Wall clock time and date at job start Mon Mar 30 2020 03:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47047 * 2 1 4 4 C 1.46831 * 110.98841 * 295.82141 * 3 2 1 5 5 H 1.09003 * 109.58926 * 200.98540 * 4 3 2 6 6 C 1.50702 * 109.72169 * 80.59691 * 4 3 2 7 7 H 1.07998 * 119.99729 * 0.70072 * 6 4 3 8 8 C 1.37875 * 119.99982 * 180.69750 * 6 4 3 9 9 N 1.31518 * 120.00038 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 120.00112 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46997 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47238 * 119.99894 * 10 8 6 13 13 H 1.48507 * 109.47382 * 240.00509 * 10 8 6 14 14 C 1.51397 * 108.71068 * 320.74802 * 4 3 2 15 15 O 1.21286 * 119.88124 * 108.65231 * 14 4 3 16 16 N 1.33612 * 120.23838 * 288.67310 * 14 4 3 17 17 C 1.46500 * 120.07561 * 180.48038 * 16 14 4 18 18 C 1.47249 * 119.84469 * 0.50775 * 16 14 4 19 19 C 1.53107 * 108.40110 * 69.98242 * 18 16 14 20 20 C 1.45757 * 110.99993 * 169.99910 * 3 2 1 21 21 H 1.09003 * 108.47498 * 178.37144 * 20 3 2 22 22 C 1.52997 * 108.59078 * 296.14933 * 20 3 2 23 23 H 1.09000 * 109.46435 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47027 * 299.99832 * 1 2 3 25 25 H 1.08997 * 109.47043 * 60.00261 * 1 2 3 26 26 H 1.08999 * 109.47549 * 240.00164 * 2 1 3 27 27 H 1.09001 * 109.47505 * 119.99634 * 2 1 3 28 28 H 0.97004 * 119.99956 * 179.97438 * 9 8 6 29 29 H 1.08996 * 109.47267 * 270.02310 * 17 16 14 30 30 H 1.08996 * 109.47281 * 30.02677 * 17 16 14 31 31 H 1.09004 * 109.46678 * 150.01980 * 17 16 14 32 32 H 1.09002 * 109.67606 * 310.25486 * 18 16 14 33 33 H 1.08998 * 109.67619 * 189.71326 * 18 16 14 34 34 H 1.08997 * 109.21991 * 154.08362 * 19 18 16 35 35 H 1.08997 * 109.22330 * 34.73306 * 19 18 16 36 36 H 1.09002 * 109.47153 * 184.38721 * 22 20 3 37 37 H 1.09001 * 109.46832 * 64.38912 * 22 20 3 38 38 H 1.09004 * 109.47261 * 304.38893 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6320 2.0799 -1.2340 5 1 2.2871 2.9367 -1.3922 6 6 0.2037 2.5485 -1.1265 7 1 -0.3598 2.3604 -0.2247 8 6 -0.3834 3.2175 -2.1795 9 7 0.3028 3.4461 -3.2779 10 14 -2.1540 3.7977 -2.0466 11 1 -2.7007 3.4187 -0.7189 12 1 -2.2038 5.2740 -2.1988 13 1 -2.9649 3.1621 -3.1161 14 6 1.7649 1.1178 -2.3954 15 8 0.7704 0.6836 -2.9372 16 7 2.9738 0.7450 -2.8254 17 6 3.0983 -0.1779 -3.9563 18 6 4.1804 1.2636 -2.1596 19 6 4.2714 0.6354 -0.7663 20 6 3.4572 1.4308 0.2363 21 1 3.7804 2.4712 0.1991 22 6 3.7389 0.8838 1.6371 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 -0.1104 3.9164 -4.0189 29 1 3.1138 -1.2037 -3.5881 30 1 2.2503 -0.0458 -4.6282 31 1 4.0236 0.0292 -4.4940 32 1 4.1128 2.3478 -2.0697 33 1 5.0633 0.9973 -2.7407 34 1 5.3138 0.6173 -0.4482 35 1 3.8917 -0.3855 -0.8074 36 1 4.8014 0.9835 1.8592 37 1 3.4559 -0.1679 1.6801 38 1 3.1602 1.4461 2.3700 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250193685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:51 Heat of formation + Delta-G solvation = -36.461714 kcal Electronic energy + Delta-G solvation = -19436.383206 eV Core-core repulsion = 16699.580849 eV Total energy + Delta-G solvation = -2736.802357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58662 -38.34240 -36.70816 -34.62814 -33.52731 -31.21216 -30.44456 -28.25752 -27.59979 -24.76930 -24.28650 -23.55386 -20.58482 -19.60255 -18.33578 -17.71921 -17.17105 -16.94477 -16.41647 -16.19348 -15.18948 -14.69542 -14.53179 -14.33503 -14.14213 -13.55423 -13.44486 -13.20210 -13.12456 -13.01738 -12.78029 -12.71260 -12.66586 -12.52652 -12.24742 -12.05544 -11.63660 -11.60690 -11.16849 -11.11170 -10.54541 -10.27398 -9.37501 -8.89377 -8.10757 -6.11213 1.38504 1.42507 1.52612 2.24546 2.40786 2.51915 3.28303 3.38321 3.84974 4.01309 4.14262 4.27745 4.38465 4.47538 4.55707 4.59268 4.66512 4.71265 4.78062 4.82926 4.87654 4.91745 4.98629 5.04975 5.14184 5.20166 5.27726 5.42669 5.49734 5.77076 5.83532 5.91344 6.08075 6.37715 6.61961 6.83481 6.99997 7.52785 7.90605 8.99291 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.011418 C = 0.009519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.839422 B = 2451.618505 C = 2940.848152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.065 3.935 3 N -0.523 5.523 4 C 0.216 3.784 5 H 0.028 0.972 6 C -0.490 4.490 7 H 0.068 0.932 8 C 0.021 3.979 9 N -0.915 5.915 10 Si 0.951 3.049 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.295 1.295 14 C 0.508 3.492 15 O -0.570 6.570 16 N -0.641 5.641 17 C 0.092 3.908 18 C 0.109 3.891 19 C -0.158 4.158 20 C 0.065 3.935 21 H 0.070 0.930 22 C -0.132 4.132 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.087 0.913 28 H 0.255 0.745 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 -6.025 5.690 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.062 4.062 3 N -0.247 5.247 4 C 0.105 3.895 5 H 0.046 0.954 6 C -0.529 4.529 7 H 0.086 0.914 8 C -0.179 4.179 9 N -0.554 5.554 10 Si 0.778 3.222 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.222 1.222 14 C 0.296 3.704 15 O -0.446 6.446 16 N -0.377 5.377 17 C -0.051 4.051 18 C -0.013 4.013 19 C -0.198 4.198 20 C -0.044 4.044 21 H 0.088 0.912 22 C -0.189 4.189 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.029 0.971 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.469 -5.924 5.623 13.279 hybrid contribution -0.813 0.095 -1.314 1.548 sum 9.656 -5.830 4.309 12.074 Atomic orbital electron populations 1.22070 0.96015 0.99931 1.03333 1.21951 0.95939 0.89126 0.99217 1.61830 1.12558 1.14890 1.35449 1.19438 0.97064 0.90501 0.82453 0.95404 1.21100 0.97111 1.33923 1.00737 0.91432 1.25585 1.01376 0.95959 0.94930 1.70004 1.38044 1.42088 1.05278 0.85602 0.80915 0.77695 0.77992 1.18598 1.20217 1.22188 1.22367 0.81692 0.80723 0.85579 1.90447 1.38844 1.56672 1.58662 1.48320 1.07092 1.48081 1.34194 1.21501 1.01990 0.92684 0.88941 1.21947 0.87125 0.98092 0.94107 1.22398 1.02876 0.99845 0.94652 1.21527 0.86388 0.99972 0.96465 0.91162 1.21832 1.02176 1.00602 0.94322 0.93494 0.93042 0.91418 0.97102 0.89464 0.93643 0.93045 0.94489 0.88933 0.92666 0.87044 0.86847 0.92252 0.89909 0.92705 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.72 8.54 71.98 0.61 -6.10 16 2 C 0.07 2.55 4.39 86.30 0.38 2.93 16 3 N -0.52 -21.35 4.31 -858.87 -3.70 -25.06 16 4 C 0.22 10.87 1.80 43.66 0.08 10.95 16 5 H 0.03 1.52 6.66 -2.39 -0.02 1.51 16 6 C -0.49 -27.69 5.84 25.60 0.15 -27.54 16 7 H 0.07 3.81 6.34 -2.91 -0.02 3.80 16 8 C 0.02 1.24 4.83 84.65 0.41 1.65 16 9 N -0.91 -56.00 12.02 21.45 0.26 -55.75 16 10 Si 0.95 46.95 29.54 68.60 2.03 48.98 16 11 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 14 C 0.51 25.68 3.50 88.06 0.31 25.98 16 15 O -0.57 -33.78 13.49 -3.05 -0.04 -33.82 16 16 N -0.64 -25.75 2.74 -845.40 -2.32 -28.06 16 17 C 0.09 3.15 10.43 127.77 1.33 4.49 16 18 C 0.11 3.31 5.95 86.27 0.51 3.83 16 19 C -0.16 -4.11 4.70 30.20 0.14 -3.97 16 20 C 0.07 2.01 2.22 44.70 0.10 2.11 16 21 H 0.07 2.23 7.77 -2.39 -0.02 2.21 16 22 C -0.13 -3.12 8.83 71.98 0.64 -2.49 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 2.13 7.84 -2.39 -0.02 2.11 16 25 H 0.07 3.56 4.12 -2.39 -0.01 3.55 16 26 H 0.01 0.46 5.22 -2.39 -0.01 0.45 16 27 H 0.09 2.83 5.97 -2.39 -0.01 2.82 16 28 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.51 7.41 -2.39 -0.02 1.49 16 31 H 0.09 2.41 7.88 -2.39 -0.02 2.39 16 32 H 0.05 1.87 6.76 -2.39 -0.02 1.85 16 33 H 0.11 2.47 7.79 -2.39 -0.02 2.45 16 34 H 0.11 2.03 8.10 -2.39 -0.02 2.02 16 35 H 0.06 1.68 6.56 -2.39 -0.02 1.67 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.26 6.40 -2.39 -0.02 1.24 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.98 280.15 1.93 -70.05 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.04 Total: 11.83 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 4.66 Total: 11.82 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -5.76 Total: -108.86 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.04 Total: -33.82 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -71.98 1.93 -70.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250193685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.590 kcal (2) G-P(sol) polarization free energy of solvation -71.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds