Wall clock time and date at job start Mon Mar 30 2020 03:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47257 * 2 1 4 4 C 1.47256 * 120.07843 * 270.02372 * 3 2 1 5 5 C 1.53108 * 108.40110 * 249.97380 * 4 3 2 6 6 C 1.51686 * 110.75435 * 274.40925 * 5 4 3 7 7 H 1.09004 * 108.59162 * 305.61920 * 6 5 4 8 8 C 1.52996 * 108.59177 * 187.77844 * 6 5 4 9 9 N 1.45963 * 114.06833 * 66.74717 * 6 5 4 10 10 C 1.46900 * 110.88044 * 57.32395 * 9 6 5 11 11 C 1.46874 * 112.31843 * 292.48312 * 9 6 5 12 12 H 1.09004 * 109.59713 * 205.45309 * 11 9 6 13 13 C 1.50694 * 109.60388 * 325.77621 * 11 9 6 14 14 H 1.07998 * 120.00584 * 354.23247 * 13 11 9 15 15 C 1.37883 * 119.99882 * 174.23991 * 13 11 9 16 16 N 1.31516 * 119.99866 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00015 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47085 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.46792 * 299.99766 * 17 15 13 20 20 H 1.48496 * 109.47050 * 59.99159 * 17 15 13 21 21 C 1.33615 * 120.07624 * 89.99915 * 3 2 1 22 22 O 1.21275 * 119.88224 * 0.51873 * 21 3 2 23 23 H 1.09004 * 109.47240 * 300.00162 * 1 2 3 24 24 H 1.08998 * 109.47030 * 59.99503 * 1 2 3 25 25 H 1.08996 * 109.47625 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46659 * 240.00326 * 2 1 3 27 27 H 1.09000 * 109.47050 * 119.99946 * 2 1 3 28 28 H 1.09006 * 109.67391 * 9.70120 * 4 3 2 29 29 H 1.08995 * 109.67710 * 130.20211 * 4 3 2 30 30 H 1.08999 * 109.22385 * 34.73371 * 5 4 3 31 31 H 1.08994 * 109.21818 * 154.12500 * 5 4 3 32 32 H 1.09002 * 109.47062 * 60.00010 * 8 6 5 33 33 H 1.08998 * 109.47275 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.47150 * 299.99769 * 8 6 5 35 35 H 1.08998 * 109.46596 * 290.46503 * 10 9 6 36 36 H 1.09000 * 109.47069 * 50.46117 * 10 9 6 37 37 H 1.08993 * 109.46849 * 170.46594 * 10 9 6 38 38 H 0.96999 * 119.99433 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2639 2.0771 -1.2743 5 6 3.7750 2.2564 -1.4437 6 6 4.2490 3.5147 -0.7416 7 1 3.6628 4.3581 -1.1064 8 6 5.7171 3.7507 -1.1021 9 7 4.1333 3.4645 0.7125 10 6 4.8776 2.3215 1.2579 11 6 2.7346 3.4439 1.1603 12 1 2.6678 3.8508 2.1694 13 6 1.8919 4.2716 0.2246 14 1 2.3610 4.8402 -0.5648 15 6 0.5218 4.3033 0.3762 16 7 -0.0495 3.6107 1.3372 17 14 -0.5229 5.3288 -0.7841 18 1 -1.9541 5.1934 -0.4121 19 1 -0.1180 6.7541 -0.6858 20 1 -0.3269 4.8536 -2.1773 21 6 2.2416 2.0125 1.1563 22 8 2.0481 1.4369 2.2061 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.8700 1.4829 -2.0988 29 1 1.7773 3.0523 -1.2595 30 1 4.2885 1.3937 -1.0194 31 1 4.0109 2.3281 -2.5054 32 1 5.8116 3.8699 -2.1814 33 1 6.0731 4.6525 -0.6040 34 1 6.3127 2.8976 -0.7772 35 1 4.3760 1.3949 0.9790 36 1 5.8904 2.3219 0.8550 37 1 4.9187 2.3997 2.3443 38 1 -1.0134 3.6327 1.4436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250268333.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:53 Heat of formation + Delta-G solvation = -33.417841 kcal Electronic energy + Delta-G solvation = -19584.284215 eV Core-core repulsion = 16847.613850 eV Total energy + Delta-G solvation = -2736.670364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.62998 -38.43961 -36.52646 -34.98711 -33.06469 -32.18493 -29.76715 -29.00312 -26.24616 -25.43384 -24.33232 -23.71728 -20.51106 -19.68926 -18.62311 -17.59632 -17.34293 -16.72785 -16.02936 -15.86934 -15.29292 -14.92013 -14.43585 -14.36609 -14.07116 -13.95746 -13.57725 -13.31581 -13.08622 -12.93211 -12.86993 -12.62549 -12.57943 -12.36783 -12.22013 -12.01070 -11.82820 -11.71017 -11.56493 -10.96693 -10.50859 -10.32845 -9.25140 -8.90465 -8.17159 -6.24859 1.44046 1.47027 1.53875 2.19513 2.38446 2.62322 3.14617 3.45625 3.99622 4.06032 4.22973 4.35657 4.41262 4.47749 4.51231 4.55238 4.66011 4.74352 4.86838 4.89986 4.92499 4.94784 5.05533 5.08242 5.18361 5.19355 5.29667 5.38301 5.54769 5.66590 5.70299 5.88071 6.10547 6.31157 6.58693 6.79786 6.97650 7.34619 7.83515 8.88324 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.014282 C = 0.010937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.869252 B = 1960.080600 C = 2559.387111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.110 3.890 3 N -0.601 5.601 4 C 0.083 3.917 5 C -0.148 4.148 6 C 0.069 3.931 7 H 0.088 0.912 8 C -0.135 4.135 9 N -0.527 5.527 10 C 0.024 3.976 11 C 0.201 3.799 12 H 0.013 0.987 13 C -0.523 4.523 14 H 0.096 0.904 15 C 0.020 3.980 16 N -0.904 5.904 17 Si 0.955 3.045 18 H -0.298 1.298 19 H -0.268 1.268 20 H -0.250 1.250 21 C 0.537 3.463 22 O -0.630 6.630 23 H 0.018 0.982 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.010 0.990 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -3.287 -10.878 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 N -0.332 5.332 4 C -0.038 4.038 5 C -0.188 4.188 6 C -0.039 4.039 7 H 0.106 0.894 8 C -0.193 4.193 9 N -0.251 5.251 10 C -0.124 4.124 11 C 0.091 3.909 12 H 0.031 0.969 13 C -0.561 4.561 14 H 0.113 0.887 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.780 3.220 18 H -0.224 1.224 19 H -0.193 1.193 20 H -0.174 1.174 21 C 0.327 3.673 22 O -0.513 6.513 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.482 -3.207 -10.093 12.417 hybrid contribution -1.528 -0.335 0.173 1.574 sum 4.953 -3.542 -9.921 11.641 Atomic orbital electron populations 1.21953 0.96440 1.01700 1.00621 1.21371 0.94355 0.83531 1.01979 1.47752 1.65278 1.13182 1.07008 1.22548 0.96980 1.00726 0.83593 1.22243 0.95415 0.98695 1.02432 1.21475 0.97954 0.98439 0.86026 0.89411 1.21891 0.94009 1.01577 1.01782 1.61941 1.11317 1.41037 1.10768 1.22418 0.99277 0.91325 0.99374 1.19544 0.85703 0.88944 0.96709 0.96926 1.21262 0.90955 1.28458 1.15376 0.88682 1.25843 0.99339 0.96145 0.96853 1.70162 1.10760 1.40899 1.32235 0.85633 0.76861 0.79531 0.79983 1.22439 1.19318 1.17411 1.21801 0.74088 0.89295 0.82122 1.90434 1.56917 1.69758 1.34200 0.96256 0.92819 0.89970 0.88175 0.93192 0.89984 0.87583 0.92973 0.87857 0.90312 0.92711 0.92775 0.97184 0.88697 0.94014 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 10.24 71.98 0.74 -4.78 16 2 C 0.11 4.14 6.08 86.38 0.53 4.66 16 3 N -0.60 -25.88 2.34 -820.45 -1.92 -27.80 16 4 C 0.08 2.98 5.85 86.27 0.50 3.49 16 5 C -0.15 -4.46 4.70 30.20 0.14 -4.32 16 6 C 0.07 2.32 2.11 44.66 0.09 2.41 16 7 H 0.09 3.17 5.20 -2.39 -0.01 3.16 16 8 C -0.14 -3.42 8.81 71.98 0.63 -2.79 16 9 N -0.53 -22.04 4.80 -884.27 -4.24 -26.29 16 10 C 0.02 0.94 8.25 127.69 1.05 2.00 16 11 C 0.20 10.43 2.80 43.65 0.12 10.55 16 12 H 0.01 0.79 8.13 -2.39 -0.02 0.78 16 13 C -0.52 -26.02 4.93 25.60 0.13 -25.90 16 14 H 0.10 4.37 5.19 -2.91 -0.02 4.35 16 15 C 0.02 1.05 4.82 84.66 0.41 1.46 16 16 N -0.90 -52.42 12.10 21.45 0.26 -52.16 16 17 Si 0.96 40.20 29.52 68.60 2.02 42.23 16 18 H -0.30 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 21 C 0.54 28.01 2.65 88.06 0.23 28.25 16 22 O -0.63 -38.29 16.63 -3.02 -0.05 -38.34 16 23 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.10 2.86 8.03 -2.39 -0.02 2.85 16 27 H 0.05 2.06 7.40 -2.39 -0.02 2.04 16 28 H 0.08 2.43 7.92 -2.38 -0.02 2.41 16 29 H 0.11 4.40 4.14 -2.39 -0.01 4.39 16 30 H 0.05 1.62 6.56 -2.39 -0.02 1.60 16 31 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.28 6.39 -2.39 -0.02 1.27 16 35 H 0.01 0.41 5.22 -2.39 -0.01 0.40 16 36 H 0.09 2.93 5.96 -2.39 -0.01 2.91 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -68.26 283.36 1.70 -66.57 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 1.04 Total: 20.75 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 4.58 Total: 15.03 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.90 Total: -106.24 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.05 Total: -38.34 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.02 Total: 42.23 kcal Total: -68.26 1.70 -66.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250268333.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.151 kcal (2) G-P(sol) polarization free energy of solvation -68.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds