Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.46932 * 2 1 4 4 C 1.45764 * 111.00141 * 295.82390 * 3 2 1 5 5 C 1.51677 * 113.93616 * 167.26629 * 4 3 2 6 6 C 1.53108 * 110.75711 * 66.77009 * 5 4 3 7 7 H 1.09000 * 109.68264 * 34.13609 * 6 5 4 8 8 C 1.52999 * 109.68107 * 154.68232 * 6 5 4 9 9 N 1.47252 * 108.40275 * 274.41137 * 6 5 4 10 10 C 1.46499 * 120.07298 * 249.97173 * 9 6 5 11 11 C 1.33605 * 119.85083 * 69.99207 * 9 6 5 12 12 O 1.21274 * 119.88363 * 180.53989 * 11 9 6 13 13 C 1.46880 * 110.99888 * 170.00143 * 3 2 1 14 14 H 1.08994 * 109.60018 * 330.71758 * 13 3 2 15 15 C 1.50703 * 109.60025 * 91.04306 * 13 3 2 16 16 H 1.07991 * 120.00188 * 24.42109 * 15 13 3 17 17 C 1.37880 * 119.99408 * 204.42561 * 15 13 3 18 18 N 1.31517 * 119.99767 * 185.01909 * 17 15 13 19 19 Si 1.86800 * 120.00089 * 5.01688 * 17 15 13 20 20 H 1.48502 * 109.46771 * 94.97101 * 19 17 15 21 21 H 1.48501 * 109.46871 * 214.96696 * 19 17 15 22 22 H 1.48492 * 109.47189 * 334.96655 * 19 17 15 23 23 H 1.09001 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47230 * 300.00052 * 1 2 3 25 25 H 1.09001 * 109.47318 * 60.00084 * 1 2 3 26 26 H 1.08997 * 109.47480 * 240.00402 * 2 1 3 27 27 H 1.09001 * 109.47318 * 119.99916 * 2 1 3 28 28 H 1.09000 * 108.58813 * 288.41945 * 4 3 2 29 29 H 1.08995 * 108.58419 * 46.11135 * 4 3 2 30 30 H 1.09001 * 109.22304 * 306.43592 * 5 4 3 31 31 H 1.09005 * 109.18438 * 187.07634 * 5 4 3 32 32 H 1.08993 * 109.47545 * 178.94741 * 8 6 5 33 33 H 1.09008 * 109.46868 * 298.94518 * 8 6 5 34 34 H 1.09007 * 109.47297 * 58.94005 * 8 6 5 35 35 H 1.09002 * 109.47227 * 180.02562 * 10 9 6 36 36 H 1.09002 * 109.47053 * 300.01833 * 10 9 6 37 37 H 1.08999 * 109.47461 * 60.01777 * 10 9 6 38 38 H 0.96999 * 119.99727 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6348 2.0751 -1.2249 5 6 1.8328 3.5780 -1.1727 6 6 3.3215 3.9267 -1.0917 7 1 3.9003 3.1998 -1.6615 8 6 3.5538 5.3290 -1.6577 9 7 3.7316 3.8884 0.3221 10 6 4.0646 5.1305 1.0238 11 6 3.7998 2.7182 0.9632 12 8 4.1280 2.6869 2.1303 13 6 3.4682 1.4312 0.2381 14 1 3.7659 0.5781 0.8477 15 6 4.1986 1.3907 -1.0795 16 1 3.7063 1.7258 -1.9803 17 6 5.4955 0.9257 -1.1347 18 7 6.1667 0.9820 -2.2643 19 14 6.2991 0.2158 0.3949 20 1 6.1443 -1.2611 0.3952 21 1 7.7431 0.5622 0.4015 22 1 5.6487 0.7819 1.6039 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2254 1.6752 -2.0492 29 1 0.5830 1.8698 -1.4235 30 1 1.3226 3.9770 -0.2960 31 1 1.4075 4.0268 -2.0705 32 1 4.6114 5.5811 -1.5813 33 1 3.2492 5.3535 -2.7041 34 1 2.9661 6.0515 -1.0912 35 1 4.3431 4.9031 2.0528 36 1 4.8992 5.6193 0.5211 37 1 3.1994 5.7935 1.0195 38 1 7.0792 0.6552 -2.3030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220408291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = -30.582001 kcal Electronic energy + Delta-G solvation = -19230.493130 eV Core-core repulsion = 16493.945737 eV Total energy + Delta-G solvation = -2736.547393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.47812 -38.59405 -37.18821 -34.86498 -33.15840 -32.23434 -30.25841 -28.84344 -27.41928 -24.80645 -24.34009 -22.72287 -21.14396 -19.87152 -19.36739 -17.29470 -17.15267 -16.98884 -16.39829 -15.84868 -15.52602 -15.07565 -14.79440 -14.53647 -14.24149 -13.70187 -13.55629 -13.53277 -13.10298 -13.05959 -12.93929 -12.75983 -12.62570 -12.35319 -12.25008 -12.12929 -11.80995 -11.62485 -11.30506 -11.18923 -10.82770 -10.47258 -9.27767 -8.87847 -8.41257 -6.42827 1.18755 1.27153 1.48600 1.91970 2.24614 2.41416 2.93350 3.30309 4.04491 4.11858 4.19677 4.23841 4.46222 4.48043 4.59732 4.62280 4.66034 4.74550 4.78696 4.86483 4.91252 4.95938 4.98848 5.08952 5.17111 5.19316 5.24210 5.30827 5.35054 5.48467 5.66352 5.92664 6.04020 6.26786 6.47457 6.60576 6.73861 7.20912 7.54603 8.67357 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.014615 C = 0.010934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.197627 B = 1915.408178 C = 2560.276624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.049 3.951 5 C -0.114 4.114 6 C 0.099 3.901 7 H 0.109 0.891 8 C -0.144 4.144 9 N -0.595 5.595 10 C 0.077 3.923 11 C 0.524 3.476 12 O -0.623 6.623 13 C 0.170 3.830 14 H 0.045 0.955 15 C -0.536 4.536 16 H 0.102 0.898 17 C 0.051 3.949 18 N -0.911 5.911 19 Si 0.883 3.117 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.257 1.257 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 5.426 -0.649 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 N -0.264 5.264 4 C -0.079 4.079 5 C -0.152 4.152 6 C -0.002 4.002 7 H 0.127 0.873 8 C -0.202 4.202 9 N -0.325 5.325 10 C -0.065 4.065 11 C 0.314 3.686 12 O -0.507 6.507 13 C 0.059 3.941 14 H 0.063 0.937 15 C -0.574 4.574 16 H 0.120 0.880 17 C -0.152 4.152 18 N -0.548 5.548 19 Si 0.709 3.291 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.181 1.181 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.597 5.642 0.216 11.134 hybrid contribution 1.581 -1.000 0.166 1.878 sum -8.016 4.642 0.382 9.270 Atomic orbital electron populations 1.21755 0.92696 1.02367 1.02346 1.22034 0.97142 0.88294 0.99902 1.61366 1.11562 1.15905 1.37566 1.21685 1.00379 0.94637 0.91169 1.21722 0.95337 0.95267 1.02900 1.22345 0.96590 1.00545 0.80732 0.87348 1.21994 1.01745 0.94440 1.01979 1.47759 1.65907 1.05888 1.12980 1.21679 1.01226 0.86197 0.97410 1.21513 0.74604 0.87246 0.85270 1.90493 1.52893 1.88109 1.19232 1.19806 0.88142 0.90941 0.95199 0.93669 1.21638 0.98470 1.42996 0.94265 0.88030 1.25395 0.97732 0.95145 0.96892 1.69930 1.11575 1.46537 1.26791 0.86648 0.78601 0.80314 0.83541 1.18802 1.21282 1.18086 0.90741 0.92438 0.91774 0.95426 0.92550 0.94489 0.89665 0.92223 0.88013 0.93151 0.89789 0.90915 0.92422 0.91513 0.90128 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.82 71.98 0.71 -2.79 16 2 C 0.05 1.90 5.60 86.30 0.48 2.39 16 3 N -0.54 -21.60 4.34 -884.21 -3.84 -25.43 16 4 C 0.05 1.68 4.72 86.08 0.41 2.09 16 5 C -0.11 -3.51 5.32 30.20 0.16 -3.34 16 6 C 0.10 3.55 2.82 44.88 0.13 3.68 16 7 H 0.11 4.81 3.95 -2.39 -0.01 4.80 16 8 C -0.14 -3.85 8.06 71.98 0.58 -3.27 16 9 N -0.59 -24.43 2.88 -821.37 -2.36 -26.79 16 10 C 0.08 2.60 9.38 127.77 1.20 3.80 16 11 C 0.52 25.89 6.09 88.06 0.54 26.42 16 12 O -0.62 -34.57 15.56 -3.01 -0.05 -34.61 16 13 C 0.17 8.18 1.72 43.65 0.08 8.26 16 14 H 0.05 2.36 5.16 -2.39 -0.01 2.35 16 15 C -0.54 -27.24 5.95 25.60 0.15 -27.09 16 16 H 0.10 5.24 3.97 -2.92 -0.01 5.23 16 17 C 0.05 2.79 5.47 84.65 0.46 3.25 16 18 N -0.91 -51.76 13.96 21.45 0.30 -51.46 16 19 Si 0.88 44.65 26.96 68.60 1.85 46.50 16 20 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.26 -13.87 5.50 99.48 0.55 -13.33 16 23 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.53 6.23 -2.39 -0.01 1.51 16 26 H 0.03 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.06 2.05 7.79 -2.39 -0.02 2.03 16 28 H 0.04 1.46 5.36 -2.39 -0.01 1.44 16 29 H 0.09 2.45 5.78 -2.39 -0.01 2.43 16 30 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 31 H 0.10 2.42 7.89 -2.38 -0.02 2.41 16 32 H 0.05 1.42 7.48 -2.39 -0.02 1.40 16 33 H 0.08 1.92 8.13 -2.38 -0.02 1.90 16 34 H 0.07 1.62 7.24 -2.38 -0.02 1.60 16 35 H 0.06 2.17 6.88 -2.39 -0.02 2.16 16 36 H 0.07 2.01 7.25 -2.39 -0.02 2.00 16 37 H 0.08 2.18 7.57 -2.39 -0.02 2.16 16 38 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -65.95 279.82 1.69 -64.26 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.89 Total: 14.15 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 4.89 Total: 13.40 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.90 Total: -103.69 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.05 Total: -34.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.85 Total: 46.50 kcal Total: -65.95 1.69 -64.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220408291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.678 kcal (2) G-P(sol) polarization free energy of solvation -65.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds