Wall clock time and date at job start Mon Mar 30 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00171 * 2 1 4 4 N 1.34784 * 120.00138 * 180.27528 * 2 1 3 5 5 C 1.46490 * 120.00010 * 179.72749 * 4 2 1 6 6 H 1.09007 * 110.29137 * 324.32375 * 5 4 2 7 7 C 1.54258 * 110.33122 * 86.44849 * 5 4 2 8 8 C 1.54376 * 105.06084 * 118.89206 * 7 5 4 9 9 N 1.48558 * 104.59602 * 23.85921 * 8 7 5 10 10 C 1.46897 * 111.00365 * 200.95488 * 9 8 7 11 11 C 1.52996 * 109.47117 * 174.68376 * 10 9 8 12 12 C 1.53005 * 109.47157 * 174.74379 * 11 10 9 13 13 C 1.50695 * 109.47332 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99811 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00077 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99728 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00160 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47190 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47327 * 119.99737 * 17 15 13 20 20 H 1.48501 * 109.47341 * 240.00413 * 17 15 13 21 21 C 1.48559 * 104.21939 * 320.51481 * 9 8 7 22 22 H 1.09001 * 109.47229 * 90.00540 * 1 2 3 23 23 H 1.09007 * 109.46696 * 209.99955 * 1 2 3 24 24 H 1.08995 * 109.47127 * 329.99695 * 1 2 3 25 25 H 0.97000 * 119.99404 * 359.72218 * 4 2 1 26 26 H 1.09001 * 110.33172 * 237.79509 * 7 5 4 27 27 H 1.09003 * 110.31959 * 359.90033 * 7 5 4 28 28 H 1.09003 * 110.40909 * 142.63746 * 8 7 5 29 29 H 1.08994 * 110.41661 * 265.07909 * 8 7 5 30 30 H 1.09001 * 109.47426 * 294.68802 * 10 9 8 31 31 H 1.09006 * 109.46728 * 54.68558 * 10 9 8 32 32 H 1.08997 * 109.47629 * 294.74122 * 11 10 9 33 33 H 1.09002 * 109.47314 * 54.74326 * 11 10 9 34 34 H 1.09003 * 109.47316 * 300.00321 * 12 11 10 35 35 H 1.09002 * 109.47052 * 59.99786 * 12 11 10 36 36 H 0.97005 * 119.99508 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.41377 * 280.69894 * 21 9 8 38 38 H 1.09006 * 110.41181 * 158.26006 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0056 5 6 3.6459 -1.1672 -0.0116 6 1 4.0214 -0.3352 -0.6075 7 6 4.1878 -1.0811 1.4301 8 6 5.0034 -2.3764 1.6301 9 7 5.3864 -2.7935 0.2566 10 6 5.7238 -4.2225 0.2152 11 6 5.9833 -4.6435 -1.2327 12 6 6.4616 -6.0965 -1.2635 13 6 6.7178 -6.5110 -2.6895 14 1 6.5553 -5.8084 -3.4935 15 6 7.1586 -7.7874 -2.9678 16 7 7.3550 -8.6433 -1.9889 17 14 7.4755 -8.3014 -4.7355 18 1 7.1804 -7.1631 -5.6425 19 1 8.8981 -8.6990 -4.8880 20 1 6.6005 -9.4503 -5.0815 21 6 4.1798 -2.5073 -0.5615 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.6959 -2.0072 -0.0056 26 1 4.8306 -0.2079 1.5415 27 1 3.3637 -1.0370 2.1422 28 1 5.8923 -2.1773 2.2287 29 1 4.3896 -3.1430 2.1028 30 1 6.6182 -4.4022 0.8117 31 1 4.8947 -4.8034 0.6194 32 1 5.0623 -4.5519 -1.8084 33 1 6.7485 -3.9998 -1.6666 34 1 7.3826 -6.1882 -0.6878 35 1 5.6964 -6.7402 -0.8295 36 1 7.6647 -9.5415 -2.1848 37 1 3.4371 -3.2944 -0.4318 38 1 4.4486 -2.4066 -1.6131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228261287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:03 Heat of formation + Delta-G solvation = -74.464893 kcal Electronic energy + Delta-G solvation = -16991.654564 eV Core-core repulsion = 14253.204266 eV Total energy + Delta-G solvation = -2738.450298 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06325 -39.56425 -36.43452 -35.25947 -33.77256 -31.63653 -30.50250 -29.01824 -27.73124 -24.74213 -22.73009 -22.47837 -21.18818 -21.14793 -18.51134 -17.93631 -17.64070 -17.01469 -16.47008 -16.11841 -15.75984 -15.47067 -15.09703 -14.48791 -14.22522 -13.96636 -13.89963 -13.31750 -13.25279 -13.17089 -12.92826 -12.73191 -12.67792 -12.39627 -12.32588 -12.17619 -11.74893 -11.49499 -11.35289 -11.07710 -10.96126 -10.55566 -10.14036 -9.48234 -8.20302 -6.30941 1.39984 1.40819 1.53945 1.63804 2.19330 2.41099 3.11188 3.13113 3.47627 3.70373 3.96808 4.04666 4.22787 4.26718 4.30129 4.42195 4.52713 4.63160 4.68209 4.69982 4.79512 4.91231 4.92957 4.98904 5.06566 5.11893 5.15403 5.23449 5.43868 5.52232 5.73128 5.85841 5.90078 6.00581 6.26996 6.56369 6.86122 7.25865 7.38385 8.91756 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036690 B = 0.003961 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.958986 B = 7067.311003 C = 7531.858348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.505 3.495 3 O -0.600 6.600 4 N -0.714 5.714 5 C 0.143 3.857 6 H 0.078 0.922 7 C -0.123 4.123 8 C 0.032 3.968 9 N -0.521 5.521 10 C 0.059 3.941 11 C -0.091 4.091 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.277 1.277 21 C 0.033 3.967 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.415 0.585 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.049 0.951 34 H -0.009 1.009 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.061 0.939 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.948 13.500 6.342 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.294 3.706 3 O -0.481 6.481 4 N -0.367 5.367 5 C 0.037 3.963 6 H 0.096 0.904 7 C -0.162 4.162 8 C -0.095 4.095 9 N -0.245 5.245 10 C -0.069 4.069 11 C -0.129 4.129 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.202 1.202 21 C -0.096 4.096 22 H 0.127 0.873 23 H 0.126 0.874 24 H 0.112 0.888 25 H 0.253 0.747 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.009 0.991 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.998 14.344 6.185 20.321 hybrid contribution -0.288 -1.498 -0.454 1.592 sum -13.287 12.846 5.730 19.349 Atomic orbital electron populations 1.21905 0.88000 1.06253 1.06183 1.21644 0.92323 0.82708 0.73931 1.90707 1.72190 1.33209 1.52000 1.46196 1.06332 1.09528 1.74646 1.21513 0.80311 0.97692 0.96803 0.90412 1.22644 0.99708 0.97769 0.96114 1.23174 0.99549 0.96295 0.90509 1.65411 1.32772 1.17834 1.08488 1.22199 1.00198 0.86880 0.97651 1.21411 1.00142 0.96422 0.94965 1.18974 0.94573 0.92153 0.95501 1.21717 1.44399 0.97755 0.94105 0.92374 1.25969 0.95222 0.96788 1.01852 1.70099 1.47462 1.06155 1.33635 0.85411 0.77869 0.78373 0.79470 1.18693 1.20449 1.20208 1.23284 0.91878 0.95394 0.99042 0.87339 0.87427 0.88830 0.74737 0.90936 0.90029 0.89538 0.92919 0.91298 0.94575 0.92929 0.93207 0.99052 0.98812 0.92766 0.92126 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.30 71.24 0.73 -0.85 16 2 C 0.50 9.92 7.93 87.66 0.70 10.61 16 3 O -0.60 -18.03 16.80 -3.03 -0.05 -18.08 16 4 N -0.71 -12.30 5.04 -438.30 -2.21 -14.51 16 5 C 0.14 3.20 3.36 45.89 0.15 3.35 16 6 H 0.08 2.10 7.64 -2.38 -0.02 2.08 16 7 C -0.12 -2.61 6.78 31.49 0.21 -2.40 16 8 C 0.03 0.74 6.49 86.45 0.56 1.30 16 9 N -0.52 -14.80 5.45 -881.51 -4.81 -19.60 16 10 C 0.06 1.97 4.93 86.30 0.43 2.39 16 11 C -0.09 -3.75 4.86 30.59 0.15 -3.60 16 12 C 0.03 1.35 4.97 29.85 0.15 1.50 16 13 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 16 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 17 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 C 0.03 0.80 5.04 86.45 0.44 1.24 16 22 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 23 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.42 4.74 8.34 -92.71 -0.77 3.97 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 1.55 7.95 -2.39 -0.02 1.53 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.12 7.89 -2.39 -0.02 1.10 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.16 7.97 -2.38 -0.02 1.14 16 32 H 0.05 2.06 7.21 -2.39 -0.02 2.04 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 37 H 0.06 1.37 7.57 -2.39 -0.02 1.35 16 38 H 0.08 2.18 7.78 -2.38 -0.02 2.16 16 Total: -1.00 -71.14 312.37 -0.29 -71.44 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.25 Total: 7.65 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.21 Total: -16.77 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -6.73 Total: -90.54 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.05 Total: -18.08 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.14 -0.29 -71.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228261287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.029 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds