Wall clock time and date at job start Mon Mar 30 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.47065 * 109.47251 * 2 1 4 4 C 1.32548 * 116.57896 * 264.47058 * 3 2 1 5 5 O 1.22545 * 115.68345 * 351.30475 * 4 3 2 6 6 C 1.49306 * 127.96163 * 170.13596 * 4 3 2 7 7 H 1.11934 * 105.64347 * 215.76715 * 6 4 3 8 8 C 1.50578 * 110.98825 * 102.09654 * 6 4 3 9 9 H 1.08003 * 119.99766 * 229.78672 * 8 6 4 10 10 C 1.37881 * 120.00110 * 49.78398 * 8 6 4 11 11 N 1.31512 * 119.99970 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00105 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47007 * 60.00000 * 12 10 8 14 14 H 1.48495 * 109.47238 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47086 * 300.00292 * 12 10 8 16 16 N 1.44201 * 114.91456 * 333.23784 * 6 4 3 17 17 C 1.46220 * 114.15345 * 293.14822 * 16 6 4 18 18 C 1.44752 * 119.08268 * 71.76751 * 16 6 4 19 19 C 1.52897 * 112.89402 * 333.19409 * 18 16 6 20 20 C 1.45587 * 116.73168 * 84.52610 * 3 2 1 21 21 H 1.08852 * 109.82699 * 273.29678 * 20 3 2 22 22 C 1.53065 * 109.37392 * 33.09016 * 20 3 2 23 23 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47012 * 299.99671 * 1 2 3 25 25 H 1.09000 * 109.46881 * 59.99817 * 1 2 3 26 26 H 1.09008 * 109.47086 * 240.00523 * 2 1 3 27 27 H 1.08993 * 109.47333 * 120.00685 * 2 1 3 28 28 H 0.96999 * 120.00467 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.46803 * 196.98588 * 17 16 6 30 30 H 1.08994 * 109.47140 * 76.98348 * 17 16 6 31 31 H 1.09003 * 109.46372 * 316.98613 * 17 16 6 32 32 H 1.09673 * 109.72150 * 94.54559 * 18 16 6 33 33 H 1.09759 * 109.54635 * 212.09859 * 18 16 6 34 34 H 1.07834 * 112.34200 * 60.37303 * 19 18 16 35 35 H 1.09823 * 108.57958 * 180.44971 * 19 18 16 36 36 H 1.08995 * 109.47169 * 173.67537 * 22 20 3 37 37 H 1.09006 * 109.46991 * 293.67620 * 22 20 3 38 38 H 1.09003 * 109.47418 * 53.67202 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0203 1.3865 0.0000 4 6 2.3257 1.9076 -1.1799 5 8 2.3236 1.1248 -2.1227 6 6 2.6466 3.3301 -1.5004 7 1 2.2101 3.5170 -2.5140 8 6 4.1308 3.5244 -1.6641 9 1 4.6318 4.3244 -1.1392 10 6 4.8503 2.6810 -2.4839 11 7 4.2402 1.7072 -3.1234 12 14 6.6914 2.9225 -2.6875 13 1 7.3568 2.7923 -1.3663 14 1 7.2260 1.8935 -3.6151 15 1 6.9549 4.2741 -3.2434 16 7 2.0614 4.3006 -0.6088 17 6 0.6032 4.3783 -0.6828 18 6 2.5793 4.4214 0.7376 19 6 3.2085 3.1261 1.2513 20 6 2.1216 2.0453 1.2943 21 1 1.1680 2.5028 1.5514 22 6 2.4877 1.0121 2.3627 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.7462 1.1140 -3.7004 29 1 0.2653 5.3088 -0.2266 30 1 0.1668 3.5332 -0.1504 31 1 0.2905 4.3508 -1.7266 32 1 3.3338 5.2165 0.7739 33 1 1.7681 4.7097 1.4185 34 1 4.0394 2.8049 0.6436 35 1 3.5686 3.2941 2.2751 36 1 2.6740 1.5188 3.3095 37 1 1.6650 0.3072 2.4835 38 1 3.3848 0.4742 2.0558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250219661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:38 Heat of formation + Delta-G solvation = -1.679520 kcal Electronic energy + Delta-G solvation = -19367.819987 eV Core-core repulsion = 16632.525899 eV Total energy + Delta-G solvation = -2735.294088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60880 -36.23880 -35.51854 -32.41841 -31.91556 -29.52460 -28.66588 -27.91006 -24.61529 -23.92144 -22.10945 -21.85650 -19.76423 -17.99810 -16.43990 -16.27432 -15.30985 -14.59996 -14.39043 -14.11465 -13.80301 -13.28606 -13.06725 -12.66132 -12.50105 -12.12666 -12.08705 -11.92755 -11.49986 -11.33225 -11.25580 -11.03370 -10.84915 -10.79130 -10.69240 -10.38510 -10.30542 -9.98748 -9.80975 -9.24916 -8.38409 -8.27369 -7.54398 -6.79001 -5.71268 -3.99772 3.35383 3.40971 3.42036 4.07377 4.35169 4.44485 4.91641 5.23652 5.33268 5.35692 5.49520 5.64111 5.74807 5.80216 5.84448 5.88362 5.96351 6.06613 6.09743 6.12371 6.22769 6.29477 6.38912 6.45051 6.48307 6.61444 6.67954 6.87198 7.06946 7.13528 7.54091 7.85369 8.02855 8.43714 8.54624 8.80902 9.13567 9.61895 9.93097 11.11682 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.011242 C = 0.010156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.067978 B = 2490.016315 C = 2756.226326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.089 3.911 3 N -0.613 5.613 4 C 0.480 3.520 5 O -0.504 6.504 6 C 0.252 3.748 7 H 0.053 0.947 8 C -0.523 4.523 9 H 0.067 0.933 10 C 0.059 3.941 11 N -0.820 5.820 12 Si 0.888 3.112 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.275 1.275 16 N -0.593 5.593 17 C 0.060 3.940 18 C 0.109 3.891 19 C -0.157 4.157 20 C 0.151 3.849 21 H 0.050 0.950 22 C -0.160 4.160 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.257 0.743 29 H 0.051 0.949 30 H 0.011 0.989 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 0.246 10.192 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.035 4.035 3 N -0.351 5.351 4 C 0.268 3.732 5 O -0.375 6.375 6 C 0.142 3.858 7 H 0.071 0.929 8 C -0.561 4.561 9 H 0.085 0.915 10 C -0.149 4.149 11 N -0.454 5.454 12 Si 0.715 3.285 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.201 1.201 16 N -0.319 5.319 17 C -0.087 4.087 18 C -0.019 4.019 19 C -0.196 4.196 20 C 0.046 3.954 21 H 0.068 0.932 22 C -0.217 4.217 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.370 0.003 9.314 10.751 hybrid contribution 0.858 -0.669 0.376 1.151 sum -4.512 -0.666 9.690 10.710 Atomic orbital electron populations 1.22036 0.97422 1.00728 1.01353 1.21458 0.93075 0.86123 1.02795 1.47679 1.67950 1.13366 1.06070 1.22534 0.75431 0.94153 0.81070 1.90980 1.47346 1.57102 1.42070 1.18564 0.96695 0.79891 0.90621 0.92935 1.20545 0.90635 1.15671 1.29280 0.91523 1.25173 0.98271 0.95286 0.96152 1.70495 1.34087 1.14874 1.25931 0.86739 0.85970 0.77857 0.77896 1.20466 1.21449 1.20078 1.55362 1.06673 1.56406 1.13415 1.21890 0.87170 0.98645 1.01039 1.21236 0.97638 0.95887 0.87091 1.22562 0.99684 0.95774 1.01606 1.20724 0.97642 0.93191 0.83815 0.93178 1.22228 1.01752 0.99514 0.98239 0.92843 0.93636 0.92763 0.89342 0.92023 0.93247 0.92998 0.97033 0.92331 0.92734 0.93883 0.88167 0.92042 0.92097 0.92572 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.21 37.16 0.38 -2.11 16 2 C 0.09 1.66 5.51 -3.73 -0.02 1.64 16 3 N -0.61 -12.73 2.73 -167.07 -0.46 -13.18 16 4 C 0.48 12.14 5.66 -12.64 -0.07 12.07 16 5 O -0.50 -14.68 12.32 4.41 0.05 -14.62 16 6 C 0.25 6.39 1.55 -72.19 -0.11 6.28 16 7 H 0.05 1.53 7.92 -50.22 -0.40 1.13 16 8 C -0.52 -14.26 6.93 -34.50 -0.24 -14.49 16 9 H 0.07 1.79 7.65 -52.48 -0.40 1.39 16 10 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 11 N -0.82 -24.69 9.81 55.43 0.54 -24.15 16 12 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 N -0.59 -12.43 3.85 -241.17 -0.93 -13.36 16 17 C 0.06 1.08 9.35 59.70 0.56 1.63 16 18 C 0.11 1.96 5.23 -5.03 -0.03 1.93 16 19 C -0.16 -2.81 4.89 -26.61 -0.13 -2.94 16 20 C 0.15 2.58 3.02 -68.21 -0.21 2.37 16 21 H 0.05 0.82 7.14 -52.01 -0.37 0.45 16 22 C -0.16 -2.23 7.84 37.19 0.29 -1.94 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.93 6.64 -51.92 -0.34 1.59 16 27 H 0.06 1.00 5.50 -51.93 -0.29 0.71 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.01 0.20 7.38 -51.93 -0.38 -0.18 16 31 H 0.06 1.07 7.83 -51.93 -0.41 0.67 16 32 H 0.05 0.98 8.20 -51.55 -0.42 0.56 16 33 H 0.04 0.66 7.59 -51.50 -0.39 0.27 16 34 H 0.10 2.21 5.98 -52.58 -0.31 1.89 16 35 H 0.06 0.90 7.77 -51.46 -0.40 0.50 16 36 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 37 H 0.06 0.71 6.88 -51.93 -0.36 0.36 16 38 H 0.06 0.92 8.01 -51.93 -0.42 0.51 16 LS Contribution 288.32 15.07 4.34 4.34 Total: -1.00 -31.46 288.32 -7.26 -38.72 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.13 Total: -0.30 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 0.33 Total: 6.02 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.84 Total: -50.70 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.05 Total: -14.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.46 -7.26 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250219661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.039 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds