Wall clock time and date at job start Mon Mar 30 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46943 * 2 1 4 4 C 1.47249 * 120.07613 * 270.02378 * 3 2 1 5 5 C 1.53118 * 108.40188 * 249.97323 * 4 3 2 6 6 C 1.52998 * 109.22081 * 34.73852 * 5 4 3 7 7 C 1.52994 * 109.22068 * 154.12956 * 5 4 3 8 8 C 1.51691 * 110.74956 * 274.41375 * 5 4 3 9 9 N 1.45753 * 113.93944 * 66.77287 * 8 5 4 10 10 C 1.46880 * 112.43332 * 292.27817 * 9 8 5 11 11 H 1.09005 * 109.73270 * 205.61760 * 10 9 8 12 12 C 1.50694 * 109.60263 * 326.02326 * 10 9 8 13 13 H 1.07998 * 120.00584 * 353.75006 * 12 10 9 14 14 C 1.37883 * 119.99882 * 173.75750 * 12 10 9 15 15 N 1.31516 * 119.99866 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00015 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46681 * 269.99846 * 16 14 12 18 18 H 1.48501 * 109.46968 * 29.99476 * 16 14 12 19 19 H 1.48493 * 109.47216 * 149.99517 * 16 14 12 20 20 C 1.33606 * 120.07255 * 90.00260 * 3 2 1 21 21 O 1.21287 * 119.88725 * 0.55861 * 20 3 2 22 22 H 1.09007 * 109.47313 * 60.00057 * 1 2 3 23 23 H 1.08994 * 109.47003 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47370 * 299.99444 * 1 2 3 25 25 H 1.09007 * 109.47168 * 240.00344 * 2 1 3 26 26 H 1.08996 * 109.47426 * 120.00417 * 2 1 3 27 27 H 1.08994 * 109.67794 * 9.69759 * 4 3 2 28 28 H 1.08994 * 109.67593 * 130.24838 * 4 3 2 29 29 H 1.09001 * 109.46799 * 60.00136 * 6 5 4 30 30 H 1.08998 * 109.47075 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.47244 * 300.00295 * 6 5 4 32 32 H 1.09001 * 109.47054 * 59.99770 * 7 5 4 33 33 H 1.08999 * 109.47357 * 179.97438 * 7 5 4 34 34 H 1.09006 * 109.46960 * 299.99614 * 7 5 4 35 35 H 1.09001 * 108.58637 * 187.92184 * 8 5 4 36 36 H 1.08990 * 108.58951 * 305.75753 * 8 5 4 37 37 H 1.00902 * 111.00225 * 167.26408 * 9 8 5 38 38 H 0.96999 * 119.99433 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2637 2.0772 -1.2742 5 6 3.7749 2.2566 -1.4437 6 6 4.4958 1.0456 -0.8482 7 6 4.1061 2.3573 -2.9340 8 6 4.2488 3.5149 -0.7416 9 7 4.1325 3.4615 0.7103 10 6 2.7345 3.4440 1.1604 11 1 2.6676 3.8508 2.1695 12 6 1.8917 4.2717 0.2247 13 1 2.3613 4.8443 -0.5614 14 6 0.5211 4.2980 0.3722 15 7 -0.0508 3.6004 1.3293 16 14 -0.5237 5.3235 -0.7882 17 1 -0.6863 6.6902 -0.2306 18 1 0.1427 5.4053 -2.1127 19 1 -1.8578 4.6902 -0.9435 20 6 2.2415 2.0125 1.1562 21 8 2.0488 1.4366 2.2061 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.8699 1.4830 -2.0987 28 1 1.7778 3.0527 -1.2592 29 1 4.1747 0.1413 -1.3652 30 1 5.5723 1.1693 -0.9663 31 1 4.2539 0.9636 0.2115 32 1 3.5858 3.2127 -3.3649 33 1 5.1813 2.4855 -3.0594 34 1 3.7873 1.4456 -3.4395 35 1 5.2940 3.6845 -1.0004 36 1 3.6608 4.3577 -1.1045 37 1 4.6419 4.2180 1.1420 38 1 -1.0151 3.6187 1.4328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220406701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:44 Heat of formation + Delta-G solvation = -22.711759 kcal Electronic energy + Delta-G solvation = -19607.817162 eV Core-core repulsion = 16871.611048 eV Total energy + Delta-G solvation = -2736.206114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65838 -36.54668 -34.68272 -33.36902 -32.07520 -29.97531 -27.14954 -26.55698 -25.58882 -24.47933 -23.26510 -21.36352 -18.55399 -17.52082 -17.08626 -15.84325 -15.10109 -14.67057 -14.45705 -14.27795 -13.76838 -13.31304 -13.00569 -12.71051 -12.52272 -12.05786 -11.87751 -11.61407 -11.46011 -11.18257 -11.10063 -11.01096 -10.98694 -10.68297 -10.43010 -10.22161 -10.15606 -9.96549 -9.72277 -9.64568 -8.71590 -8.31293 -7.33185 -7.21485 -6.17685 -4.26588 3.15564 3.23791 3.24951 4.20933 4.29407 4.41757 5.03732 5.29297 5.39963 5.47020 5.72545 5.87007 6.00451 6.04592 6.08397 6.14180 6.20281 6.29754 6.30286 6.34933 6.41618 6.50745 6.63489 6.75279 6.78877 6.85650 6.97457 7.07382 7.14671 7.24942 7.66647 7.76107 7.88585 8.08691 8.40792 8.69674 8.92908 9.30759 9.91210 10.82435 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.013866 C = 0.011599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.646446 B = 2018.798705 C = 2413.384528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 N -0.595 5.595 4 C 0.106 3.894 5 C -0.075 4.075 6 C -0.122 4.122 7 C -0.134 4.134 8 C 0.076 3.924 9 N -0.690 5.690 10 C 0.199 3.801 11 H 0.060 0.940 12 C -0.561 4.561 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.856 5.856 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.271 1.271 19 H -0.284 1.284 20 C 0.576 3.424 21 O -0.583 6.583 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.125 0.875 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.334 0.666 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.840 -2.459 -7.935 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.006 4.006 3 N -0.327 5.327 4 C -0.017 4.017 5 C -0.077 4.077 6 C -0.179 4.179 7 C -0.193 4.193 8 C -0.054 4.054 9 N -0.321 5.321 10 C 0.088 3.912 11 H 0.077 0.923 12 C -0.599 4.599 13 H 0.095 0.905 14 C -0.135 4.135 15 N -0.490 5.490 16 Si 0.712 3.288 17 H -0.204 1.204 18 H -0.195 1.195 19 H -0.210 1.210 20 C 0.366 3.634 21 O -0.462 6.462 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.142 0.858 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.152 0.848 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.593 -3.504 -7.247 9.268 hybrid contribution -1.109 1.421 -0.907 2.018 sum 3.484 -2.083 -8.153 9.108 Atomic orbital electron populations 1.22083 0.97010 1.00008 1.02792 1.21150 0.93803 0.84793 1.00840 1.47427 1.66376 1.12048 1.06855 1.22423 0.93966 1.01129 0.84183 1.20690 0.96863 0.96131 0.94010 1.21694 0.98075 0.95840 1.02315 1.21794 1.00748 1.01238 0.95491 1.21293 0.98161 0.96850 0.89048 1.59631 1.14643 1.50612 1.07219 1.19445 0.84183 0.89865 0.97698 0.92259 1.21450 0.91906 1.29645 1.16944 0.90544 1.25037 0.98064 0.95023 0.95375 1.69961 1.11032 1.38121 1.29889 0.86694 0.80139 0.80626 0.81325 1.20375 1.19525 1.20998 1.20726 0.73428 0.87778 0.81460 1.90469 1.55060 1.68380 1.32311 0.93480 0.93568 0.91420 0.92675 0.91235 0.93361 0.85767 0.94675 0.94332 0.91240 0.92791 0.93123 0.93069 0.93741 0.93417 0.84849 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 37.16 0.38 -2.69 16 2 C 0.12 2.31 5.84 -4.04 -0.02 2.29 16 3 N -0.60 -13.07 1.34 -173.05 -0.23 -13.30 16 4 C 0.11 2.08 5.04 -3.57 -0.02 2.06 16 5 C -0.08 -1.30 0.74 -155.11 -0.11 -1.41 16 6 C -0.12 -2.10 7.43 37.16 0.28 -1.83 16 7 C -0.13 -1.86 8.26 37.15 0.31 -1.56 16 8 C 0.08 1.37 4.56 -5.11 -0.02 1.35 16 9 N -0.69 -14.09 5.79 -110.42 -0.64 -14.73 16 10 C 0.20 4.90 3.13 -69.69 -0.22 4.68 16 11 H 0.06 1.64 8.13 -51.93 -0.42 1.21 16 12 C -0.56 -13.72 4.93 -34.44 -0.17 -13.89 16 13 H 0.08 1.80 5.21 -52.49 -0.27 1.53 16 14 C 0.07 1.84 4.80 -17.82 -0.09 1.75 16 15 N -0.86 -23.71 12.08 55.43 0.67 -23.04 16 16 Si 0.89 19.67 29.51 -169.99 -5.02 14.65 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.58 14.75 3.94 -11.16 -0.04 14.71 16 21 O -0.58 -17.04 16.63 5.55 0.09 -16.94 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 25 H 0.05 0.91 8.03 -51.92 -0.42 0.50 16 26 H 0.07 1.45 7.40 -51.93 -0.38 1.07 16 27 H 0.05 0.85 7.66 -51.93 -0.40 0.45 16 28 H 0.13 2.76 4.13 -51.93 -0.21 2.54 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.43 5.75 -51.93 -0.30 1.13 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.05 0.92 5.18 -51.93 -0.27 0.65 16 37 H 0.33 6.17 8.89 -39.29 -0.35 5.82 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -29.33 287.47 -6.49 -35.82 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.96 Total: 7.74 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 0.27 Total: 5.47 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.20 Total: -51.07 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.09 Total: -16.94 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.33 -6.49 -35.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220406701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.104 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds