Wall clock time and date at job start Mon Mar 30 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.47065 * 109.47251 * 2 1 4 4 C 1.32548 * 116.57896 * 264.47058 * 3 2 1 5 5 O 1.22545 * 115.68345 * 351.30475 * 4 3 2 6 6 C 1.49306 * 127.96163 * 170.13596 * 4 3 2 7 7 H 1.11934 * 105.64347 * 215.76715 * 6 4 3 8 8 C 1.50578 * 110.98825 * 102.09654 * 6 4 3 9 9 H 1.08003 * 119.99766 * 229.78672 * 8 6 4 10 10 C 1.37881 * 120.00110 * 49.78398 * 8 6 4 11 11 N 1.31512 * 119.99970 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00105 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47007 * 60.00000 * 12 10 8 14 14 H 1.48495 * 109.47238 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47086 * 300.00292 * 12 10 8 16 16 N 1.44201 * 114.91456 * 333.23784 * 6 4 3 17 17 C 1.46220 * 114.15345 * 293.14822 * 16 6 4 18 18 C 1.44752 * 119.08268 * 71.76751 * 16 6 4 19 19 C 1.52897 * 112.89402 * 333.19409 * 18 16 6 20 20 C 1.45587 * 116.73168 * 84.52610 * 3 2 1 21 21 H 1.08852 * 109.82699 * 273.29678 * 20 3 2 22 22 C 1.53065 * 109.37392 * 33.09016 * 20 3 2 23 23 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47012 * 299.99671 * 1 2 3 25 25 H 1.09000 * 109.46881 * 59.99817 * 1 2 3 26 26 H 1.09008 * 109.47086 * 240.00523 * 2 1 3 27 27 H 1.08993 * 109.47333 * 120.00685 * 2 1 3 28 28 H 0.96999 * 120.00467 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.46803 * 196.98588 * 17 16 6 30 30 H 1.08994 * 109.47140 * 76.98348 * 17 16 6 31 31 H 1.09003 * 109.46372 * 316.98613 * 17 16 6 32 32 H 1.09673 * 109.72150 * 94.54559 * 18 16 6 33 33 H 1.09759 * 109.54635 * 212.09859 * 18 16 6 34 34 H 1.07834 * 112.34200 * 60.37303 * 19 18 16 35 35 H 1.09823 * 108.57958 * 180.44971 * 19 18 16 36 36 H 1.08995 * 109.47169 * 173.67537 * 22 20 3 37 37 H 1.09006 * 109.46991 * 293.67620 * 22 20 3 38 38 H 1.09003 * 109.47418 * 53.67202 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0203 1.3865 0.0000 4 6 2.3257 1.9076 -1.1799 5 8 2.3236 1.1248 -2.1227 6 6 2.6466 3.3301 -1.5004 7 1 2.2101 3.5170 -2.5140 8 6 4.1308 3.5244 -1.6641 9 1 4.6318 4.3244 -1.1392 10 6 4.8503 2.6810 -2.4839 11 7 4.2402 1.7072 -3.1234 12 14 6.6914 2.9225 -2.6875 13 1 7.3568 2.7923 -1.3663 14 1 7.2260 1.8935 -3.6151 15 1 6.9549 4.2741 -3.2434 16 7 2.0614 4.3006 -0.6088 17 6 0.6032 4.3783 -0.6828 18 6 2.5793 4.4214 0.7376 19 6 3.2085 3.1261 1.2513 20 6 2.1216 2.0453 1.2943 21 1 1.1680 2.5028 1.5514 22 6 2.4877 1.0121 2.3627 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.7462 1.1140 -3.7004 29 1 0.2653 5.3088 -0.2266 30 1 0.1668 3.5332 -0.1504 31 1 0.2905 4.3508 -1.7266 32 1 3.3338 5.2165 0.7739 33 1 1.7681 4.7097 1.4185 34 1 4.0394 2.8049 0.6436 35 1 3.5686 3.2941 2.2751 36 1 2.6740 1.5188 3.3095 37 1 1.6650 0.3072 2.4835 38 1 3.3848 0.4742 2.0558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250219661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:38 Heat of formation + Delta-G solvation = -23.739360 kcal Electronic energy + Delta-G solvation = -19368.776573 eV Core-core repulsion = 16632.525899 eV Total energy + Delta-G solvation = -2736.250674 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30688 -37.93842 -37.21512 -34.49611 -33.41729 -31.16594 -29.99841 -29.77250 -26.08011 -25.85363 -23.64565 -23.38388 -21.36465 -19.75580 -18.35340 -17.85245 -17.05675 -16.51387 -16.01842 -15.78764 -15.36213 -14.87638 -14.64534 -14.12877 -14.08958 -13.63416 -13.57999 -13.35540 -13.13307 -12.97848 -12.75820 -12.64709 -12.60229 -12.45159 -12.34762 -11.97063 -11.82105 -11.62283 -11.44892 -11.23651 -10.53687 -10.18116 -9.23624 -8.48428 -7.85530 -6.20934 1.39012 1.41952 1.49187 2.37195 2.44294 2.51889 3.20287 3.30510 3.90949 4.03481 4.09409 4.30599 4.40064 4.44242 4.48459 4.54153 4.60865 4.68247 4.76405 4.85373 4.91565 4.98964 5.01773 5.03640 5.04908 5.20356 5.21359 5.29330 5.38395 5.60051 5.69059 5.98595 6.07507 6.58868 6.72452 6.92706 7.24088 7.47185 8.03995 8.95605 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.011242 C = 0.010156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.067978 B = 2490.016315 C = 2756.226326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 N -0.611 5.611 4 C 0.479 3.521 5 O -0.557 6.557 6 C 0.265 3.735 7 H -0.005 1.005 8 C -0.525 4.525 9 H 0.068 0.932 10 C 0.004 3.996 11 N -0.857 5.857 12 Si 0.954 3.046 13 H -0.267 1.267 14 H -0.293 1.293 15 H -0.266 1.266 16 N -0.606 5.606 17 C 0.063 3.937 18 C 0.102 3.898 19 C -0.157 4.157 20 C 0.142 3.858 21 H 0.071 0.929 22 C -0.152 4.152 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.249 0.751 29 H 0.089 0.911 30 H 0.016 0.984 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 0.882 13.689 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 N -0.347 5.347 4 C 0.267 3.733 5 O -0.432 6.432 6 C 0.155 3.845 7 H 0.013 0.987 8 C -0.564 4.564 9 H 0.086 0.914 10 C -0.200 4.200 11 N -0.493 5.493 12 Si 0.779 3.221 13 H -0.192 1.192 14 H -0.219 1.219 15 H -0.191 1.191 16 N -0.331 5.331 17 C -0.084 4.084 18 C -0.024 4.024 19 C -0.196 4.196 20 C 0.039 3.961 21 H 0.089 0.911 22 C -0.210 4.210 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.753 0.668 12.887 14.128 hybrid contribution 0.906 -0.812 -0.631 1.371 sum -4.847 -0.144 12.255 13.180 Atomic orbital electron populations 1.21926 0.94882 1.02451 1.01038 1.21602 0.95083 0.84739 1.02221 1.47615 1.66465 1.14278 1.06301 1.22329 0.75154 0.93720 0.82094 1.90954 1.49945 1.58080 1.44248 1.18136 0.95528 0.81426 0.89438 0.98703 1.20825 0.91778 1.15172 1.28581 0.91393 1.26007 1.02886 0.95075 0.96008 1.70772 1.35496 1.16018 1.26978 0.85684 0.80478 0.77825 0.78090 1.19240 1.21865 1.19105 1.55255 1.08265 1.54755 1.14865 1.21954 0.85350 1.00634 1.00498 1.21410 0.99028 0.96086 0.85879 1.22505 0.98430 0.95791 1.02915 1.21090 0.98445 0.94022 0.82560 0.91099 1.22188 1.01571 0.99020 0.98207 0.90193 0.91167 0.95650 0.93583 0.88842 0.94198 0.89247 0.96580 0.94173 0.92891 0.89865 0.92729 0.88019 0.88783 0.90809 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 10.21 71.98 0.73 -3.59 16 2 C 0.09 3.17 5.51 86.27 0.47 3.64 16 3 N -0.61 -25.10 2.73 -801.58 -2.19 -27.29 16 4 C 0.48 25.16 5.66 87.57 0.50 25.66 16 5 O -0.56 -34.53 12.32 -7.13 -0.09 -34.61 16 6 C 0.27 14.02 1.55 43.46 0.07 14.09 16 7 H 0.00 -0.28 7.92 -0.79 -0.01 -0.29 16 8 C -0.52 -29.53 6.93 25.56 0.18 -29.35 16 9 H 0.07 3.70 7.65 -2.91 -0.02 3.68 16 10 C 0.00 0.25 5.30 84.66 0.45 0.70 16 11 N -0.86 -54.50 9.81 21.45 0.21 -54.29 16 12 Si 0.95 45.46 29.54 68.60 2.03 47.48 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 N -0.61 -25.10 3.85 -916.92 -3.53 -28.63 16 17 C 0.06 2.16 9.35 127.82 1.19 3.35 16 18 C 0.10 3.40 5.23 86.67 0.45 3.86 16 19 C -0.16 -5.21 4.89 30.67 0.15 -5.06 16 20 C 0.14 4.40 3.02 45.30 0.14 4.54 16 21 H 0.07 1.97 7.14 -2.47 -0.02 1.96 16 22 C -0.15 -3.58 7.84 72.00 0.56 -3.02 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 2.09 6.64 -2.38 -0.02 2.07 16 27 H 0.09 2.80 5.50 -2.39 -0.01 2.78 16 28 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.09 2.42 8.13 -2.39 -0.02 2.40 16 30 H 0.02 0.53 7.38 -2.39 -0.02 0.51 16 31 H 0.04 1.50 7.83 -2.39 -0.02 1.48 16 32 H 0.05 1.77 8.20 -2.03 -0.02 1.76 16 33 H 0.08 2.13 7.59 -1.98 -0.02 2.11 16 34 H 0.05 2.36 5.98 -3.00 -0.02 2.34 16 35 H 0.10 2.53 7.77 -1.95 -0.02 2.51 16 36 H 0.09 1.64 7.91 -2.39 -0.02 1.62 16 37 H 0.07 1.49 6.88 -2.38 -0.02 1.48 16 38 H 0.04 1.19 8.01 -2.39 -0.02 1.17 16 Total: -1.00 -74.32 288.32 2.37 -71.95 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.04 Total: 10.57 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.90 Total: 14.81 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.51 Total: -110.20 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.09 Total: -34.61 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.32 2.37 -71.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250219661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.214 kcal (2) G-P(sol) polarization free energy of solvation -74.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds