Wall clock time and date at job start Mon Mar 30 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46943 * 2 1 4 4 C 1.47249 * 120.07613 * 270.02378 * 3 2 1 5 5 C 1.53118 * 108.40188 * 249.97323 * 4 3 2 6 6 C 1.52998 * 109.22081 * 34.73852 * 5 4 3 7 7 C 1.52994 * 109.22068 * 154.12956 * 5 4 3 8 8 C 1.51691 * 110.74956 * 274.41375 * 5 4 3 9 9 N 1.45753 * 113.93944 * 66.77287 * 8 5 4 10 10 C 1.46880 * 112.43332 * 292.27817 * 9 8 5 11 11 H 1.09005 * 109.73270 * 205.61760 * 10 9 8 12 12 C 1.50694 * 109.60263 * 326.02326 * 10 9 8 13 13 H 1.07998 * 120.00584 * 353.75006 * 12 10 9 14 14 C 1.37883 * 119.99882 * 173.75750 * 12 10 9 15 15 N 1.31516 * 119.99866 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00015 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46681 * 269.99846 * 16 14 12 18 18 H 1.48501 * 109.46968 * 29.99476 * 16 14 12 19 19 H 1.48493 * 109.47216 * 149.99517 * 16 14 12 20 20 C 1.33606 * 120.07255 * 90.00260 * 3 2 1 21 21 O 1.21287 * 119.88725 * 0.55861 * 20 3 2 22 22 H 1.09007 * 109.47313 * 60.00057 * 1 2 3 23 23 H 1.08994 * 109.47003 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47370 * 299.99444 * 1 2 3 25 25 H 1.09007 * 109.47168 * 240.00344 * 2 1 3 26 26 H 1.08996 * 109.47426 * 120.00417 * 2 1 3 27 27 H 1.08994 * 109.67794 * 9.69759 * 4 3 2 28 28 H 1.08994 * 109.67593 * 130.24838 * 4 3 2 29 29 H 1.09001 * 109.46799 * 60.00136 * 6 5 4 30 30 H 1.08998 * 109.47075 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.47244 * 300.00295 * 6 5 4 32 32 H 1.09001 * 109.47054 * 59.99770 * 7 5 4 33 33 H 1.08999 * 109.47357 * 179.97438 * 7 5 4 34 34 H 1.09006 * 109.46960 * 299.99614 * 7 5 4 35 35 H 1.09001 * 108.58637 * 187.92184 * 8 5 4 36 36 H 1.08990 * 108.58951 * 305.75753 * 8 5 4 37 37 H 1.00902 * 111.00225 * 167.26408 * 9 8 5 38 38 H 0.96999 * 119.99433 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2637 2.0772 -1.2742 5 6 3.7749 2.2566 -1.4437 6 6 4.4958 1.0456 -0.8482 7 6 4.1061 2.3573 -2.9340 8 6 4.2488 3.5149 -0.7416 9 7 4.1325 3.4615 0.7103 10 6 2.7345 3.4440 1.1604 11 1 2.6676 3.8508 2.1695 12 6 1.8917 4.2717 0.2247 13 1 2.3613 4.8443 -0.5614 14 6 0.5211 4.2980 0.3722 15 7 -0.0508 3.6004 1.3293 16 14 -0.5237 5.3235 -0.7882 17 1 -0.6863 6.6902 -0.2306 18 1 0.1427 5.4053 -2.1127 19 1 -1.8578 4.6902 -0.9435 20 6 2.2415 2.0125 1.1562 21 8 2.0488 1.4366 2.2061 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.8699 1.4830 -2.0987 28 1 1.7778 3.0527 -1.2592 29 1 4.1747 0.1413 -1.3652 30 1 5.5723 1.1693 -0.9663 31 1 4.2539 0.9636 0.2115 32 1 3.5858 3.2127 -3.3649 33 1 5.1813 2.4855 -3.0594 34 1 3.7873 1.4456 -3.4395 35 1 5.2940 3.6845 -1.0004 36 1 3.6608 4.3577 -1.1045 37 1 4.6419 4.2180 1.1420 38 1 -1.0151 3.6187 1.4328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220406701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:44 Heat of formation + Delta-G solvation = -42.731768 kcal Electronic energy + Delta-G solvation = -19608.685295 eV Core-core repulsion = 16871.611048 eV Total energy + Delta-G solvation = -2737.074247 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37588 -38.30621 -36.41901 -35.15697 -33.85119 -31.63304 -28.85833 -27.99683 -27.07550 -26.16911 -24.96508 -23.03269 -20.25482 -19.15108 -18.93308 -17.56800 -16.90671 -16.45062 -16.15129 -15.87562 -15.38155 -14.91627 -14.50527 -14.39561 -14.22155 -13.80158 -13.38514 -13.14232 -12.91061 -12.81753 -12.73466 -12.70604 -12.52048 -12.23732 -12.00841 -11.87467 -11.70706 -11.55321 -11.41239 -11.18878 -10.68036 -10.27612 -9.09527 -8.95157 -8.11830 -6.27501 1.39424 1.42291 1.50705 2.34173 2.44008 2.68261 3.11885 3.71564 4.02952 4.09848 4.19820 4.44491 4.52053 4.57406 4.68501 4.68783 4.81507 4.86374 4.94197 4.99143 5.00986 5.05871 5.16399 5.18175 5.26421 5.37128 5.47298 5.49235 5.61315 5.70787 5.73984 5.89559 6.20234 6.28078 6.78718 6.83048 7.07623 7.33498 7.97991 8.86119 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.013866 C = 0.011599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.646446 B = 2018.798705 C = 2413.384528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.113 3.887 3 N -0.590 5.590 4 C 0.098 3.902 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.127 4.127 8 C 0.073 3.927 9 N -0.690 5.690 10 C 0.200 3.800 11 H 0.013 0.987 12 C -0.548 4.548 13 H 0.091 0.909 14 C 0.026 3.974 15 N -0.899 5.899 16 Si 0.947 3.053 17 H -0.281 1.281 18 H -0.248 1.248 19 H -0.292 1.292 20 C 0.571 3.429 21 O -0.635 6.635 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.019 0.981 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.343 0.657 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 -2.628 -11.447 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 N -0.320 5.320 4 C -0.023 4.023 5 C -0.076 4.076 6 C -0.172 4.172 7 C -0.185 4.185 8 C -0.056 4.056 9 N -0.322 5.322 10 C 0.088 3.912 11 H 0.031 0.969 12 C -0.586 4.586 13 H 0.109 0.891 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.772 3.228 17 H -0.207 1.207 18 H -0.171 1.171 19 H -0.219 1.219 20 C 0.362 3.638 21 O -0.519 6.519 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.038 0.962 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.161 0.839 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.662 -3.659 -10.827 12.754 hybrid contribution -1.366 1.455 0.196 2.006 sum 4.296 -2.204 -10.631 11.676 Atomic orbital electron populations 1.21971 0.96638 1.01639 1.00553 1.21351 0.94055 0.83685 1.01892 1.47441 1.65010 1.12855 1.06706 1.22538 0.96022 1.00191 0.83584 1.20723 0.94780 0.95533 0.96562 1.21595 0.99165 0.96575 0.99859 1.21731 1.02118 1.02335 0.92286 1.21450 0.99873 0.97182 0.87075 1.59589 1.12074 1.51252 1.09237 1.19187 0.86763 0.89627 0.95655 0.96947 1.21642 0.91778 1.28729 1.16473 0.89135 1.25771 0.99382 0.95954 0.96578 1.70150 1.10720 1.40437 1.32223 0.85708 0.78158 0.78540 0.80360 1.20657 1.17116 1.21863 1.20817 0.73155 0.88026 0.81841 1.90422 1.57533 1.69570 1.34378 0.93008 0.90034 0.96156 0.88449 0.93170 0.90598 0.88124 0.93110 0.92677 0.95199 0.92341 0.91287 0.91474 0.90784 0.94278 0.83859 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 10.24 71.98 0.74 -4.90 16 2 C 0.11 4.32 5.84 86.38 0.50 4.83 16 3 N -0.59 -25.69 1.34 -820.44 -1.10 -26.79 16 4 C 0.10 3.63 5.04 86.28 0.43 4.07 16 5 C -0.07 -2.31 0.74 -52.57 -0.04 -2.35 16 6 C -0.11 -3.61 7.43 71.98 0.53 -3.07 16 7 C -0.13 -2.85 8.26 71.98 0.59 -2.26 16 8 C 0.07 2.46 4.56 86.09 0.39 2.85 16 9 N -0.69 -28.02 5.79 -503.26 -2.91 -30.93 16 10 C 0.20 10.12 3.13 43.65 0.14 10.26 16 11 H 0.01 0.74 8.13 -2.38 -0.02 0.72 16 12 C -0.55 -26.84 4.93 25.60 0.13 -26.71 16 13 H 0.09 4.13 5.21 -2.91 -0.02 4.11 16 14 C 0.03 1.34 4.80 84.66 0.41 1.74 16 15 N -0.90 -51.77 12.08 21.45 0.26 -51.51 16 16 Si 0.95 40.18 29.51 68.60 2.02 42.20 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 C 0.57 30.20 3.94 88.06 0.35 30.55 16 21 O -0.64 -39.24 16.63 -3.05 -0.05 -39.29 16 22 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 2.89 8.03 -2.38 -0.02 2.87 16 26 H 0.05 2.11 7.40 -2.39 -0.02 2.10 16 27 H 0.08 2.37 7.66 -2.39 -0.02 2.35 16 28 H 0.10 4.27 4.13 -2.39 -0.01 4.26 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.18 5.75 -2.39 -0.01 1.16 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.33 8.11 -2.38 -0.02 1.31 16 35 H 0.07 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.04 1.40 5.18 -2.39 -0.01 1.38 16 37 H 0.34 12.63 8.89 -89.69 -0.80 11.84 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -67.33 287.47 2.65 -64.68 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.25 Total: 26.63 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 4.17 Total: 15.01 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -3.75 Total: -109.23 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.05 Total: -39.29 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.02 Total: 42.20 kcal Total: -67.33 2.65 -64.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220406701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.948 kcal (2) G-P(sol) polarization free energy of solvation -67.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds