Wall clock time and date at job start Mon Mar 30 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47094 * 2 1 4 4 C 1.46500 * 119.99875 * 85.03890 * 3 2 1 5 5 C 1.50701 * 109.47510 * 89.99512 * 4 3 2 6 6 H 1.07996 * 119.99469 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00040 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00061 * 359.72837 * 7 5 4 9 9 Si 1.86793 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47151 * 90.00616 * 9 7 5 11 11 H 1.48504 * 109.47189 * 210.00366 * 9 7 5 12 12 H 1.48501 * 109.47607 * 330.00174 * 9 7 5 13 13 C 1.34778 * 119.99996 * 265.03052 * 3 2 1 14 14 O 1.21285 * 119.99541 * 184.39000 * 13 3 2 15 15 C 1.50696 * 120.00292 * 4.39789 * 13 3 2 16 16 H 1.09004 * 109.90418 * 331.01483 * 15 13 3 17 17 N 1.47902 * 109.91792 * 209.70242 * 15 13 3 18 18 C 1.48524 * 105.82074 * 215.31376 * 17 15 13 19 19 C 1.54940 * 103.22623 * 39.20995 * 18 17 15 20 20 C 1.53993 * 109.91592 * 92.11054 * 15 13 3 21 21 H 1.08998 * 110.31142 * 239.58904 * 20 15 13 22 22 C 1.52994 * 110.31152 * 1.66706 * 20 15 13 23 23 H 1.08991 * 109.46733 * 298.26067 * 1 2 3 24 24 H 1.08997 * 109.46953 * 58.25786 * 1 2 3 25 25 H 1.08995 * 109.47248 * 178.25589 * 1 2 3 26 26 H 1.09005 * 109.46461 * 240.00272 * 2 1 3 27 27 H 1.08995 * 109.47125 * 120.00397 * 2 1 3 28 28 H 1.09003 * 109.46929 * 329.99623 * 4 3 2 29 29 H 1.08999 * 109.47025 * 209.99859 * 4 3 2 30 30 H 0.97000 * 119.99545 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99920 * 335.83549 * 17 15 13 32 32 H 1.09000 * 110.67210 * 280.77855 * 18 17 15 33 33 H 1.09004 * 110.81238 * 157.71123 * 18 17 15 34 34 H 1.09005 * 110.72462 * 204.23116 * 19 18 17 35 35 H 1.08999 * 110.87750 * 81.01696 * 19 18 17 36 36 H 1.09000 * 109.47524 * 53.15649 * 22 20 15 37 37 H 1.09002 * 109.47712 * 173.15718 * 22 20 15 38 38 H 1.09005 * 109.46972 * 293.15877 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1591 2.1083 1.2640 5 6 3.5418 1.8858 1.8204 6 1 4.2455 1.2652 1.2857 7 6 3.9087 2.4754 3.0115 8 7 3.0538 3.2364 3.6594 9 14 5.6224 2.1990 3.7015 10 1 6.5386 3.2481 3.1865 11 1 5.5759 2.2668 5.1843 12 1 6.1152 0.8623 3.2824 13 6 2.3383 1.9828 -1.1628 14 8 2.8174 3.0971 -1.1573 15 6 2.1007 1.2713 -2.4698 16 1 2.1705 0.1933 -2.3235 17 7 3.0945 1.7132 -3.4721 18 6 2.3783 1.7282 -4.7731 19 6 0.9788 2.2793 -4.4011 20 6 0.7100 1.6368 -3.0208 21 1 0.0994 0.7408 -3.1315 22 6 0.0183 2.6388 -2.0945 23 1 -0.3632 0.4866 0.9051 24 1 -0.3633 0.5406 -0.8739 25 1 -0.3633 -1.0271 -0.0313 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.4181 1.7455 1.9763 29 1 2.0046 3.1732 1.0897 30 1 3.3119 3.6509 4.4976 31 1 3.4533 2.6288 -3.2461 32 1 2.2990 0.7202 -5.1803 33 1 2.8764 2.3899 -5.4818 34 1 0.2323 1.9585 -5.1277 35 1 0.9975 3.3663 -4.3236 36 1 0.6758 3.4916 -1.9257 37 1 -0.9085 2.9803 -2.5556 38 1 -0.2054 2.1585 -1.1419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226937855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:12 Heat of formation + Delta-G solvation = -57.944373 kcal Electronic energy + Delta-G solvation = -18472.667658 eV Core-core repulsion = 15734.933743 eV Total energy + Delta-G solvation = -2737.733915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61338 -38.68753 -36.98883 -34.93253 -33.01562 -31.64219 -30.75376 -28.95169 -26.87153 -25.02790 -24.28690 -22.61382 -21.72422 -19.38531 -18.69155 -18.22518 -17.53453 -16.94995 -16.56472 -15.85958 -15.43588 -14.98070 -14.69787 -14.38646 -14.33151 -13.97896 -13.74198 -13.55921 -13.36886 -13.22126 -12.97716 -12.67004 -12.54690 -12.22712 -12.16357 -12.08292 -11.87410 -11.73438 -11.65524 -11.56240 -10.66472 -10.49230 -9.63605 -9.43647 -8.24016 -6.38553 1.34447 1.37743 1.47449 1.78557 2.27688 2.42045 3.05253 3.28803 3.50983 3.69551 3.77382 4.10133 4.12278 4.34472 4.42857 4.43894 4.51185 4.62664 4.72120 4.76186 4.91477 4.93340 4.97074 5.02090 5.06192 5.08655 5.13315 5.23207 5.34623 5.47152 5.56955 5.75871 5.85660 6.05770 6.22602 6.68584 6.79565 7.26655 7.46323 8.82888 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.007092 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.449806 B = 3947.431377 C = 4293.897373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.096 3.904 3 N -0.598 5.598 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.281 1.281 11 H -0.272 1.272 12 H -0.263 1.263 13 C 0.507 3.493 14 O -0.596 6.596 15 C 0.058 3.942 16 H 0.119 0.881 17 N -0.676 5.676 18 C 0.043 3.957 19 C -0.146 4.146 20 C -0.098 4.098 21 H 0.116 0.884 22 C -0.163 4.163 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.022 0.978 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.338 0.662 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 -8.425 -14.865 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.328 5.328 4 C 0.145 3.855 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.207 1.207 11 H -0.197 1.197 12 H -0.187 1.187 13 C 0.296 3.704 14 O -0.478 6.478 15 C -0.055 4.055 16 H 0.137 0.863 17 N -0.306 5.306 18 C -0.086 4.086 19 C -0.185 4.185 20 C -0.119 4.119 21 H 0.134 0.866 22 C -0.220 4.220 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.848 -8.405 -14.748 18.304 hybrid contribution 0.371 1.302 1.168 1.788 sum -6.477 -7.102 -13.580 16.638 Atomic orbital electron populations 1.22330 0.94377 1.03802 1.02171 1.21814 0.95671 0.81482 1.03664 1.48214 1.63164 1.14909 1.06495 1.18646 0.95574 0.90803 0.80501 1.21713 0.99545 1.30590 1.06271 0.93208 1.25843 1.01720 0.94449 0.97081 1.70049 1.37094 1.32684 1.16985 0.85437 0.79076 0.78807 0.77633 1.20722 1.19718 1.18713 1.21097 0.76654 0.86107 0.86591 1.90610 1.46735 1.22683 1.87726 1.22712 0.93085 1.00982 0.88695 0.86340 1.62939 1.31746 1.33349 1.02616 1.23278 0.91728 1.02768 0.90822 1.23183 0.99436 0.99995 0.95860 1.22334 0.94221 1.00121 0.95192 0.86623 1.22181 1.00862 0.98910 1.00081 0.94243 0.91057 0.88496 0.88223 0.91224 0.95993 0.98777 0.92398 0.84436 0.88125 0.89572 0.87616 0.92692 0.95411 0.90359 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 9.71 71.98 0.70 -3.50 16 2 C 0.10 3.01 5.99 86.38 0.52 3.53 16 3 N -0.60 -25.78 2.17 -826.14 -1.79 -27.57 16 4 C 0.27 14.68 5.15 85.63 0.44 15.12 16 5 C -0.54 -32.28 9.39 25.60 0.24 -32.04 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 9 Si 0.97 46.14 29.54 68.60 2.03 48.17 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.51 21.53 4.70 87.66 0.41 21.94 16 14 O -0.60 -31.39 14.46 -3.04 -0.04 -31.43 16 15 C 0.06 1.76 3.29 44.31 0.15 1.91 16 16 H 0.12 3.11 5.73 -2.38 -0.01 3.10 16 17 N -0.68 -20.33 7.39 -484.04 -3.58 -23.91 16 18 C 0.04 0.87 7.55 86.65 0.65 1.52 16 19 C -0.15 -2.87 6.61 31.80 0.21 -2.66 16 20 C -0.10 -2.30 2.95 -9.92 -0.03 -2.33 16 21 H 0.12 1.97 7.99 -2.39 -0.02 1.95 16 22 C -0.16 -4.70 7.68 71.98 0.55 -4.14 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.64 4.67 -2.39 -0.01 1.63 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.10 2.50 5.65 -2.38 -0.01 2.49 16 27 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 28 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 29 H -0.01 -0.37 7.49 -2.39 -0.02 -0.39 16 30 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.34 12.04 7.44 -89.69 -0.67 11.37 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.05 1.26 7.86 -2.39 -0.02 1.24 16 36 H 0.03 1.02 6.56 -2.39 -0.02 1.00 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.85 4.73 -2.38 -0.01 1.84 16 Total: -1.00 -74.11 295.91 1.59 -72.52 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.38 Total: 18.87 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.31 Total: 0.28 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -5.08 Total: -108.40 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.04 Total: -31.43 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.11 1.59 -72.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226937855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.574 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds