Wall clock time and date at job start Mon Mar 30 2020 03:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47227 * 2 1 4 4 C 1.47249 * 120.07969 * 89.99285 * 3 2 1 5 5 C 1.53107 * 108.40110 * 250.00979 * 4 3 2 6 6 C 1.51687 * 110.75957 * 274.40755 * 5 4 3 7 7 H 1.09003 * 108.58838 * 305.76987 * 6 5 4 8 8 C 1.52997 * 108.59330 * 187.92740 * 6 5 4 9 9 N 1.45757 * 113.93678 * 66.77288 * 6 5 4 10 10 C 1.46904 * 110.99993 * 57.30526 * 9 6 5 11 11 C 1.46927 * 112.43065 * 292.28350 * 9 6 5 12 12 H 1.09002 * 109.61109 * 326.03541 * 11 9 6 13 13 C 1.50707 * 109.74611 * 205.61865 * 11 9 6 14 14 H 1.07999 * 119.99505 * 0.74238 * 13 11 9 15 15 C 1.37879 * 119.99671 * 180.74633 * 13 11 9 16 16 N 1.31507 * 119.99912 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99738 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46952 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47432 * 119.99663 * 17 15 13 20 20 H 1.48505 * 109.46936 * 239.99717 * 17 15 13 21 21 C 1.33612 * 120.07561 * 270.02027 * 3 2 1 22 22 O 1.21286 * 119.88037 * 0.50117 * 21 3 2 23 23 H 1.08996 * 109.47520 * 300.00503 * 1 2 3 24 24 H 1.09003 * 109.46675 * 60.01021 * 1 2 3 25 25 H 1.09003 * 109.46794 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47520 * 239.99497 * 2 1 3 27 27 H 1.09004 * 109.47330 * 119.99648 * 2 1 3 28 28 H 1.09002 * 109.67606 * 130.28222 * 4 3 2 29 29 H 1.08997 * 109.70675 * 9.75931 * 4 3 2 30 30 H 1.08997 * 109.21991 * 154.08362 * 5 4 3 31 31 H 1.08997 * 109.22330 * 34.73306 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99943 * 8 6 5 33 33 H 1.09001 * 109.46832 * 300.00134 * 8 6 5 34 34 H 1.09004 * 109.47261 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.46879 * 59.99869 * 10 9 6 36 36 H 1.08999 * 109.47079 * 179.97438 * 10 9 6 37 37 H 1.09000 * 109.46952 * 300.00344 * 10 9 6 38 38 H 0.97001 * 119.99922 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2642 2.0771 1.2742 5 6 1.2010 3.1657 1.4433 6 6 1.6225 4.4426 0.7413 7 1 2.6096 4.7291 1.1043 8 6 0.6305 5.5493 1.1044 9 7 1.6798 4.3279 -0.7106 10 6 0.3833 3.9050 -1.2569 11 6 2.7572 3.4359 -1.1605 12 1 3.6074 3.5187 -0.4835 13 6 3.1830 3.8152 -2.5556 14 1 2.7100 4.6464 -3.0573 15 6 4.1763 3.1008 -3.1912 16 7 4.7525 2.0890 -2.5800 17 14 4.7047 3.5713 -4.9201 18 1 3.9081 4.7367 -5.3811 19 1 6.1465 3.9265 -4.9177 20 1 4.4788 2.4244 -5.8360 21 6 2.2411 2.0126 -1.1562 22 8 2.0297 1.4433 -2.2061 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2551 2.5309 1.2593 29 1 2.1978 1.3678 2.0991 30 1 1.0617 3.3693 2.5050 31 1 0.2596 2.8170 1.0189 32 1 0.6341 5.7007 2.1839 33 1 -0.3698 5.2609 0.7813 34 1 0.9201 6.4747 0.6064 35 1 -0.3785 4.6389 -0.9940 36 1 0.4539 3.8278 -2.3418 37 1 0.1125 2.9349 -0.8400 38 1 5.4516 1.5866 -3.0271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220407723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:48 Heat of formation + Delta-G solvation = -43.807793 kcal Electronic energy + Delta-G solvation = -19255.798829 eV Core-core repulsion = 16518.677922 eV Total energy + Delta-G solvation = -2737.120907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51727 -38.34376 -36.80727 -34.68075 -33.07275 -32.29235 -29.42336 -29.04796 -26.91108 -25.35353 -24.45790 -23.24777 -20.62205 -19.78967 -18.42755 -17.78708 -17.12025 -16.94292 -16.29050 -16.02849 -15.22011 -14.83490 -14.49914 -14.40681 -14.29146 -13.91360 -13.48916 -13.27432 -13.12649 -12.96391 -12.83094 -12.74160 -12.70228 -12.36465 -12.24885 -12.02240 -11.90629 -11.64735 -11.46349 -11.25693 -10.62043 -10.30644 -9.38728 -8.90335 -8.15558 -6.21359 1.36283 1.40274 1.51073 2.23416 2.37352 2.48151 3.24012 3.40610 3.84949 3.96869 4.08543 4.29649 4.35049 4.41144 4.46933 4.49363 4.58486 4.69100 4.73647 4.79239 4.82647 4.93779 4.99504 5.04111 5.07326 5.12167 5.20071 5.27706 5.42481 5.48833 5.70400 5.93782 6.05128 6.30496 6.58546 6.78398 6.97510 7.47293 7.89997 8.94119 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.011007 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.685203 B = 2543.259957 C = 3210.156416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.108 3.892 3 N -0.631 5.631 4 C 0.109 3.891 5 C -0.159 4.159 6 C 0.066 3.934 7 H 0.069 0.931 8 C -0.132 4.132 9 N -0.527 5.527 10 C 0.038 3.962 11 C 0.214 3.786 12 H 0.031 0.969 13 C -0.508 4.508 14 H 0.055 0.945 15 C 0.024 3.976 16 N -0.912 5.912 17 Si 0.958 3.042 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.292 1.292 21 C 0.511 3.489 22 O -0.576 6.576 23 H 0.071 0.929 24 H 0.023 0.977 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.019 0.981 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 0.825 12.584 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 N -0.366 5.366 4 C -0.013 4.013 5 C -0.198 4.198 6 C -0.043 4.043 7 H 0.087 0.913 8 C -0.189 4.189 9 N -0.251 5.251 10 C -0.111 4.111 11 C 0.104 3.896 12 H 0.049 0.951 13 C -0.546 4.546 14 H 0.073 0.927 15 C -0.176 4.176 16 N -0.551 5.551 17 Si 0.784 3.216 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.219 1.219 21 C 0.298 3.702 22 O -0.452 6.452 23 H 0.090 0.910 24 H 0.043 0.957 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.037 0.963 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.970 0.864 11.820 14.282 hybrid contribution 0.539 -0.991 -1.067 1.553 sum -7.431 -0.127 10.752 13.071 Atomic orbital electron populations 1.22006 0.94985 1.02583 1.01140 1.21387 0.95136 0.83115 1.01835 1.48364 1.67229 1.14144 1.06889 1.21941 0.98434 0.95696 0.85266 1.22409 0.98743 0.95492 1.03202 1.21533 1.00551 0.95881 0.86329 0.91286 1.21816 0.97901 0.97246 1.01939 1.61780 1.03887 1.50093 1.09381 1.22236 0.91543 0.98257 0.99017 1.19461 0.89749 0.83817 0.96582 0.95117 1.21012 1.18873 1.14592 1.00143 0.92661 1.25622 0.96137 0.94336 1.01523 1.69992 1.25884 1.20234 1.38941 0.85511 0.78200 0.77802 0.80090 1.18882 1.19706 1.21901 1.22297 0.74726 0.90740 0.82393 1.90449 1.52473 1.68549 1.33739 0.90988 0.95729 0.90038 0.94351 0.88413 0.92785 0.86981 0.86810 0.91811 0.89835 0.92655 0.92856 0.89531 0.94700 0.96299 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 10.24 71.98 0.74 -3.53 16 2 C 0.11 3.72 6.12 86.38 0.53 4.24 16 3 N -0.63 -25.18 2.34 -820.47 -1.92 -27.10 16 4 C 0.11 3.28 5.95 86.27 0.51 3.79 16 5 C -0.16 -4.11 4.69 30.20 0.14 -3.97 16 6 C 0.07 2.05 2.22 44.70 0.10 2.15 16 7 H 0.07 2.22 7.77 -2.39 -0.02 2.21 16 8 C -0.13 -3.14 8.79 71.98 0.63 -2.50 16 9 N -0.53 -22.17 4.47 -884.61 -3.95 -26.12 16 10 C 0.04 1.51 7.97 127.69 1.02 2.53 16 11 C 0.21 11.10 1.84 43.64 0.08 11.18 16 12 H 0.03 1.71 6.66 -2.39 -0.02 1.69 16 13 C -0.51 -30.01 7.87 25.60 0.20 -29.81 16 14 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 15 C 0.02 1.44 4.82 84.66 0.41 1.85 16 16 N -0.91 -56.58 12.02 21.45 0.26 -56.32 16 17 Si 0.96 47.79 29.54 68.60 2.03 49.82 16 18 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 21 C 0.51 26.19 3.82 88.06 0.34 26.52 16 22 O -0.58 -34.99 14.67 -3.05 -0.04 -35.04 16 23 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.61 7.41 -2.39 -0.02 1.59 16 27 H 0.10 2.59 7.88 -2.39 -0.02 2.58 16 28 H 0.05 1.83 6.76 -2.39 -0.02 1.82 16 29 H 0.11 2.46 7.79 -2.39 -0.02 2.44 16 30 H 0.11 2.01 8.10 -2.39 -0.02 1.99 16 31 H 0.06 1.77 6.28 -2.39 -0.02 1.76 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.27 6.60 -2.39 -0.02 1.25 16 34 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.09 2.82 6.39 -2.39 -0.02 2.81 16 36 H 0.03 1.64 7.73 -2.39 -0.02 1.62 16 37 H 0.02 0.76 5.16 -2.39 -0.01 0.75 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.06 290.05 2.10 -72.96 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.03 Total: 9.34 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 4.70 Total: 12.46 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -5.61 Total: -109.54 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.04 Total: -35.04 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -75.06 2.10 -72.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220407723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.151 kcal (2) G-P(sol) polarization free energy of solvation -75.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds