Wall clock time and date at job start Mon Mar 30 2020 04:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47223 * 2 1 4 4 C 1.46497 * 119.99432 * 264.10607 * 3 2 1 5 5 C 1.50700 * 109.47217 * 269.99590 * 4 3 2 6 6 H 1.08003 * 119.99975 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99876 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00307 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46934 * 90.00125 * 9 7 5 11 11 H 1.48495 * 109.46828 * 210.00288 * 9 7 5 12 12 H 1.48498 * 109.46980 * 330.00189 * 9 7 5 13 13 C 1.34767 * 120.00020 * 84.10851 * 3 2 1 14 14 O 1.21282 * 119.99896 * 185.30941 * 13 3 2 15 15 C 1.50703 * 120.00517 * 5.30574 * 13 3 2 16 16 H 1.09001 * 110.36154 * 332.40094 * 15 13 3 17 17 N 1.48554 * 110.51467 * 209.98656 * 15 13 3 18 18 C 1.48563 * 104.22211 * 201.68513 * 17 15 13 19 19 C 1.54374 * 104.59414 * 39.48179 * 18 17 15 20 20 C 1.54267 * 105.06181 * 336.14934 * 19 18 17 21 21 H 1.08989 * 110.32558 * 118.89575 * 20 19 18 22 22 C 1.53003 * 110.32349 * 241.10548 * 20 19 18 23 23 H 1.09004 * 109.47339 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47252 * 300.00158 * 1 2 3 25 25 H 1.09002 * 109.47064 * 60.00402 * 1 2 3 26 26 H 1.08998 * 109.47252 * 239.99842 * 2 1 3 27 27 H 1.09002 * 109.47064 * 119.99598 * 2 1 3 28 28 H 1.09004 * 109.47528 * 30.00181 * 4 3 2 29 29 H 1.09006 * 109.46942 * 149.99722 * 4 3 2 30 30 H 0.96991 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99914 * 321.23974 * 17 15 13 32 32 H 1.08992 * 110.41205 * 280.70348 * 18 17 15 33 33 H 1.09003 * 110.40746 * 158.25737 * 18 17 15 34 34 H 1.08998 * 110.32863 * 217.25346 * 19 18 17 35 35 H 1.09000 * 110.32795 * 95.04110 * 19 18 17 36 36 H 1.09001 * 109.46790 * 63.47621 * 22 20 19 37 37 H 1.08998 * 109.46960 * 183.47631 * 22 20 19 38 38 H 1.08999 * 109.46836 * 303.48121 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3853 2.0283 -1.2621 5 6 3.8436 1.7791 -1.5489 6 1 4.4376 1.1966 -0.8602 7 6 4.4196 2.2948 -2.6906 8 7 3.6964 3.0045 -3.5291 9 14 6.2271 1.9853 -3.0465 10 1 6.3691 0.7368 -3.8377 11 1 6.7820 3.1262 -3.8182 12 1 6.9670 1.8470 -1.7665 13 6 2.1300 2.0565 1.1609 14 8 2.4417 3.2285 1.1532 15 6 1.8676 1.3553 2.4689 16 1 1.1670 0.5328 2.3244 17 7 1.3425 2.3123 3.4764 18 6 1.6386 1.6673 4.7815 19 6 3.0381 1.0421 4.5978 20 6 3.1888 0.8368 3.0763 21 1 4.0319 1.4147 2.6980 22 6 3.3743 -0.6478 2.7561 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7806 1.6172 -2.0705 29 1 2.2083 3.1011 -1.1853 30 1 4.1016 3.3676 -4.3320 31 1 1.8048 3.2061 3.4016 32 1 0.9023 0.8937 4.9990 33 1 1.6563 2.4114 5.5779 34 1 3.0964 0.0852 5.1164 35 1 3.8073 1.7208 4.9662 36 1 2.4800 -1.1974 3.0501 37 1 3.5409 -0.7706 1.6860 38 1 4.2341 -1.0330 3.3044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226937864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:17 Heat of formation + Delta-G solvation = -65.878399 kcal Electronic energy + Delta-G solvation = -18327.061318 eV Core-core repulsion = 15588.983358 eV Total energy + Delta-G solvation = -2738.077960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.41712 -38.88264 -37.04519 -34.94650 -32.95502 -31.77555 -30.69969 -28.92166 -26.81950 -25.09219 -24.19876 -22.89762 -21.23771 -20.08822 -18.66690 -18.29617 -17.47540 -16.62539 -16.31515 -15.45854 -15.41110 -15.35080 -14.90623 -14.55434 -14.32449 -14.08392 -13.81375 -13.47169 -13.28677 -13.15324 -13.00053 -12.72603 -12.59989 -12.34916 -12.22920 -12.19606 -11.88369 -11.75313 -11.66829 -11.42115 -10.66659 -10.59165 -9.74663 -9.45952 -8.24780 -6.40409 1.34022 1.37244 1.47306 1.70689 2.23057 2.40395 3.04368 3.28808 3.50056 3.71870 3.85406 4.05354 4.12473 4.32086 4.38896 4.40863 4.51872 4.59924 4.69027 4.80829 4.89077 4.93243 4.95096 5.00481 5.01973 5.16416 5.19778 5.23814 5.31373 5.38413 5.54634 5.66557 5.83802 6.03211 6.20823 6.66430 6.75403 7.24139 7.41631 8.82565 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.007352 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.228327 B = 3807.687098 C = 4083.561172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 N -0.597 5.597 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.503 3.497 14 O -0.599 6.599 15 C 0.064 3.936 16 H 0.127 0.873 17 N -0.668 5.668 18 C 0.041 3.959 19 C -0.142 4.142 20 C -0.117 4.117 21 H 0.041 0.959 22 C -0.142 4.142 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.022 0.978 29 H -0.006 1.006 30 H 0.268 0.732 31 H 0.338 0.662 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -11.174 15.031 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.327 5.327 4 C 0.139 3.861 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.197 1.197 13 C 0.292 3.708 14 O -0.480 6.480 15 C -0.049 4.049 16 H 0.145 0.855 17 N -0.297 5.297 18 C -0.088 4.088 19 C -0.181 4.181 20 C -0.138 4.138 21 H 0.059 0.941 22 C -0.199 4.199 23 H 0.119 0.881 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.040 0.960 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.334 -10.641 14.777 18.718 hybrid contribution 1.927 0.717 -0.870 2.233 sum -2.407 -9.924 13.907 17.254 Atomic orbital electron populations 1.22208 0.94493 1.03767 1.01690 1.21930 0.95361 0.81519 1.04198 1.48199 1.62753 1.14947 1.06834 1.18737 0.94684 0.92036 0.80631 1.21689 0.96036 1.33779 1.06677 0.92758 1.25891 1.03184 0.94396 0.95703 1.70060 1.38338 1.35653 1.12756 0.85398 0.78741 0.78361 0.78219 1.18577 1.20619 1.19747 1.21144 0.76408 0.86576 0.86675 1.90598 1.50739 1.18812 1.87896 1.22847 0.97377 0.95944 0.88766 0.85535 1.63379 1.58026 1.05191 1.03132 1.23192 0.95405 0.99462 0.90751 1.22945 0.98617 1.03247 0.93251 1.22420 0.95627 0.98775 0.96959 0.94066 1.21918 1.03699 0.92785 1.01531 0.88128 0.92439 0.94123 0.90479 0.88187 0.96029 0.98741 0.92354 0.84525 0.88265 0.89206 0.87845 0.91708 0.89549 0.93421 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.98 71.98 0.72 -3.59 16 2 C 0.09 2.94 5.74 86.38 0.50 3.43 16 3 N -0.60 -26.46 2.47 -826.16 -2.04 -28.50 16 4 C 0.26 14.59 5.17 85.63 0.44 15.03 16 5 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 9 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.50 22.24 6.71 87.66 0.59 22.83 16 14 O -0.60 -32.60 15.58 -3.04 -0.05 -32.65 16 15 C 0.06 1.98 2.57 44.32 0.11 2.10 16 16 H 0.13 3.33 5.08 -2.39 -0.01 3.32 16 17 N -0.67 -19.79 7.40 -482.81 -3.57 -23.36 16 18 C 0.04 0.81 7.47 86.45 0.65 1.45 16 19 C -0.14 -2.77 6.65 31.49 0.21 -2.57 16 20 C -0.12 -3.15 3.20 -9.90 -0.03 -3.18 16 21 H 0.04 1.43 7.85 -2.39 -0.02 1.41 16 22 C -0.14 -2.97 7.85 71.98 0.57 -2.41 16 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.49 7.27 -2.39 -0.02 1.48 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 2.56 8.03 -2.39 -0.02 2.54 16 27 H 0.10 2.57 3.85 -2.39 -0.01 2.56 16 28 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 29 H -0.01 -0.36 7.36 -2.38 -0.02 -0.38 16 30 H 0.27 15.39 8.31 -92.72 -0.77 14.62 16 31 H 0.34 11.54 7.84 -89.69 -0.70 10.84 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.45 7.71 -2.39 -0.02 1.43 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.33 8.02 -2.39 -0.02 1.31 16 37 H 0.05 1.18 6.80 -2.39 -0.02 1.16 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.54 302.62 1.44 -73.10 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.34 Total: 18.63 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.45 Total: 2.34 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -5.33 Total: -108.74 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.05 Total: -32.65 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.54 1.44 -73.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226937864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.217 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds