Wall clock time and date at job start Mon Mar 30 2020 04:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47223 * 2 1 4 4 C 1.46497 * 119.99432 * 264.10607 * 3 2 1 5 5 C 1.50700 * 109.47217 * 269.99590 * 4 3 2 6 6 H 1.08003 * 119.99975 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99876 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00307 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46934 * 90.00125 * 9 7 5 11 11 H 1.48495 * 109.46828 * 210.00288 * 9 7 5 12 12 H 1.48498 * 109.46980 * 330.00189 * 9 7 5 13 13 C 1.34767 * 120.00020 * 84.10851 * 3 2 1 14 14 O 1.21282 * 119.99896 * 185.30941 * 13 3 2 15 15 C 1.50703 * 120.00517 * 5.30574 * 13 3 2 16 16 H 1.09001 * 110.36154 * 332.40094 * 15 13 3 17 17 N 1.48554 * 110.51467 * 209.98656 * 15 13 3 18 18 C 1.48563 * 104.22211 * 201.68513 * 17 15 13 19 19 C 1.54374 * 104.59414 * 39.48179 * 18 17 15 20 20 C 1.54267 * 105.06181 * 336.14934 * 19 18 17 21 21 H 1.08989 * 110.32558 * 118.89575 * 20 19 18 22 22 C 1.53003 * 110.32349 * 241.10548 * 20 19 18 23 23 H 1.09004 * 109.47339 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47252 * 300.00158 * 1 2 3 25 25 H 1.09002 * 109.47064 * 60.00402 * 1 2 3 26 26 H 1.08998 * 109.47252 * 239.99842 * 2 1 3 27 27 H 1.09002 * 109.47064 * 119.99598 * 2 1 3 28 28 H 1.09004 * 109.47528 * 30.00181 * 4 3 2 29 29 H 1.09006 * 109.46942 * 149.99722 * 4 3 2 30 30 H 0.96991 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99914 * 321.23974 * 17 15 13 32 32 H 1.08992 * 110.41205 * 280.70348 * 18 17 15 33 33 H 1.09003 * 110.40746 * 158.25737 * 18 17 15 34 34 H 1.08998 * 110.32863 * 217.25346 * 19 18 17 35 35 H 1.09000 * 110.32795 * 95.04110 * 19 18 17 36 36 H 1.09001 * 109.46790 * 63.47621 * 22 20 19 37 37 H 1.08998 * 109.46960 * 183.47631 * 22 20 19 38 38 H 1.08999 * 109.46836 * 303.48121 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3853 2.0283 -1.2621 5 6 3.8436 1.7791 -1.5489 6 1 4.4376 1.1966 -0.8602 7 6 4.4196 2.2948 -2.6906 8 7 3.6964 3.0045 -3.5291 9 14 6.2271 1.9853 -3.0465 10 1 6.3691 0.7368 -3.8377 11 1 6.7820 3.1262 -3.8182 12 1 6.9670 1.8470 -1.7665 13 6 2.1300 2.0565 1.1609 14 8 2.4417 3.2285 1.1532 15 6 1.8676 1.3553 2.4689 16 1 1.1670 0.5328 2.3244 17 7 1.3425 2.3123 3.4764 18 6 1.6386 1.6673 4.7815 19 6 3.0381 1.0421 4.5978 20 6 3.1888 0.8368 3.0763 21 1 4.0319 1.4147 2.6980 22 6 3.3743 -0.6478 2.7561 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7806 1.6172 -2.0705 29 1 2.2083 3.1011 -1.1853 30 1 4.1016 3.3676 -4.3320 31 1 1.8048 3.2061 3.4016 32 1 0.9023 0.8937 4.9990 33 1 1.6563 2.4114 5.5779 34 1 3.0964 0.0852 5.1164 35 1 3.8073 1.7208 4.9662 36 1 2.4800 -1.1974 3.0501 37 1 3.5409 -0.7706 1.6860 38 1 4.2341 -1.0330 3.3044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226937864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:18 Heat of formation + Delta-G solvation = -42.547760 kcal Electronic energy + Delta-G solvation = -18326.049626 eV Core-core repulsion = 15588.983358 eV Total energy + Delta-G solvation = -2737.066267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95951 -37.50089 -35.32070 -32.82626 -31.88144 -30.16803 -29.46923 -27.11196 -25.57837 -23.26850 -22.85433 -21.58760 -20.09186 -18.60895 -16.84805 -16.40854 -15.81335 -15.16795 -14.58535 -14.37141 -14.09906 -13.75154 -13.53174 -13.35091 -12.88965 -12.48627 -12.38273 -12.14436 -11.92076 -11.69118 -11.33928 -11.18887 -11.09263 -10.89743 -10.81724 -10.62569 -10.54107 -10.36159 -10.12545 -9.63426 -8.85993 -8.59527 -8.43876 -7.63883 -6.04511 -4.09647 3.28665 3.31853 3.35950 3.40144 3.87041 4.43203 4.47768 4.67693 4.82684 5.00054 5.23321 5.25821 5.30759 5.37207 5.47736 5.52060 5.65401 5.67577 5.78358 5.82518 5.84416 5.89650 6.04086 6.07489 6.25100 6.25774 6.34668 6.54742 6.71147 7.09946 7.44605 7.48653 7.57366 7.92241 8.23535 8.43982 8.89322 9.08930 9.55491 11.03486 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.007352 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.228327 B = 3807.687098 C = 4083.561172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.592 5.592 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.515 3.485 14 O -0.543 6.543 15 C 0.051 3.949 16 H 0.104 0.896 17 N -0.654 5.654 18 C 0.040 3.960 19 C -0.151 4.151 20 C -0.115 4.115 21 H 0.081 0.919 22 C -0.145 4.145 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.351 0.649 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 -8.488 13.124 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.323 5.323 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.301 3.699 14 O -0.421 6.421 15 C -0.062 4.062 16 H 0.122 0.878 17 N -0.284 5.284 18 C -0.090 4.090 19 C -0.190 4.190 20 C -0.136 4.136 21 H 0.099 0.901 22 C -0.202 4.202 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.169 0.831 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.542 -7.893 12.849 15.749 hybrid contribution 2.047 -0.148 -0.286 2.073 sum -2.495 -8.042 12.563 15.124 Atomic orbital electron populations 1.22269 0.96721 1.01436 1.02585 1.21589 0.93587 0.84377 1.02962 1.48169 1.62806 1.13030 1.08318 1.19293 0.95232 0.94511 0.78394 1.21439 0.95180 1.33542 1.06426 0.92524 1.24937 0.98187 0.94930 0.96023 1.69933 1.36162 1.34913 1.12245 0.86515 0.84980 0.77755 0.78285 1.20610 1.21067 1.19960 1.20092 0.77814 0.86980 0.85044 1.90641 1.48341 1.16169 1.86939 1.22862 0.95639 0.95998 0.91717 0.87810 1.63299 1.58045 1.05637 1.01423 1.23016 0.94888 0.98657 0.92424 1.22983 0.98764 1.01660 0.95641 1.22397 0.98377 0.97801 0.95001 0.90100 1.21911 1.01497 0.94386 1.02444 0.92173 0.92651 0.92092 0.89858 0.91288 0.95000 0.93784 0.92705 0.83053 0.90419 0.90827 0.90903 0.91543 0.92429 0.91534 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.98 37.16 0.37 -2.04 16 2 C 0.10 1.62 5.74 -4.04 -0.02 1.60 16 3 N -0.59 -12.70 2.47 -175.06 -0.43 -13.14 16 4 C 0.24 6.48 5.17 -5.20 -0.03 6.45 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.51 11.00 6.71 -10.99 -0.07 10.93 16 14 O -0.54 -13.90 15.58 5.56 0.09 -13.82 16 15 C 0.05 0.83 2.57 -67.23 -0.17 0.65 16 16 H 0.10 1.52 5.08 -51.93 -0.26 1.26 16 17 N -0.65 -10.03 7.40 -103.96 -0.77 -10.80 16 18 C 0.04 0.46 7.47 -2.18 -0.02 0.45 16 19 C -0.15 -1.72 6.65 -25.35 -0.17 -1.89 16 20 C -0.12 -1.64 3.20 -89.23 -0.29 -1.93 16 21 H 0.08 1.38 7.85 -51.94 -0.41 0.97 16 22 C -0.14 -1.75 7.85 37.16 0.29 -1.46 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.78 7.27 -51.93 -0.38 0.40 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 27 H 0.07 0.97 3.85 -51.93 -0.20 0.77 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.35 5.89 7.84 -39.29 -0.31 5.58 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 37 H 0.07 0.90 6.80 -51.93 -0.35 0.54 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -32.17 302.62 -7.39 -39.56 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.03 Total: 3.61 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.52 Total: -0.85 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.47 Total: -49.92 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.17 -7.39 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226937864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.986 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds