Wall clock time and date at job start Mon Mar 30 2020 03:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47227 * 2 1 4 4 C 1.47249 * 120.07969 * 89.99285 * 3 2 1 5 5 C 1.53107 * 108.40110 * 250.00979 * 4 3 2 6 6 C 1.51687 * 110.75957 * 274.40755 * 5 4 3 7 7 H 1.09003 * 108.58838 * 305.76987 * 6 5 4 8 8 C 1.52997 * 108.59330 * 187.92740 * 6 5 4 9 9 N 1.45757 * 113.93678 * 66.77288 * 6 5 4 10 10 C 1.46904 * 110.99993 * 57.30526 * 9 6 5 11 11 C 1.46927 * 112.43065 * 292.28350 * 9 6 5 12 12 H 1.09002 * 109.61109 * 326.03541 * 11 9 6 13 13 C 1.50707 * 109.74611 * 205.61865 * 11 9 6 14 14 H 1.07999 * 119.99505 * 0.74238 * 13 11 9 15 15 C 1.37879 * 119.99671 * 180.74633 * 13 11 9 16 16 N 1.31507 * 119.99912 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99738 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46952 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47432 * 119.99663 * 17 15 13 20 20 H 1.48505 * 109.46936 * 239.99717 * 17 15 13 21 21 C 1.33612 * 120.07561 * 270.02027 * 3 2 1 22 22 O 1.21286 * 119.88037 * 0.50117 * 21 3 2 23 23 H 1.08996 * 109.47520 * 300.00503 * 1 2 3 24 24 H 1.09003 * 109.46675 * 60.01021 * 1 2 3 25 25 H 1.09003 * 109.46794 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47520 * 239.99497 * 2 1 3 27 27 H 1.09004 * 109.47330 * 119.99648 * 2 1 3 28 28 H 1.09002 * 109.67606 * 130.28222 * 4 3 2 29 29 H 1.08997 * 109.70675 * 9.75931 * 4 3 2 30 30 H 1.08997 * 109.21991 * 154.08362 * 5 4 3 31 31 H 1.08997 * 109.22330 * 34.73306 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99943 * 8 6 5 33 33 H 1.09001 * 109.46832 * 300.00134 * 8 6 5 34 34 H 1.09004 * 109.47261 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.46879 * 59.99869 * 10 9 6 36 36 H 1.08999 * 109.47079 * 179.97438 * 10 9 6 37 37 H 1.09000 * 109.46952 * 300.00344 * 10 9 6 38 38 H 0.97001 * 119.99922 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2642 2.0771 1.2742 5 6 1.2010 3.1657 1.4433 6 6 1.6225 4.4426 0.7413 7 1 2.6096 4.7291 1.1043 8 6 0.6305 5.5493 1.1044 9 7 1.6798 4.3279 -0.7106 10 6 0.3833 3.9050 -1.2569 11 6 2.7572 3.4359 -1.1605 12 1 3.6074 3.5187 -0.4835 13 6 3.1830 3.8152 -2.5556 14 1 2.7100 4.6464 -3.0573 15 6 4.1763 3.1008 -3.1912 16 7 4.7525 2.0890 -2.5800 17 14 4.7047 3.5713 -4.9201 18 1 3.9081 4.7367 -5.3811 19 1 6.1465 3.9265 -4.9177 20 1 4.4788 2.4244 -5.8360 21 6 2.2411 2.0126 -1.1562 22 8 2.0297 1.4433 -2.2061 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2551 2.5309 1.2593 29 1 2.1978 1.3678 2.0991 30 1 1.0617 3.3693 2.5050 31 1 0.2596 2.8170 1.0189 32 1 0.6341 5.7007 2.1839 33 1 -0.3698 5.2609 0.7813 34 1 0.9201 6.4747 0.6064 35 1 -0.3785 4.6389 -0.9940 36 1 0.4539 3.8278 -2.3418 37 1 0.1125 2.9349 -0.8400 38 1 5.4516 1.5866 -3.0271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220407723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:48 Heat of formation + Delta-G solvation = -20.569314 kcal Electronic energy + Delta-G solvation = -19254.791133 eV Core-core repulsion = 16518.677922 eV Total energy + Delta-G solvation = -2736.113211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84977 -36.69019 -35.11539 -32.62621 -31.51072 -30.81367 -27.97496 -27.30326 -25.13832 -23.67941 -23.07476 -21.61929 -19.19961 -18.02336 -16.58700 -15.95218 -15.44450 -15.14683 -14.69627 -14.17680 -13.84823 -13.30643 -13.01881 -12.88978 -12.60856 -12.31494 -11.99150 -11.89814 -11.54213 -11.48494 -11.27760 -10.97080 -10.93548 -10.70117 -10.63827 -10.54293 -10.31944 -10.21549 -9.76240 -9.26444 -8.55154 -8.30110 -7.73335 -7.20116 -5.96697 -3.96631 3.38933 3.47162 3.51302 3.92310 4.13452 4.51701 4.99696 5.10859 5.30118 5.35336 5.47817 5.56766 5.67107 5.74925 5.82658 5.88225 5.93873 5.96905 6.02780 6.08942 6.17681 6.26886 6.31031 6.33281 6.52671 6.53626 6.60849 6.73573 6.76719 7.06834 7.45875 7.87153 7.99646 8.07521 8.33540 8.66925 9.07047 9.67468 9.77805 11.14672 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.011007 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.685203 B = 2543.259957 C = 3210.156416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.632 5.632 4 C 0.118 3.882 5 C -0.170 4.170 6 C 0.076 3.924 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.516 5.516 10 C 0.026 3.974 11 C 0.212 3.788 12 H 0.052 0.948 13 C -0.492 4.492 14 H 0.068 0.932 15 C 0.074 3.926 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.509 3.491 22 O -0.521 6.521 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 0.486 10.073 12.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.369 5.369 4 C -0.006 4.006 5 C -0.210 4.210 6 C -0.034 4.034 7 H 0.093 0.907 8 C -0.198 4.198 9 N -0.240 5.240 10 C -0.122 4.122 11 C 0.103 3.897 12 H 0.069 0.931 13 C -0.531 4.531 14 H 0.086 0.914 15 C -0.130 4.130 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.212 1.212 21 C 0.296 3.704 22 O -0.392 6.392 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.690 0.503 9.238 11.417 hybrid contribution 0.164 -0.899 -0.392 0.995 sum -6.527 -0.397 8.846 11.000 Atomic orbital electron populations 1.22130 0.97248 1.00941 1.01710 1.21186 0.93299 0.84704 1.01847 1.48384 1.68637 1.13171 1.06736 1.21596 0.98538 0.94297 0.86135 1.22503 1.00115 0.97555 1.00838 1.21319 0.99477 0.93447 0.89134 0.90732 1.21883 0.98961 0.99148 0.99852 1.61868 1.04713 1.51343 1.06043 1.22360 0.91069 0.97307 1.01469 1.19766 0.88922 0.82432 0.98623 0.93084 1.20702 1.18962 1.15043 0.98348 0.91357 1.24869 0.95830 0.94269 0.97989 1.69888 1.25274 1.19210 1.37659 0.86385 0.77849 0.78292 0.84472 1.19636 1.21249 1.21172 1.22572 0.75112 0.90904 0.81763 1.90488 1.49727 1.67539 1.31463 0.93331 0.92450 0.92725 0.90524 0.92289 0.91103 0.91184 0.91317 0.91346 0.93187 0.93179 0.91929 0.92925 0.90860 0.96025 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.11 2.02 6.12 -4.04 -0.02 1.99 16 3 N -0.63 -12.82 2.34 -173.06 -0.40 -13.23 16 4 C 0.12 1.94 5.95 -3.58 -0.02 1.92 16 5 C -0.17 -2.52 4.69 -27.34 -0.13 -2.64 16 6 C 0.08 1.26 2.22 -69.00 -0.15 1.11 16 7 H 0.07 1.26 7.77 -51.93 -0.40 0.85 16 8 C -0.14 -1.93 8.79 37.16 0.33 -1.61 16 9 N -0.52 -10.84 4.47 -230.96 -1.03 -11.88 16 10 C 0.03 0.53 7.97 60.07 0.48 1.01 16 11 C 0.21 5.33 1.84 -69.66 -0.13 5.21 16 12 H 0.05 1.36 6.66 -51.93 -0.35 1.01 16 13 C -0.49 -13.99 7.87 -34.44 -0.27 -14.27 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.07 2.15 4.82 -17.82 -0.09 2.06 16 16 N -0.88 -26.44 12.02 55.43 0.67 -25.77 16 17 Si 0.90 22.63 29.54 -169.99 -5.02 17.61 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 21 C 0.51 12.71 3.82 -11.16 -0.04 12.67 16 22 O -0.52 -15.11 14.67 5.55 0.08 -15.03 16 23 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.58 7.41 -51.93 -0.38 1.19 16 27 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 28 H 0.07 1.24 6.76 -51.93 -0.35 0.89 16 29 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.07 1.08 6.28 -51.93 -0.33 0.76 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.67 6.60 -51.93 -0.34 0.33 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.90 6.39 -51.93 -0.33 0.57 16 36 H 0.07 1.67 7.73 -51.93 -0.40 1.27 16 37 H 0.02 0.44 5.16 -51.93 -0.27 0.17 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 290.05 15.07 4.37 4.37 Total: -1.00 -32.38 290.05 -7.06 -39.43 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.05 Total: -0.84 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 0.33 Total: 5.33 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.77 Total: -50.88 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.38 -7.06 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220407723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.862 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds