Wall clock time and date at job start Mon Mar 30 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00171 * 2 1 4 4 N 1.34784 * 120.00138 * 180.27528 * 2 1 3 5 5 C 1.46490 * 120.00010 * 179.72749 * 4 2 1 6 6 H 1.09007 * 110.29137 * 324.32375 * 5 4 2 7 7 C 1.54258 * 110.33122 * 86.44849 * 5 4 2 8 8 C 1.54376 * 105.06084 * 118.89206 * 7 5 4 9 9 N 1.48558 * 104.59602 * 23.85921 * 8 7 5 10 10 C 1.46897 * 111.00365 * 200.95488 * 9 8 7 11 11 C 1.52996 * 109.47117 * 174.68376 * 10 9 8 12 12 C 1.53005 * 109.47157 * 174.74379 * 11 10 9 13 13 C 1.50695 * 109.47332 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99811 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00077 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99728 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00160 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47190 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47327 * 119.99737 * 17 15 13 20 20 H 1.48501 * 109.47341 * 240.00413 * 17 15 13 21 21 C 1.48559 * 104.21939 * 320.51481 * 9 8 7 22 22 H 1.09001 * 109.47229 * 90.00540 * 1 2 3 23 23 H 1.09007 * 109.46696 * 209.99955 * 1 2 3 24 24 H 1.08995 * 109.47127 * 329.99695 * 1 2 3 25 25 H 0.97000 * 119.99404 * 359.72218 * 4 2 1 26 26 H 1.09001 * 110.33172 * 237.79509 * 7 5 4 27 27 H 1.09003 * 110.31959 * 359.90033 * 7 5 4 28 28 H 1.09003 * 110.40909 * 142.63746 * 8 7 5 29 29 H 1.08994 * 110.41661 * 265.07909 * 8 7 5 30 30 H 1.09001 * 109.47426 * 294.68802 * 10 9 8 31 31 H 1.09006 * 109.46728 * 54.68558 * 10 9 8 32 32 H 1.08997 * 109.47629 * 294.74122 * 11 10 9 33 33 H 1.09002 * 109.47314 * 54.74326 * 11 10 9 34 34 H 1.09003 * 109.47316 * 300.00321 * 12 11 10 35 35 H 1.09002 * 109.47052 * 59.99786 * 12 11 10 36 36 H 0.97005 * 119.99508 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.41377 * 280.69894 * 21 9 8 38 38 H 1.09006 * 110.41181 * 158.26006 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0056 5 6 3.6459 -1.1672 -0.0116 6 1 4.0214 -0.3352 -0.6075 7 6 4.1878 -1.0811 1.4301 8 6 5.0034 -2.3764 1.6301 9 7 5.3864 -2.7935 0.2566 10 6 5.7238 -4.2225 0.2152 11 6 5.9833 -4.6435 -1.2327 12 6 6.4616 -6.0965 -1.2635 13 6 6.7178 -6.5110 -2.6895 14 1 6.5553 -5.8084 -3.4935 15 6 7.1586 -7.7874 -2.9678 16 7 7.3550 -8.6433 -1.9889 17 14 7.4755 -8.3014 -4.7355 18 1 7.1804 -7.1631 -5.6425 19 1 8.8981 -8.6990 -4.8880 20 1 6.6005 -9.4503 -5.0815 21 6 4.1798 -2.5073 -0.5615 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.6959 -2.0072 -0.0056 26 1 4.8306 -0.2079 1.5415 27 1 3.3637 -1.0370 2.1422 28 1 5.8923 -2.1773 2.2287 29 1 4.3896 -3.1430 2.1028 30 1 6.6182 -4.4022 0.8117 31 1 4.8947 -4.8034 0.6194 32 1 5.0623 -4.5519 -1.8084 33 1 6.7485 -3.9998 -1.6666 34 1 7.3826 -6.1882 -0.6878 35 1 5.6964 -6.7402 -0.8295 36 1 7.6647 -9.5415 -2.1848 37 1 3.4371 -3.2944 -0.4318 38 1 4.4486 -2.4066 -1.6131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228261287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:03 Heat of formation + Delta-G solvation = -50.624960 kcal Electronic energy + Delta-G solvation = -16990.620787 eV Core-core repulsion = 14253.204266 eV Total energy + Delta-G solvation = -2737.416521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.12846 -38.50443 -35.03789 -33.70172 -32.14343 -30.51406 -29.39689 -28.06005 -26.00595 -23.09842 -21.58487 -21.25937 -20.24054 -19.67830 -17.10350 -16.79601 -16.27743 -15.85741 -15.21979 -14.64463 -14.40325 -14.22866 -13.91720 -13.45299 -12.91019 -12.68500 -12.65951 -12.41070 -12.20957 -11.79780 -11.50134 -11.42471 -11.22824 -10.87496 -10.82841 -10.51558 -10.42882 -10.06348 -9.70716 -9.35805 -9.24575 -9.05543 -8.35731 -8.32733 -6.00637 -4.02675 2.44505 2.99691 3.30682 3.38224 3.42652 4.22209 4.44223 4.47673 4.66243 4.70823 4.93895 5.02790 5.11051 5.24979 5.33866 5.35403 5.50863 5.62653 5.66990 5.72776 5.79345 5.92709 6.01681 6.05777 6.25125 6.32804 6.61062 6.73691 6.95550 7.16004 7.25014 7.33201 7.67215 7.81545 7.99617 8.03298 8.42854 9.04702 9.61509 11.10845 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036690 B = 0.003961 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.958986 B = 7067.311003 C = 7531.858348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.724 5.724 5 C 0.137 3.863 6 H 0.098 0.902 7 C -0.131 4.131 8 C 0.030 3.970 9 N -0.507 5.507 10 C 0.046 3.954 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.031 3.969 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.400 0.600 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.049 0.951 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 13.335 6.726 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.425 6.425 4 N -0.377 5.377 5 C 0.032 3.968 6 H 0.116 0.884 7 C -0.170 4.170 8 C -0.099 4.099 9 N -0.231 5.231 10 C -0.082 4.082 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.098 4.098 22 H 0.112 0.888 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.235 0.765 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.551 14.194 6.564 19.442 hybrid contribution -0.730 -1.448 -0.600 1.729 sum -12.281 12.747 5.964 18.678 Atomic orbital electron populations 1.21892 0.91785 1.04778 1.04824 1.20823 0.90571 0.83552 0.75386 1.90726 1.70831 1.31416 1.49541 1.46285 1.07254 1.08788 1.75372 1.21762 0.78887 0.99254 0.96916 0.88378 1.22711 0.99592 0.98474 0.96251 1.23138 0.98983 0.95807 0.91933 1.65487 1.31281 1.19801 1.06552 1.22489 1.00104 0.85177 1.00400 1.21672 1.00443 1.00075 0.92306 1.19076 0.96287 0.89147 0.97079 1.21285 1.44225 0.97264 0.92871 0.92635 1.25032 0.95641 0.96752 0.97117 1.69978 1.46762 1.05656 1.31195 0.86543 0.77868 0.78517 0.85124 1.19719 1.20994 1.21056 1.23315 0.92223 0.94463 0.99818 0.88803 0.90218 0.88976 0.76492 0.90433 0.91233 0.90015 0.93947 0.90670 0.95151 0.93619 0.92392 0.96516 0.96853 0.93087 0.93252 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.30 36.01 0.37 -0.70 16 2 C 0.51 5.40 7.93 -10.98 -0.09 5.31 16 3 O -0.55 -8.30 16.80 5.56 0.09 -8.21 16 4 N -0.72 -6.92 5.04 -52.47 -0.26 -7.18 16 5 C 0.14 1.61 3.36 -66.55 -0.22 1.38 16 6 H 0.10 1.32 7.64 -51.93 -0.40 0.92 16 7 C -0.13 -1.49 6.78 -25.35 -0.17 -1.66 16 8 C 0.03 0.36 6.49 -2.19 -0.01 0.35 16 9 N -0.51 -7.47 5.45 -229.98 -1.25 -8.72 16 10 C 0.05 0.78 4.93 -3.83 -0.02 0.76 16 11 C -0.11 -2.19 4.86 -26.73 -0.13 -2.32 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.03 0.40 5.04 -2.18 -0.01 0.38 16 22 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.40 2.84 8.34 -40.82 -0.34 2.50 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.74 7.95 -51.93 -0.41 0.32 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.50 7.89 -51.93 -0.41 0.09 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.03 0.51 7.97 -51.93 -0.41 0.09 16 32 H 0.05 0.91 7.21 -51.93 -0.37 0.53 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.05 0.61 7.57 -51.93 -0.39 0.21 16 38 H 0.09 1.26 7.78 -51.93 -0.40 0.86 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -32.77 312.37 -8.33 -41.10 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.49 Total: -2.52 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.84 Total: -9.60 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.78 Total: -42.13 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.77 -8.33 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228261287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.529 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds