Wall clock time and date at job start Mon Mar 30 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46932 * 2 1 4 4 C 1.50698 * 109.47807 * 239.99849 * 2 1 3 5 5 H 1.08000 * 120.00093 * 245.36254 * 4 2 1 6 6 C 1.37879 * 119.99833 * 65.35005 * 4 2 1 7 7 N 1.31520 * 119.99531 * 5.16650 * 6 4 2 8 8 Si 1.86793 * 120.00203 * 185.15606 * 6 4 2 9 9 H 1.48501 * 109.46940 * 85.00686 * 8 6 4 10 10 H 1.48504 * 109.47430 * 325.00943 * 8 6 4 11 11 H 1.48503 * 109.47248 * 205.00348 * 8 6 4 12 12 N 1.46508 * 109.47066 * 119.99682 * 2 1 3 13 13 C 1.46500 * 119.99587 * 60.00197 * 12 2 1 14 14 C 1.34775 * 120.00016 * 240.00181 * 12 2 1 15 15 O 1.21282 * 120.00185 * 0.02562 * 14 12 2 16 16 C 1.50695 * 119.99718 * 179.97438 * 14 12 2 17 17 H 1.09003 * 110.43759 * 300.70354 * 16 14 12 18 18 C 1.54895 * 110.48776 * 63.24521 * 16 14 12 19 19 C 1.55030 * 102.68324 * 156.51652 * 18 16 14 20 20 C 1.54262 * 104.28109 * 322.23185 * 19 18 16 21 21 H 1.08998 * 110.07534 * 142.82747 * 20 19 18 22 22 N 1.46898 * 110.03457 * 264.23452 * 20 19 18 23 23 C 1.53877 * 106.59759 * 23.51974 * 20 19 18 24 24 H 1.08993 * 109.46657 * 54.89633 * 1 2 3 25 25 H 1.09004 * 109.46489 * 174.89147 * 1 2 3 26 26 H 1.08992 * 109.47480 * 294.89096 * 1 2 3 27 27 H 0.96999 * 119.99687 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46974 * 90.00153 * 13 12 2 29 29 H 1.09000 * 109.46889 * 209.99909 * 13 12 2 30 30 H 1.09000 * 109.47321 * 330.00166 * 13 12 2 31 31 H 1.09002 * 110.75092 * 274.93421 * 18 16 14 32 32 H 1.08996 * 110.75061 * 38.30250 * 18 16 14 33 33 H 1.08997 * 110.52066 * 203.48722 * 19 18 16 34 34 H 1.08994 * 110.48271 * 80.96088 * 19 18 16 35 35 H 1.00898 * 111.00048 * 297.16803 * 22 20 19 36 36 H 1.00901 * 111.00182 * 61.12286 * 22 20 19 37 37 H 1.08999 * 110.03004 * 240.70742 * 23 20 19 38 38 H 1.09000 * 110.06902 * 119.30786 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.5802 -1.6362 -1.1336 6 6 1.7929 -0.1785 -2.4797 7 7 1.2159 0.9978 -2.5939 8 14 2.2879 -1.1285 -4.0099 9 1 1.2111 -2.0864 -4.3678 10 1 3.5451 -1.8734 -3.7451 11 1 2.5011 -0.1811 -5.1334 12 7 2.0184 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1257 1.8917 16 6 3.2950 -0.7458 3.3142 17 1 2.4587 -1.1059 3.9134 18 6 4.2254 -1.9200 2.9210 19 6 5.0870 -2.1131 4.1953 20 6 5.3331 -0.6794 4.7090 21 1 5.3134 -0.6639 5.7986 22 7 6.6284 -0.1860 4.2224 23 6 4.1937 0.1899 4.1487 24 1 -0.3632 0.5909 -0.8407 25 1 -0.3632 -1.0237 -0.0915 26 1 -0.3634 0.4325 0.9321 27 1 1.0476 1.3721 -3.4727 28 1 2.4158 -2.7377 0.9718 29 1 1.6238 -2.2852 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 3.6450 -2.8170 2.7050 32 1 4.8508 -1.6491 2.0704 33 1 6.0317 -2.5972 3.9481 34 1 4.5435 -2.6965 4.9384 35 1 7.3868 -0.7464 4.5814 36 1 6.6478 -0.1547 3.2141 37 1 4.6020 0.9780 3.5159 38 1 3.6204 0.6273 4.9661 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227797691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:48 Heat of formation + Delta-G solvation = -48.588743 kcal Electronic energy + Delta-G solvation = -18133.587936 eV Core-core repulsion = 15396.259712 eV Total energy + Delta-G solvation = -2737.328224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75124 -37.51803 -35.27024 -33.05258 -32.14678 -29.54432 -28.67754 -26.59815 -26.12006 -25.16893 -22.25800 -20.41866 -19.73736 -18.14985 -16.90719 -16.29869 -16.00625 -15.44951 -14.94049 -14.43424 -14.32360 -13.86911 -13.33841 -13.09473 -12.62706 -12.25342 -12.02970 -11.71611 -11.58146 -11.38376 -11.20803 -11.02718 -10.95430 -10.88306 -10.73608 -10.60053 -10.51620 -10.24757 -10.16200 -9.17434 -8.79947 -8.67089 -8.40948 -7.55533 -6.06854 -4.12863 3.26756 3.33308 3.35094 3.44717 3.97114 4.40336 4.50144 4.66428 4.72529 5.03130 5.24698 5.38290 5.41069 5.49675 5.59150 5.61028 5.68806 5.78452 5.91898 5.99377 6.06035 6.23323 6.29209 6.34651 6.55604 6.73052 6.77431 7.02374 7.19540 7.40883 7.45764 7.56664 7.72740 7.95908 8.19700 8.57741 8.87298 9.12050 9.53076 11.00508 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.006399 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.571806 B = 4374.720533 C = 4556.522363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.255 3.745 3 H 0.068 0.932 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.592 5.592 13 C 0.087 3.913 14 C 0.508 3.492 15 O -0.550 6.550 16 C -0.114 4.114 17 H 0.092 0.908 18 C -0.113 4.113 19 C -0.158 4.158 20 C 0.088 3.912 21 H 0.079 0.921 22 N -0.843 5.843 23 C -0.107 4.107 24 H 0.077 0.923 25 H 0.033 0.967 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.335 0.665 36 H 0.344 0.656 37 H 0.095 0.905 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -8.111 12.208 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.155 3.845 3 H 0.086 0.914 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.212 1.212 12 N -0.323 5.323 13 C -0.057 4.057 14 C 0.295 3.705 15 O -0.429 6.429 16 C -0.136 4.136 17 H 0.110 0.890 18 C -0.151 4.151 19 C -0.198 4.198 20 C -0.024 4.024 21 H 0.097 0.903 22 N -0.372 5.372 23 C -0.145 4.145 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.113 0.887 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.196 -6.669 12.327 14.630 hybrid contribution 0.178 -1.676 -1.416 2.201 sum 4.374 -8.345 10.912 14.417 Atomic orbital electron populations 1.22023 0.98636 0.99764 0.99519 1.18938 0.90445 0.94965 0.80144 0.91401 1.21275 1.36165 1.08581 0.90455 0.92376 1.24910 0.95146 0.94733 0.98961 1.69944 1.42638 1.15870 1.23991 0.86548 0.78848 0.79675 0.82530 1.20545 1.20051 1.21157 1.48179 1.49050 1.11475 1.23603 1.21617 1.01263 0.83533 0.99250 1.20273 0.78946 0.86980 0.84304 1.90638 1.58214 1.17187 1.76882 1.22145 0.98875 0.96741 0.95816 0.88986 1.22556 0.97488 0.97427 0.97652 1.23261 1.00105 0.98386 0.98046 1.22079 0.89770 0.91552 0.99022 0.90302 1.58962 1.03778 1.59009 1.15436 1.22122 0.94815 0.98267 0.99267 0.90390 0.94837 0.96686 0.92695 0.93375 0.92921 0.91190 0.90623 0.91031 0.91854 0.91261 0.85269 0.84249 0.88672 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.84 37.16 0.33 -3.02 16 2 C 0.26 6.57 2.51 -69.08 -0.17 6.40 16 3 H 0.07 2.05 6.88 -51.93 -0.36 1.70 16 4 C -0.53 -14.31 8.34 -34.44 -0.29 -14.59 16 5 H 0.06 1.55 7.52 -52.49 -0.39 1.16 16 6 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 7 N -0.89 -25.58 11.99 55.43 0.66 -24.92 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.59 -12.61 2.75 -175.26 -0.48 -13.09 16 13 C 0.09 1.45 8.11 59.85 0.49 1.93 16 14 C 0.51 10.56 7.06 -10.99 -0.08 10.49 16 15 O -0.55 -13.81 14.76 5.56 0.08 -13.73 16 16 C -0.11 -1.71 2.31 -90.11 -0.21 -1.92 16 17 H 0.09 1.21 7.40 -51.93 -0.38 0.82 16 18 C -0.11 -1.46 5.49 -24.66 -0.14 -1.59 16 19 C -0.16 -1.63 6.52 -25.00 -0.16 -1.79 16 20 C 0.09 1.00 4.04 -66.60 -0.27 0.73 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 22 N -0.84 -9.66 9.11 -3.72 -0.03 -9.70 16 23 C -0.11 -1.53 5.91 -25.61 -0.15 -1.69 16 24 H 0.08 2.02 6.84 -51.93 -0.36 1.67 16 25 H 0.03 0.73 6.88 -51.93 -0.36 0.37 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.05 0.77 7.57 -51.93 -0.39 0.38 16 29 H 0.05 0.69 5.96 -51.93 -0.31 0.38 16 30 H 0.07 1.17 6.53 -51.93 -0.34 0.83 16 31 H 0.08 0.89 6.28 -51.93 -0.33 0.56 16 32 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 33 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.34 3.05 9.06 -39.29 -0.36 2.69 16 36 H 0.34 4.21 8.97 -39.29 -0.35 3.86 16 37 H 0.09 1.68 6.64 -51.93 -0.34 1.34 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -31.18 297.38 -6.99 -38.17 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.93 Total: 5.99 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.75 Total: -3.34 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.15 Total: -47.70 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.18 -6.99 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227797691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.423 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds