Wall clock time and date at job start Mon Mar 30 2020 03:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47607 * 2 1 4 4 C 1.47244 * 120.07837 * 269.98056 * 3 2 1 5 5 C 1.53065 * 108.40998 * 250.03329 * 4 3 2 6 6 C 1.52997 * 109.22446 * 154.08420 * 5 4 3 7 7 C 1.52996 * 109.21492 * 34.73493 * 5 4 3 8 8 C 1.51692 * 110.75465 * 274.41375 * 5 4 3 9 9 N 1.45756 * 113.93695 * 66.76298 * 8 5 4 10 10 C 1.46879 * 112.43794 * 292.27950 * 9 8 5 11 11 H 1.08994 * 109.60201 * 325.86354 * 10 9 8 12 12 C 1.50696 * 109.60070 * 205.54468 * 10 9 8 13 13 H 1.08005 * 120.00120 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99955 * 180.02562 * 12 10 9 15 15 N 1.31512 * 120.00015 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00015 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46931 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47143 * 119.99727 * 16 14 12 19 19 H 1.48497 * 109.47114 * 240.00168 * 16 14 12 20 20 C 1.33607 * 120.07423 * 89.99603 * 3 2 1 21 21 O 1.21288 * 119.88556 * 0.50454 * 20 3 2 22 22 H 1.09004 * 109.46903 * 300.00206 * 1 2 3 23 23 H 1.09003 * 109.47193 * 59.99509 * 1 2 3 24 24 H 1.08995 * 109.47729 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47176 * 240.00228 * 2 1 3 26 26 H 1.09000 * 109.47450 * 120.00030 * 2 1 3 27 27 H 1.09006 * 109.67627 * 9.74198 * 4 3 2 28 28 H 1.09003 * 109.68160 * 130.24320 * 4 3 2 29 29 H 1.09003 * 109.46951 * 181.26979 * 6 5 4 30 30 H 1.08999 * 109.47222 * 301.26436 * 6 5 4 31 31 H 1.08999 * 109.47134 * 61.26949 * 6 5 4 32 32 H 1.08992 * 109.47736 * 298.74123 * 7 5 4 33 33 H 1.09008 * 109.46739 * 58.73845 * 7 5 4 34 34 H 1.09003 * 109.47328 * 178.73493 * 7 5 4 35 35 H 1.08996 * 108.59125 * 305.60988 * 8 5 4 36 36 H 1.09000 * 108.58668 * 187.91037 * 8 5 4 37 37 H 1.00906 * 111.00090 * 57.30020 * 9 8 5 38 38 H 0.96995 * 119.99809 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2649 2.0768 -1.2742 5 6 3.7757 2.2547 -1.4435 6 6 4.1074 2.3538 -2.9337 7 6 4.4952 1.0430 -0.8477 8 6 4.2509 3.5125 -0.7413 9 7 4.1342 3.4593 0.7106 10 6 2.7361 3.4434 1.1604 11 1 2.1278 4.0450 0.4851 12 6 2.6477 4.0048 2.5561 13 1 3.5415 4.3413 3.0605 14 6 1.4257 4.0890 3.1892 15 7 0.3373 3.6798 2.5748 16 14 1.3162 4.7843 4.9195 17 1 2.6725 5.1713 5.3842 18 1 0.4344 5.9791 4.9180 19 1 0.7546 3.7558 5.8316 20 6 2.2416 2.0124 1.1562 21 8 2.0478 1.4370 2.2061 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8708 1.4827 -2.0988 28 1 1.7789 3.0524 -1.2598 29 1 5.1851 2.4580 -3.0599 30 1 3.7676 1.4517 -3.4424 31 1 3.6060 3.2224 -3.3606 32 1 4.2710 0.9743 0.2167 33 1 4.1566 0.1365 -1.3495 34 1 5.5706 1.1548 -0.9861 35 1 3.6655 4.3564 -1.1063 36 1 5.2962 3.6810 -1.0000 37 1 4.6438 2.6734 1.0858 38 1 -0.5223 3.7387 3.0204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220406632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:41 Heat of formation + Delta-G solvation = -53.592014 kcal Electronic energy + Delta-G solvation = -19123.456796 eV Core-core repulsion = 16385.911614 eV Total energy + Delta-G solvation = -2737.545182 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51389 -38.40637 -36.61130 -34.83380 -33.85518 -31.76615 -29.19933 -28.27899 -26.98063 -25.86007 -25.15712 -23.09496 -20.54493 -19.45158 -18.38770 -18.07112 -17.09285 -16.63242 -16.35666 -15.88188 -15.14033 -15.03095 -14.58616 -14.54030 -14.28886 -13.67192 -13.51098 -13.19913 -13.06264 -12.88472 -12.78326 -12.70927 -12.59497 -12.33433 -12.23234 -12.00529 -11.94509 -11.71126 -11.54378 -11.29086 -10.63367 -10.36896 -9.38352 -8.98243 -8.15347 -6.21756 1.36616 1.40549 1.51519 2.20663 2.38625 2.48972 3.23688 3.66117 3.82639 3.84680 3.99371 4.21098 4.37895 4.45964 4.48688 4.53719 4.55765 4.67032 4.78657 4.82181 4.88203 4.96883 5.02409 5.08916 5.14083 5.17605 5.28166 5.31133 5.38144 5.50101 5.69328 5.93900 6.03689 6.45435 6.59748 6.76976 6.97242 7.47392 7.88509 8.93802 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.010010 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.723865 B = 2796.471762 C = 3452.946816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.114 3.886 3 N -0.620 5.620 4 C 0.121 3.879 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.129 4.129 8 C 0.064 3.936 9 N -0.676 5.676 10 C 0.218 3.782 11 H 0.031 0.969 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.959 3.041 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.292 1.292 20 C 0.503 3.497 21 O -0.576 6.576 22 H 0.014 0.986 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.331 0.669 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -5.400 -13.713 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.009 4.009 3 N -0.354 5.354 4 C -0.002 4.002 5 C -0.118 4.118 6 C -0.182 4.182 7 C -0.186 4.186 8 C -0.066 4.066 9 N -0.306 5.306 10 C 0.107 3.893 11 H 0.048 0.952 12 C -0.553 4.553 13 H 0.075 0.925 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.785 3.215 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.219 1.219 20 C 0.290 3.710 21 O -0.453 6.453 22 H 0.033 0.967 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.149 0.851 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.065 -5.025 -13.043 14.867 hybrid contribution -0.920 -0.518 1.125 1.542 sum 4.146 -5.542 -11.919 13.782 Atomic orbital electron populations 1.22020 0.96453 1.02154 1.00670 1.21374 0.94149 0.83108 1.02262 1.48194 1.66663 1.14058 1.06524 1.21960 0.95635 0.97245 0.85311 1.21476 0.94659 0.96938 0.98718 1.21704 1.02463 1.02710 0.91274 1.21749 1.00159 0.97484 0.99226 1.21822 1.02152 0.96284 0.86354 1.60168 1.12338 1.48543 1.09560 1.19252 0.85648 0.88072 0.96377 0.95159 1.21086 0.93319 1.40585 1.00275 0.92509 1.25645 0.95437 0.95051 1.01566 1.70000 0.98572 1.47352 1.38836 0.85495 0.78354 0.77576 0.80066 1.18852 1.19831 1.21861 1.22504 0.75432 0.90623 0.82427 1.90456 1.52480 1.68610 1.33737 0.96657 0.91944 0.89853 0.87726 0.93305 0.87392 0.93174 0.91189 0.91143 0.91896 0.95935 0.91529 0.91483 0.92199 0.89408 0.85090 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 10.24 71.98 0.74 -4.39 16 2 C 0.11 3.81 5.83 86.38 0.50 4.32 16 3 N -0.62 -24.12 1.36 -820.55 -1.11 -25.23 16 4 C 0.12 3.65 5.11 86.26 0.44 4.09 16 5 C -0.11 -2.93 0.74 -52.59 -0.04 -2.97 16 6 C -0.12 -2.10 8.26 71.98 0.59 -1.51 16 7 C -0.13 -3.33 7.16 71.98 0.52 -2.81 16 8 C 0.06 1.98 4.74 86.09 0.41 2.39 16 9 N -0.68 -28.42 6.25 -503.26 -3.15 -31.57 16 10 C 0.22 11.28 2.10 43.65 0.09 11.37 16 11 H 0.03 1.69 6.68 -2.39 -0.02 1.68 16 12 C -0.51 -30.44 8.36 25.60 0.21 -30.23 16 13 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 14 C 0.02 1.41 4.84 84.66 0.41 1.82 16 15 N -0.91 -56.30 12.09 21.45 0.26 -56.04 16 16 Si 0.96 47.81 29.54 68.60 2.03 49.84 16 17 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 20 C 0.50 25.53 4.76 88.06 0.42 25.95 16 21 O -0.58 -34.81 14.72 -3.06 -0.04 -34.85 16 22 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.10 2.54 8.02 -2.39 -0.02 2.52 16 26 H 0.05 1.89 7.40 -2.39 -0.02 1.87 16 27 H 0.11 2.46 7.64 -2.38 -0.02 2.44 16 28 H 0.05 1.74 6.77 -2.39 -0.02 1.72 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.02 0.75 5.01 -2.39 -0.01 0.74 16 33 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.93 7.79 -2.39 -0.02 1.91 16 36 H 0.09 2.30 8.10 -2.39 -0.02 2.28 16 37 H 0.33 13.89 6.83 -89.69 -0.61 13.28 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -73.84 292.86 2.70 -71.14 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.42 Total: 18.68 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 4.30 Total: 8.03 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.00 Total: -112.84 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.04 Total: -34.85 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -73.84 2.70 -71.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220406632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.548 kcal (2) G-P(sol) polarization free energy of solvation -73.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds