288 6.96941 7.46054 7.83843 8.06294 8.24570 8.32096 8.66101 9.07334 9.67597 9.75667 11.14712 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.010010 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.723865 B = 2796.471762 C = 3452.946816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.626 5.626 4 C 0.129 3.871 5 C -0.124 4.124 6 C -0.132 4.132 7 C -0.133 4.133 8 C 0.069 3.931 9 N -0.670 5.670 10 C 0.214 3.786 11 H 0.052 0.948 12 C -0.495 4.495 13 H 0.068 0.932 14 C 0.074 3.926 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.286 1.286 20 C 0.500 3.500 21 O -0.521 6.521 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.332 0.668 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 -4.656 -11.272 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.363 5.363 4 C 0.005 3.995 5 C -0.127 4.127 6 C -0.190 4.190 7 C -0.191 4.191 8 C -0.062 4.062 9 N -0.299 5.299 10 C 0.103 3.897 11 H 0.070 0.930 12 C -0.533 4.533 13 H 0.086 0.914 14 C -0.130 4.130 15 N -0.519 5.519 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.212 1.212 20 C 0.287 3.713 21 O -0.392 6.392 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.128 -4.292 -10.527 12.094 hybrid contribution -0.684 -0.735 0.463 1.106 sum 3.444 -5.028 -10.063 11.765 Atomic orbital electron populations 1.22101 0.96814 1.00624 1.02637 1.21175 0.93923 0.84490 1.01152 1.48303 1.68255 1.13159 1.06596 1.21634 0.93856 0.97803 0.86183 1.21583 0.96475 0.98346 0.96308 1.21763 1.01306 1.01383 0.94554 1.21797 0.98918 0.96791 1.01588 1.21668 1.00521 0.95027 0.89019 1.60284 1.14908 1.48375 1.06346 1.19588 0.83634 0.88011 0.98472 0.93017 1.20737 0.93705 1.40421 0.98436 0.91371 1.24880 0.95585 0.94559 0.97987 1.69892 0.98399 1.46079 1.37578 0.86383 0.77995 0.78094 0.84498 1.19645 1.21292 1.21175 1.22834 0.75852 0.90818 0.81751 1.90496 1.49779 1.67489 1.31469 0.91492 0.93375 0.93077 0.92515 0.90924 0.91180 0.91171 0.92629 0.93035 0.92567 0.92159 0.93297 0.93254 0.91623 0.91975 0.85012 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 37.15 0.38 -2.41 16 2 C 0.12 2.03 5.83 -4.04 -0.02 2.01 16 3 N -0.63 -12.34 1.36 -173.08 -0.23 -12.57 16 4 C 0.13 2.09 5.11 -3.60 -0.02 2.07 16 5 C -0.12 -1.76 0.74 -155.14 -0.11 -1.88 16 6 C -0.13 -1.44 8.26 37.16 0.31 -1.13 16 7 C -0.13 -1.92 7.16 37.16 0.27 -1.66 16 8 C 0.07 1.12 4.74 -5.11 -0.02 1.10 16 9 N -0.67 -13.94 6.25 -110.42 -0.69 -14.63 16 10 C 0.21 5.35 2.10 -69.69 -0.15 5.20 16 11 H 0.05 1.38 6.68 -51.93 -0.35 1.03 16 12 C -0.49 -14.12 8.36 -34.44 -0.29 -14.41 16 13 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 14 C 0.07 2.14 4.84 -17.82 -0.09 2.05 16 15 N -0.88 -26.32 12.09 55.43 0.67 -25.65 16 16 Si 0.90 22.69 29.54 -169.99 -5.02 17.67 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 C 0.50 12.33 4.76 -11.16 -0.05 12.28 16 21 O -0.52 -15.03 14.72 5.55 0.08 -14.95 16 22 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 26 H 0.07 1.40 7.40 -51.93 -0.38 1.02 16 27 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16 28 H 0.07 1.24 6.77 -51.93 -0.35 0.89 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.06 5.01 -51.93 -0.26 0.80 16 33 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 36 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.33 6.86 6.83 -39.29 -0.27 6.59 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -31.97 292.86 -6.76 -38.72 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.17 Total: 3.78 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 0.20 Total: 3.22 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.25 Total: -52.86 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.97 -6.76 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220406632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.619 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds