Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.46932 * 2 1 4 4 C 1.45764 * 111.00141 * 295.82390 * 3 2 1 5 5 C 1.51677 * 113.93616 * 167.26629 * 4 3 2 6 6 C 1.53108 * 110.75711 * 66.77009 * 5 4 3 7 7 H 1.09000 * 109.68264 * 34.13609 * 6 5 4 8 8 C 1.52999 * 109.68107 * 154.68232 * 6 5 4 9 9 N 1.47252 * 108.40275 * 274.41137 * 6 5 4 10 10 C 1.46499 * 120.07298 * 249.97173 * 9 6 5 11 11 C 1.33605 * 119.85083 * 69.99207 * 9 6 5 12 12 O 1.21274 * 119.88363 * 180.53989 * 11 9 6 13 13 C 1.46880 * 110.99888 * 170.00143 * 3 2 1 14 14 H 1.08994 * 109.60018 * 330.71758 * 13 3 2 15 15 C 1.50703 * 109.60025 * 91.04306 * 13 3 2 16 16 H 1.07991 * 120.00188 * 24.42109 * 15 13 3 17 17 C 1.37880 * 119.99408 * 204.42561 * 15 13 3 18 18 N 1.31517 * 119.99767 * 185.01909 * 17 15 13 19 19 Si 1.86800 * 120.00089 * 5.01688 * 17 15 13 20 20 H 1.48502 * 109.46771 * 94.97101 * 19 17 15 21 21 H 1.48501 * 109.46871 * 214.96696 * 19 17 15 22 22 H 1.48492 * 109.47189 * 334.96655 * 19 17 15 23 23 H 1.09001 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47230 * 300.00052 * 1 2 3 25 25 H 1.09001 * 109.47318 * 60.00084 * 1 2 3 26 26 H 1.08997 * 109.47480 * 240.00402 * 2 1 3 27 27 H 1.09001 * 109.47318 * 119.99916 * 2 1 3 28 28 H 1.09000 * 108.58813 * 288.41945 * 4 3 2 29 29 H 1.08995 * 108.58419 * 46.11135 * 4 3 2 30 30 H 1.09001 * 109.22304 * 306.43592 * 5 4 3 31 31 H 1.09005 * 109.18438 * 187.07634 * 5 4 3 32 32 H 1.08993 * 109.47545 * 178.94741 * 8 6 5 33 33 H 1.09008 * 109.46868 * 298.94518 * 8 6 5 34 34 H 1.09007 * 109.47297 * 58.94005 * 8 6 5 35 35 H 1.09002 * 109.47227 * 180.02562 * 10 9 6 36 36 H 1.09002 * 109.47053 * 300.01833 * 10 9 6 37 37 H 1.08999 * 109.47461 * 60.01777 * 10 9 6 38 38 H 0.96999 * 119.99727 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6348 2.0751 -1.2249 5 6 1.8328 3.5780 -1.1727 6 6 3.3215 3.9267 -1.0917 7 1 3.9003 3.1998 -1.6615 8 6 3.5538 5.3290 -1.6577 9 7 3.7316 3.8884 0.3221 10 6 4.0646 5.1305 1.0238 11 6 3.7998 2.7182 0.9632 12 8 4.1280 2.6869 2.1303 13 6 3.4682 1.4312 0.2381 14 1 3.7659 0.5781 0.8477 15 6 4.1986 1.3907 -1.0795 16 1 3.7063 1.7258 -1.9803 17 6 5.4955 0.9257 -1.1347 18 7 6.1667 0.9820 -2.2643 19 14 6.2991 0.2158 0.3949 20 1 6.1443 -1.2611 0.3952 21 1 7.7431 0.5622 0.4015 22 1 5.6487 0.7819 1.6039 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2254 1.6752 -2.0492 29 1 0.5830 1.8698 -1.4235 30 1 1.3226 3.9770 -0.2960 31 1 1.4075 4.0268 -2.0705 32 1 4.6114 5.5811 -1.5813 33 1 3.2492 5.3535 -2.7041 34 1 2.9661 6.0515 -1.0912 35 1 4.3431 4.9031 2.0528 36 1 4.8992 5.6193 0.5211 37 1 3.1994 5.7935 1.0195 38 1 7.0792 0.6552 -2.3030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220408291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = -9.274732 kcal Electronic energy + Delta-G solvation = -19229.569178 eV Core-core repulsion = 16493.945737 eV Total energy + Delta-G solvation = -2735.623441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76369 -36.87378 -35.56752 -32.89697 -31.64810 -30.58983 -28.76550 -27.38615 -25.68619 -23.11725 -22.87222 -21.21153 -19.48762 -18.14380 -17.55176 -15.67481 -15.40497 -15.11457 -14.78417 -14.26561 -13.90949 -13.44310 -13.07015 -12.99426 -12.39063 -12.25754 -12.09554 -11.91844 -11.76070 -11.59290 -11.35025 -11.20049 -10.99152 -10.80532 -10.75356 -10.41630 -10.29115 -9.87752 -9.75775 -9.31511 -8.96964 -8.50261 -7.61301 -7.19821 -6.33656 -4.37804 3.21800 3.33059 3.53040 3.77446 4.02366 4.29958 4.85866 4.99452 5.40739 5.51445 5.62032 5.72118 5.77788 5.87314 5.89934 5.97086 6.02792 6.14839 6.17367 6.21298 6.30192 6.33019 6.42244 6.53805 6.55580 6.61339 6.66481 6.69466 6.77027 7.18116 7.25875 7.54544 7.81701 8.04059 8.18414 8.46103 8.61351 9.25793 9.39388 10.73175 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.014615 C = 0.010934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.197627 B = 1915.408178 C = 2560.276624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 N -0.534 5.534 4 C 0.050 3.950 5 C -0.120 4.120 6 C 0.106 3.894 7 H 0.148 0.852 8 C -0.153 4.153 9 N -0.595 5.595 10 C 0.081 3.919 11 C 0.537 3.463 12 O -0.586 6.586 13 C 0.169 3.831 14 H 0.068 0.932 15 C -0.562 4.562 16 H 0.106 0.894 17 C 0.090 3.910 18 N -0.878 5.878 19 Si 0.844 3.156 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.235 1.235 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 4.133 -0.040 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 N -0.260 5.260 4 C -0.077 4.077 5 C -0.159 4.159 6 C 0.004 3.996 7 H 0.164 0.836 8 C -0.210 4.210 9 N -0.328 5.328 10 C -0.063 4.063 11 C 0.326 3.674 12 O -0.466 6.466 13 C 0.059 3.941 14 H 0.086 0.914 15 C -0.599 4.599 16 H 0.124 0.876 17 C -0.117 4.117 18 N -0.513 5.513 19 Si 0.669 3.331 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.158 1.158 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.572 4.337 0.854 8.768 hybrid contribution 1.034 -0.643 -0.014 1.217 sum -6.538 3.694 0.840 7.557 Atomic orbital electron populations 1.21848 0.96115 1.00590 1.01875 1.21892 0.94384 0.89677 1.00848 1.61292 1.14103 1.14330 1.36245 1.21566 0.99158 0.93860 0.93158 1.21733 0.96811 0.96203 1.01156 1.22355 0.95860 0.98896 0.82513 0.83555 1.22054 1.01618 0.96727 1.00630 1.47582 1.67349 1.05810 1.12030 1.21479 0.99053 0.87099 0.98627 1.21447 0.74467 0.85963 0.85496 1.90525 1.50992 1.87392 1.17695 1.19966 0.85963 0.91619 0.96564 0.91392 1.21488 0.99169 1.45483 0.93715 0.87644 1.24973 0.96834 0.93998 0.95893 1.69877 1.11203 1.44342 1.25853 0.87239 0.79654 0.80249 0.85935 1.19862 1.20951 1.15809 0.93057 0.92504 0.92836 0.94290 0.91649 0.92311 0.92601 0.92304 0.91624 0.92460 0.91865 0.93271 0.90540 0.93283 0.93545 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.82 37.16 0.36 -1.74 16 2 C 0.06 1.08 5.60 -3.82 -0.02 1.06 16 3 N -0.53 -10.93 4.34 -230.83 -1.00 -11.94 16 4 C 0.05 0.92 4.72 -5.11 -0.02 0.90 16 5 C -0.12 -2.04 5.32 -27.35 -0.15 -2.19 16 6 C 0.11 2.00 2.82 -67.46 -0.19 1.81 16 7 H 0.15 3.29 3.95 -51.93 -0.20 3.08 16 8 C -0.15 -2.31 8.06 37.16 0.30 -2.01 16 9 N -0.60 -12.58 2.88 -173.34 -0.50 -13.08 16 10 C 0.08 1.44 9.38 59.85 0.56 2.00 16 11 C 0.54 13.18 6.09 -11.16 -0.07 13.12 16 12 O -0.59 -15.93 15.56 5.56 0.09 -15.84 16 13 C 0.17 4.02 1.72 -69.68 -0.12 3.90 16 14 H 0.07 1.72 5.16 -51.93 -0.27 1.45 16 15 C -0.56 -14.09 5.95 -34.44 -0.21 -14.30 16 16 H 0.11 2.70 3.97 -52.49 -0.21 2.49 16 17 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 18 N -0.88 -24.54 13.96 55.43 0.77 -23.76 16 19 Si 0.84 21.07 26.96 -169.99 -4.58 16.49 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.24 -6.17 5.50 56.52 0.31 -5.86 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.73 6.23 -51.93 -0.32 0.41 16 26 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.06 1.18 7.79 -51.93 -0.40 0.78 16 28 H 0.06 1.19 5.36 -51.93 -0.28 0.91 16 29 H 0.06 0.90 5.78 -51.93 -0.30 0.60 16 30 H 0.06 1.03 8.05 -51.93 -0.42 0.62 16 31 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 32 H 0.06 0.89 7.48 -51.93 -0.39 0.50 16 33 H 0.06 0.85 8.13 -51.92 -0.42 0.43 16 34 H 0.05 0.67 7.24 -51.93 -0.38 0.29 16 35 H 0.08 1.47 6.88 -51.93 -0.36 1.11 16 36 H 0.05 0.80 7.25 -51.93 -0.38 0.42 16 37 H 0.05 0.71 7.57 -51.93 -0.39 0.32 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 279.82 15.07 4.22 4.22 Total: -1.00 -29.91 279.82 -6.27 -36.18 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.62 Total: 2.88 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 0.35 Total: 4.85 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.73 Total: -48.78 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.58 Total: 16.49 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.91 -6.27 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220408291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.905 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds