Wall clock time and date at job start Mon Mar 30 2020 03:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47257 * 2 1 4 4 C 1.47256 * 120.07843 * 270.02372 * 3 2 1 5 5 C 1.53108 * 108.40110 * 249.97380 * 4 3 2 6 6 C 1.51686 * 110.75435 * 274.40925 * 5 4 3 7 7 H 1.09004 * 108.59162 * 305.61920 * 6 5 4 8 8 C 1.52996 * 108.59177 * 187.77844 * 6 5 4 9 9 N 1.45963 * 114.06833 * 66.74717 * 6 5 4 10 10 C 1.46900 * 110.88044 * 57.32395 * 9 6 5 11 11 C 1.46874 * 112.31843 * 292.48312 * 9 6 5 12 12 H 1.09004 * 109.59713 * 205.45309 * 11 9 6 13 13 C 1.50694 * 109.60388 * 325.77621 * 11 9 6 14 14 H 1.07998 * 120.00584 * 354.23247 * 13 11 9 15 15 C 1.37883 * 119.99882 * 174.23991 * 13 11 9 16 16 N 1.31516 * 119.99866 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00015 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47085 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.46792 * 299.99766 * 17 15 13 20 20 H 1.48496 * 109.47050 * 59.99159 * 17 15 13 21 21 C 1.33615 * 120.07624 * 89.99915 * 3 2 1 22 22 O 1.21275 * 119.88224 * 0.51873 * 21 3 2 23 23 H 1.09004 * 109.47240 * 300.00162 * 1 2 3 24 24 H 1.08998 * 109.47030 * 59.99503 * 1 2 3 25 25 H 1.08996 * 109.47625 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46659 * 240.00326 * 2 1 3 27 27 H 1.09000 * 109.47050 * 119.99946 * 2 1 3 28 28 H 1.09006 * 109.67391 * 9.70120 * 4 3 2 29 29 H 1.08995 * 109.67710 * 130.20211 * 4 3 2 30 30 H 1.08999 * 109.22385 * 34.73371 * 5 4 3 31 31 H 1.08994 * 109.21818 * 154.12500 * 5 4 3 32 32 H 1.09002 * 109.47062 * 60.00010 * 8 6 5 33 33 H 1.08998 * 109.47275 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.47150 * 299.99769 * 8 6 5 35 35 H 1.08998 * 109.46596 * 290.46503 * 10 9 6 36 36 H 1.09000 * 109.47069 * 50.46117 * 10 9 6 37 37 H 1.08993 * 109.46849 * 170.46594 * 10 9 6 38 38 H 0.96999 * 119.99433 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2639 2.0771 -1.2743 5 6 3.7750 2.2564 -1.4437 6 6 4.2490 3.5147 -0.7416 7 1 3.6628 4.3581 -1.1064 8 6 5.7171 3.7507 -1.1021 9 7 4.1333 3.4645 0.7125 10 6 4.8776 2.3215 1.2579 11 6 2.7346 3.4439 1.1603 12 1 2.6678 3.8508 2.1694 13 6 1.8919 4.2716 0.2246 14 1 2.3610 4.8402 -0.5648 15 6 0.5218 4.3033 0.3762 16 7 -0.0495 3.6107 1.3372 17 14 -0.5229 5.3288 -0.7841 18 1 -1.9541 5.1934 -0.4121 19 1 -0.1180 6.7541 -0.6858 20 1 -0.3269 4.8536 -2.1773 21 6 2.2416 2.0125 1.1563 22 8 2.0481 1.4369 2.2061 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.8700 1.4829 -2.0988 29 1 1.7773 3.0523 -1.2595 30 1 4.2885 1.3937 -1.0194 31 1 4.0109 2.3281 -2.5054 32 1 5.8116 3.8699 -2.1814 33 1 6.0731 4.6525 -0.6040 34 1 6.3127 2.8976 -0.7772 35 1 4.3760 1.3949 0.9790 36 1 5.8904 2.3219 0.8550 37 1 4.9187 2.3997 2.3443 38 1 -1.0134 3.6327 1.4436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250268333.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:53 Heat of formation + Delta-G solvation = -12.656403 kcal Electronic energy + Delta-G solvation = -19583.383931 eV Core-core repulsion = 16847.613850 eV Total energy + Delta-G solvation = -2735.770081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88616 -36.69293 -34.75744 -33.07743 -31.48398 -30.56385 -27.96995 -27.52156 -24.54383 -23.65503 -22.81089 -22.07850 -18.90481 -17.89478 -16.82806 -15.96312 -15.58692 -14.83895 -14.33153 -14.16462 -13.71257 -13.26628 -12.86753 -12.73323 -12.43928 -12.31720 -12.02612 -11.59900 -11.48796 -11.43143 -11.21133 -11.01290 -10.89708 -10.78100 -10.65718 -10.45166 -10.20480 -10.04066 -9.93152 -9.23764 -8.61542 -8.42223 -7.49817 -7.18247 -6.20342 -4.23038 3.18594 3.26834 3.27113 4.05105 4.22732 4.33843 5.04082 5.15507 5.42310 5.56684 5.66085 5.83884 5.90102 5.94941 6.01985 6.06935 6.14509 6.18168 6.24273 6.30581 6.34579 6.40639 6.44220 6.59727 6.66922 6.78092 6.84473 6.93492 7.12405 7.32459 7.57430 7.74866 7.80738 8.07317 8.30187 8.67078 8.83466 9.32325 9.74380 10.85012 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.014282 C = 0.010937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.869252 B = 1960.080600 C = 2559.387111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 N -0.603 5.603 4 C 0.092 3.908 5 C -0.157 4.157 6 C 0.076 3.924 7 H 0.101 0.899 8 C -0.145 4.145 9 N -0.520 5.520 10 C 0.017 3.983 11 C 0.202 3.798 12 H 0.070 0.930 13 C -0.533 4.533 14 H 0.081 0.919 15 C 0.067 3.933 16 N -0.860 5.860 17 Si 0.892 3.108 18 H -0.286 1.286 19 H -0.272 1.272 20 H -0.273 1.273 21 C 0.537 3.463 22 O -0.580 6.580 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.130 0.870 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.024 0.976 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -3.009 -7.251 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.008 4.008 3 N -0.336 5.336 4 C -0.030 4.030 5 C -0.197 4.197 6 C -0.033 4.033 7 H 0.119 0.881 8 C -0.202 4.202 9 N -0.244 5.244 10 C -0.131 4.131 11 C 0.092 3.908 12 H 0.088 0.912 13 C -0.570 4.570 14 H 0.098 0.902 15 C -0.140 4.140 16 N -0.494 5.494 17 Si 0.719 3.281 18 H -0.212 1.212 19 H -0.198 1.198 20 H -0.199 1.199 21 C 0.326 3.674 22 O -0.458 6.458 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.250 -2.935 -6.396 8.779 hybrid contribution -1.207 -0.416 -0.958 1.596 sum 4.042 -3.350 -7.354 9.036 Atomic orbital electron populations 1.22062 0.96740 1.00088 1.02898 1.21150 0.94146 0.84745 1.00753 1.47694 1.66584 1.12245 1.07091 1.22415 0.95014 1.01501 0.84107 1.22314 0.97588 0.99626 1.00170 1.21324 0.95442 0.98188 0.88297 0.88136 1.21976 0.96961 1.01436 0.99876 1.62018 1.13809 1.40311 1.08225 1.22449 0.97856 0.92588 1.00249 1.19850 0.82932 0.88771 0.99221 0.91189 1.21024 0.91006 1.29212 1.15775 0.90179 1.25063 0.98047 0.95241 0.95620 1.69961 1.11121 1.38546 1.29814 0.86645 0.79450 0.81065 0.80975 1.21181 1.19756 1.19870 1.21884 0.74417 0.89330 0.81746 1.90477 1.54514 1.68684 1.32165 0.91382 0.93348 0.93498 0.92675 0.91327 0.93198 0.85304 0.92896 0.91875 0.93276 0.92291 0.93628 0.95744 0.92315 0.92162 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 37.16 0.38 -2.64 16 2 C 0.12 2.25 6.08 -4.04 -0.02 2.22 16 3 N -0.60 -13.17 2.34 -173.05 -0.40 -13.58 16 4 C 0.09 1.79 5.85 -3.57 -0.02 1.76 16 5 C -0.16 -2.67 4.70 -27.34 -0.13 -2.80 16 6 C 0.08 1.38 2.11 -68.89 -0.15 1.23 16 7 H 0.10 1.94 5.20 -51.93 -0.27 1.67 16 8 C -0.14 -2.14 8.81 37.16 0.33 -1.81 16 9 N -0.52 -10.93 4.80 -230.85 -1.11 -12.03 16 10 C 0.02 0.33 8.25 60.06 0.50 0.83 16 11 C 0.20 5.04 2.80 -69.69 -0.20 4.84 16 12 H 0.07 2.00 8.13 -51.93 -0.42 1.58 16 13 C -0.53 -13.14 4.93 -34.44 -0.17 -13.31 16 14 H 0.08 1.88 5.19 -52.49 -0.27 1.61 16 15 C 0.07 1.71 4.82 -17.82 -0.09 1.62 16 16 N -0.86 -23.88 12.10 55.43 0.67 -23.21 16 17 Si 0.89 19.66 29.52 -169.99 -5.02 14.64 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 C 0.54 13.56 2.65 -11.16 -0.03 13.53 16 22 O -0.58 -16.64 16.63 5.56 0.09 -16.55 16 23 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 27 H 0.07 1.41 7.40 -51.93 -0.38 1.03 16 28 H 0.05 0.85 7.92 -51.93 -0.41 0.44 16 29 H 0.13 2.81 4.14 -51.93 -0.22 2.60 16 30 H 0.05 0.93 6.56 -51.93 -0.34 0.59 16 31 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.64 6.39 -51.93 -0.33 0.31 16 35 H 0.02 0.51 5.22 -51.93 -0.27 0.24 16 36 H 0.06 0.97 5.96 -51.93 -0.31 0.66 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 283.36 15.07 4.27 4.27 Total: -1.00 -29.28 283.36 -6.83 -36.11 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.74 Total: 4.89 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 0.40 Total: 5.47 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.84 Total: -48.83 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.09 Total: -16.55 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.28 -6.83 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250268333.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.451 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds