Wall clock time and date at job start Mon Mar 30 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47094 * 2 1 4 4 C 1.46500 * 119.99875 * 85.03890 * 3 2 1 5 5 C 1.50701 * 109.47510 * 89.99512 * 4 3 2 6 6 H 1.07996 * 119.99469 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00040 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00061 * 359.72837 * 7 5 4 9 9 Si 1.86793 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47151 * 90.00616 * 9 7 5 11 11 H 1.48504 * 109.47189 * 210.00366 * 9 7 5 12 12 H 1.48501 * 109.47607 * 330.00174 * 9 7 5 13 13 C 1.34778 * 119.99996 * 265.03052 * 3 2 1 14 14 O 1.21285 * 119.99541 * 184.39000 * 13 3 2 15 15 C 1.50696 * 120.00292 * 4.39789 * 13 3 2 16 16 H 1.09004 * 109.90418 * 331.01483 * 15 13 3 17 17 N 1.47902 * 109.91792 * 209.70242 * 15 13 3 18 18 C 1.48524 * 105.82074 * 215.31376 * 17 15 13 19 19 C 1.54940 * 103.22623 * 39.20995 * 18 17 15 20 20 C 1.53993 * 109.91592 * 92.11054 * 15 13 3 21 21 H 1.08998 * 110.31142 * 239.58904 * 20 15 13 22 22 C 1.52994 * 110.31152 * 1.66706 * 20 15 13 23 23 H 1.08991 * 109.46733 * 298.26067 * 1 2 3 24 24 H 1.08997 * 109.46953 * 58.25786 * 1 2 3 25 25 H 1.08995 * 109.47248 * 178.25589 * 1 2 3 26 26 H 1.09005 * 109.46461 * 240.00272 * 2 1 3 27 27 H 1.08995 * 109.47125 * 120.00397 * 2 1 3 28 28 H 1.09003 * 109.46929 * 329.99623 * 4 3 2 29 29 H 1.08999 * 109.47025 * 209.99859 * 4 3 2 30 30 H 0.97000 * 119.99545 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99920 * 335.83549 * 17 15 13 32 32 H 1.09000 * 110.67210 * 280.77855 * 18 17 15 33 33 H 1.09004 * 110.81238 * 157.71123 * 18 17 15 34 34 H 1.09005 * 110.72462 * 204.23116 * 19 18 17 35 35 H 1.08999 * 110.87750 * 81.01696 * 19 18 17 36 36 H 1.09000 * 109.47524 * 53.15649 * 22 20 15 37 37 H 1.09002 * 109.47712 * 173.15718 * 22 20 15 38 38 H 1.09005 * 109.46972 * 293.15877 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1591 2.1083 1.2640 5 6 3.5418 1.8858 1.8204 6 1 4.2455 1.2652 1.2857 7 6 3.9087 2.4754 3.0115 8 7 3.0538 3.2364 3.6594 9 14 5.6224 2.1990 3.7015 10 1 6.5386 3.2481 3.1865 11 1 5.5759 2.2668 5.1843 12 1 6.1152 0.8623 3.2824 13 6 2.3383 1.9828 -1.1628 14 8 2.8174 3.0971 -1.1573 15 6 2.1007 1.2713 -2.4698 16 1 2.1705 0.1933 -2.3235 17 7 3.0945 1.7132 -3.4721 18 6 2.3783 1.7282 -4.7731 19 6 0.9788 2.2793 -4.4011 20 6 0.7100 1.6368 -3.0208 21 1 0.0994 0.7408 -3.1315 22 6 0.0183 2.6388 -2.0945 23 1 -0.3632 0.4866 0.9051 24 1 -0.3633 0.5406 -0.8739 25 1 -0.3633 -1.0271 -0.0313 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.4181 1.7455 1.9763 29 1 2.0046 3.1732 1.0897 30 1 3.3119 3.6509 4.4976 31 1 3.4533 2.6288 -3.2461 32 1 2.2990 0.7202 -5.1803 33 1 2.8764 2.3899 -5.4818 34 1 0.2323 1.9585 -5.1277 35 1 0.9975 3.3663 -4.3236 36 1 0.6758 3.4916 -1.9257 37 1 -0.9085 2.9803 -2.5556 38 1 -0.2054 2.1585 -1.1419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226937855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:12 Heat of formation + Delta-G solvation = -34.821516 kcal Electronic energy + Delta-G solvation = -18471.664976 eV Core-core repulsion = 15734.933743 eV Total energy + Delta-G solvation = -2736.731232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19365 -37.33352 -35.31821 -32.81537 -31.84154 -30.10604 -29.52871 -27.16362 -25.52443 -23.15704 -22.95197 -21.50791 -20.40418 -17.92536 -16.98341 -16.36866 -16.06574 -15.60826 -14.79581 -14.35538 -13.90005 -13.68969 -13.48504 -13.10117 -12.82547 -12.61085 -12.35109 -12.04483 -11.91528 -11.48360 -11.23467 -11.11981 -10.99570 -10.95011 -10.83040 -10.62658 -10.52031 -10.40903 -10.10445 -9.60034 -8.86191 -8.46856 -8.40933 -7.64735 -6.02254 -4.06346 3.33390 3.33891 3.39588 3.43707 3.90126 4.41773 4.48853 4.65880 4.77666 5.00182 5.18074 5.30022 5.32561 5.43464 5.48490 5.53760 5.63453 5.69522 5.74303 5.81747 5.91631 6.04002 6.07574 6.10232 6.21019 6.27667 6.45670 6.60942 6.80898 7.09621 7.43796 7.50791 7.57838 7.94503 8.26110 8.43151 8.92116 9.09175 9.58688 11.05874 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.007092 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.449806 B = 3947.431377 C = 4293.897373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.514 3.486 14 O -0.543 6.543 15 C 0.050 3.950 16 H 0.100 0.900 17 N -0.660 5.660 18 C 0.043 3.957 19 C -0.152 4.152 20 C -0.103 4.103 21 H 0.080 0.920 22 C -0.167 4.167 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.263 0.737 31 H 0.353 0.647 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.974 -6.140 -13.095 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.300 3.700 14 O -0.421 6.421 15 C -0.064 4.064 16 H 0.118 0.882 17 N -0.292 5.292 18 C -0.087 4.087 19 C -0.191 4.191 20 C -0.124 4.124 21 H 0.098 0.902 22 C -0.224 4.224 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.173 0.827 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.357 -6.066 -12.954 15.653 hybrid contribution 0.256 0.565 0.638 0.890 sum -6.101 -5.500 -12.316 14.804 Atomic orbital electron populations 1.22407 0.96891 1.01557 1.02804 1.21486 0.93600 0.84290 1.02697 1.48212 1.62892 1.13227 1.07997 1.19248 0.96810 0.92790 0.78299 1.21446 0.98592 1.30401 1.05804 0.92413 1.24931 0.97493 0.94942 0.96773 1.69937 1.35044 1.32063 1.16536 0.86499 0.84457 0.78656 0.77822 1.20566 1.21196 1.19907 1.20143 0.78135 0.86560 0.85164 1.90646 1.44471 1.20144 1.86821 1.22648 0.91114 1.01016 0.91620 0.88198 1.62841 1.30948 1.34351 1.01016 1.23103 0.91998 1.01078 0.92531 1.23207 0.98677 1.00969 0.96287 1.22243 0.95892 0.99177 0.95072 0.90202 1.22243 1.00465 0.99937 0.99758 0.92031 0.92043 0.92222 0.91320 0.90102 0.95053 0.94108 0.92786 0.82676 0.90383 0.90759 0.91008 0.91137 0.91200 0.92831 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.71 37.16 0.36 -2.04 16 2 C 0.10 1.68 5.99 -4.04 -0.02 1.66 16 3 N -0.59 -12.45 2.17 -175.06 -0.38 -12.83 16 4 C 0.25 6.47 5.15 -5.19 -0.03 6.44 16 5 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.66 4.70 -10.99 -0.05 10.60 16 14 O -0.54 -13.49 14.46 5.55 0.08 -13.41 16 15 C 0.05 0.79 3.29 -67.80 -0.22 0.56 16 16 H 0.10 1.48 5.73 -51.93 -0.30 1.18 16 17 N -0.66 -10.34 7.39 -104.34 -0.77 -11.11 16 18 C 0.04 0.50 7.55 -1.90 -0.01 0.49 16 19 C -0.15 -1.74 6.61 -24.87 -0.16 -1.91 16 20 C -0.10 -1.36 2.95 -89.26 -0.26 -1.62 16 21 H 0.08 0.90 7.99 -51.93 -0.41 0.48 16 22 C -0.17 -2.46 7.68 37.15 0.29 -2.17 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.79 4.67 -51.93 -0.24 0.54 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.96 5.65 -51.93 -0.29 0.67 16 27 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.35 6.19 7.44 -39.29 -0.29 5.90 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.86 7.86 -51.93 -0.41 0.46 16 36 H 0.07 1.25 6.56 -51.93 -0.34 0.91 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.12 4.73 -51.93 -0.25 0.87 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -32.05 295.91 -7.28 -39.33 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.85 Total: 4.17 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.54 Total: -1.71 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.41 Total: -50.05 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.05 -7.28 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226937855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.511 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds