Wall clock time and date at job start Mon Mar 30 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47310 * 2 1 4 4 C 1.47248 * 120.07618 * 90.00056 * 3 2 1 5 5 C 1.53112 * 108.40232 * 249.97246 * 4 3 2 6 6 H 1.09008 * 109.21870 * 34.74270 * 5 4 3 7 7 C 1.53007 * 109.21929 * 154.12565 * 5 4 3 8 8 C 1.51680 * 110.75485 * 274.41060 * 5 4 3 9 9 N 1.45756 * 113.93505 * 66.77125 * 8 5 4 10 10 C 1.46893 * 111.00445 * 57.29547 * 9 8 5 11 11 C 1.46876 * 112.43543 * 292.27779 * 9 8 5 12 12 H 1.09003 * 109.60113 * 205.54583 * 11 9 8 13 13 C 1.50697 * 109.60358 * 325.86384 * 11 9 8 14 14 H 1.08004 * 120.00373 * 125.67605 * 13 11 9 15 15 C 1.37877 * 120.00156 * 305.67177 * 13 11 9 16 16 N 1.31521 * 120.00065 * 172.80959 * 15 13 11 17 17 Si 1.86800 * 119.99951 * 352.81317 * 15 13 11 18 18 H 1.48507 * 109.47022 * 90.14069 * 17 15 13 19 19 H 1.48503 * 109.46971 * 210.13382 * 17 15 13 20 20 H 1.48490 * 109.47218 * 330.13968 * 17 15 13 21 21 C 1.33605 * 120.07663 * 269.72201 * 3 2 1 22 22 O 1.21283 * 119.88628 * 0.53694 * 21 3 2 23 23 H 1.09004 * 109.46889 * 60.00129 * 1 2 3 24 24 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47508 * 300.00136 * 1 2 3 26 26 H 1.09004 * 109.46889 * 119.99871 * 2 1 3 27 27 H 1.09005 * 109.47067 * 239.99602 * 2 1 3 28 28 H 1.09003 * 109.67667 * 9.69560 * 4 3 2 29 29 H 1.08999 * 109.68135 * 130.24353 * 4 3 2 30 30 H 1.08993 * 109.46984 * 60.00421 * 7 5 4 31 31 H 1.09007 * 109.46784 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.47030 * 299.99701 * 7 5 4 33 33 H 1.09003 * 108.58984 * 187.91655 * 8 5 4 34 34 H 1.08992 * 108.59268 * 305.61223 * 8 5 4 35 35 H 1.09001 * 109.46786 * 63.95877 * 10 9 8 36 36 H 1.09000 * 109.47158 * 183.95487 * 10 9 8 37 37 H 1.09000 * 109.47413 * 303.95869 * 10 9 8 38 38 H 0.96998 * 119.99898 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2643 2.0769 1.2742 5 6 1.2017 3.1662 1.4432 6 1 0.2601 2.8179 1.0186 7 6 1.0068 3.4528 2.9334 8 6 1.6242 4.4427 0.7411 9 7 1.6817 4.3278 -0.7108 10 6 0.3852 3.9055 -1.2572 11 6 2.7582 3.4355 -1.1603 12 1 3.0637 3.7108 -2.1698 13 6 3.9351 3.5527 -0.2264 14 1 4.3451 2.6686 0.2393 15 6 4.4886 4.7884 0.0336 16 7 5.4206 4.9112 0.9533 17 14 3.9145 6.2883 -0.9204 18 1 2.7798 6.9255 -0.2050 19 1 5.0329 7.2582 -1.0377 20 1 3.4745 5.8737 -2.2767 21 6 2.2468 2.0105 -1.1561 22 8 2.0400 1.4398 -2.2061 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.1968 1.3672 2.0989 29 1 3.2555 2.5301 1.2596 30 1 1.9489 3.7912 3.3646 31 1 0.2504 4.2278 3.0584 32 1 0.6816 2.5435 3.4388 33 1 0.9178 5.2315 0.9996 34 1 2.6101 4.7302 1.1063 35 1 -0.3616 4.6733 -1.0554 36 1 0.4748 3.7598 -2.3337 37 1 0.0805 2.9700 -0.7881 38 1 5.8097 5.7806 1.1365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250325028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:18 Heat of formation + Delta-G solvation = -11.435099 kcal Electronic energy + Delta-G solvation = -19559.054982 eV Core-core repulsion = 16823.337861 eV Total energy + Delta-G solvation = -2735.717121 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24763 -36.91979 -35.31364 -33.01236 -32.52800 -30.71038 -28.36475 -26.41743 -25.55580 -23.82381 -23.32541 -21.51953 -19.36151 -18.27616 -17.16921 -16.27298 -15.68508 -15.05515 -14.90965 -13.81908 -13.68818 -13.55779 -13.37872 -13.06765 -12.74223 -12.48745 -12.24975 -11.98335 -11.67921 -11.59878 -11.25228 -11.12880 -10.95708 -10.90032 -10.76480 -10.56920 -10.22065 -9.90051 -9.79368 -9.34239 -8.93733 -8.53596 -7.90634 -7.36053 -6.26794 -4.31046 3.44935 3.46954 3.54371 3.65099 3.78281 4.43993 4.85302 5.21122 5.22901 5.38507 5.42766 5.56717 5.59232 5.63505 5.76675 5.91502 5.93069 6.04026 6.07498 6.13305 6.23913 6.25397 6.37507 6.42620 6.46829 6.57032 6.64851 6.80193 6.95796 7.22215 7.26681 7.33148 7.85500 7.97297 8.23588 8.30185 8.61945 9.08702 9.31491 10.79014 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.011954 C = 0.010925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.456766 B = 2341.662502 C = 2562.356268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.603 5.603 4 C 0.085 3.915 5 C -0.130 4.130 6 H 0.058 0.942 7 C -0.136 4.136 8 C 0.055 3.945 9 N -0.530 5.530 10 C 0.017 3.983 11 C 0.165 3.835 12 H 0.076 0.924 13 C -0.537 4.537 14 H 0.090 0.910 15 C 0.088 3.912 16 N -0.882 5.882 17 Si 0.914 3.086 18 H -0.272 1.272 19 H -0.310 1.310 20 H -0.266 1.266 21 C 0.513 3.487 22 O -0.579 6.579 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.146 0.854 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 -3.495 3.543 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.335 5.335 4 C -0.036 4.036 5 C -0.151 4.151 6 H 0.076 0.924 7 C -0.195 4.195 8 C -0.073 4.073 9 N -0.254 5.254 10 C -0.132 4.132 11 C 0.056 3.944 12 H 0.094 0.906 13 C -0.575 4.575 14 H 0.108 0.892 15 C -0.118 4.118 16 N -0.517 5.517 17 Si 0.743 3.257 18 H -0.198 1.198 19 H -0.238 1.238 20 H -0.190 1.190 21 C 0.301 3.699 22 O -0.458 6.458 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.163 0.837 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.522 -3.227 2.897 9.562 hybrid contribution -0.603 -0.086 -0.020 0.610 sum -9.126 -3.314 2.877 10.126 Atomic orbital electron populations 1.22119 0.96789 1.01221 1.01959 1.21319 0.93793 0.84192 1.02170 1.47896 1.65131 1.12993 1.07437 1.22854 1.04268 0.93458 0.83033 1.21752 0.98714 0.98384 0.96217 0.92392 1.21688 1.01820 1.00548 0.95414 1.21771 1.04109 0.94525 0.86908 1.61973 1.03674 1.49973 1.09821 1.22409 0.92145 0.98475 1.00128 1.20367 0.90963 0.82994 1.00027 0.90614 1.20686 1.13056 0.95551 1.28169 0.89216 1.24934 0.93474 0.99407 0.93993 1.69928 1.26295 1.25381 1.30139 0.86227 0.76623 0.80825 0.82008 1.19754 1.23846 1.19023 1.21948 0.75054 0.90549 0.82349 1.90555 1.54101 1.69217 1.31957 0.92580 0.92430 0.92876 0.91447 0.90609 0.92395 0.83743 0.91940 0.93183 0.93469 0.93379 0.87179 0.92543 0.92003 0.95413 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.77 6.13 -4.05 -0.02 1.75 16 3 N -0.60 -11.70 2.34 -173.06 -0.40 -12.11 16 4 C 0.09 1.56 5.24 -3.58 -0.02 1.54 16 5 C -0.13 -2.23 2.30 -91.23 -0.21 -2.44 16 6 H 0.06 1.00 6.20 -51.92 -0.32 0.68 16 7 C -0.14 -1.96 8.99 37.16 0.33 -1.63 16 8 C 0.05 1.09 3.64 -5.11 -0.02 1.07 16 9 N -0.53 -11.41 2.97 -239.11 -0.71 -12.12 16 10 C 0.02 0.32 8.39 60.06 0.50 0.82 16 11 C 0.16 3.91 2.04 -69.69 -0.14 3.77 16 12 H 0.08 1.95 7.36 -51.93 -0.38 1.56 16 13 C -0.54 -13.56 5.71 -34.44 -0.20 -13.76 16 14 H 0.09 2.42 6.29 -52.48 -0.33 2.09 16 15 C 0.09 2.29 3.94 -17.82 -0.07 2.22 16 16 N -0.88 -23.97 13.96 55.43 0.77 -23.19 16 17 Si 0.91 21.89 24.93 -169.99 -4.24 17.65 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.31 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.27 -6.48 6.66 56.52 0.38 -6.10 16 21 C 0.51 11.65 4.47 -11.16 -0.05 11.60 16 22 O -0.58 -14.44 16.63 5.55 0.09 -14.35 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 26 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 27 H 0.08 1.34 7.40 -51.93 -0.38 0.95 16 28 H 0.06 0.92 7.53 -51.93 -0.39 0.53 16 29 H 0.15 3.15 3.81 -51.93 -0.20 2.95 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 33 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.11 2.49 4.50 -51.93 -0.23 2.25 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 37 H 0.03 0.53 5.18 -51.93 -0.27 0.26 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -28.21 280.35 -5.65 -33.85 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.87 Total: 3.03 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 0.49 Total: 3.01 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.34 Total: -47.42 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.24 Total: 17.65 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.21 -5.65 -33.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250325028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.418 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds