Wall clock time and date at job start Mon Mar 30 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47310 * 2 1 4 4 C 1.47248 * 120.07618 * 90.00056 * 3 2 1 5 5 C 1.53112 * 108.40232 * 249.97246 * 4 3 2 6 6 H 1.09008 * 109.21870 * 34.74270 * 5 4 3 7 7 C 1.53007 * 109.21929 * 154.12565 * 5 4 3 8 8 C 1.51680 * 110.75485 * 274.41060 * 5 4 3 9 9 N 1.45756 * 113.93505 * 66.77125 * 8 5 4 10 10 C 1.46893 * 111.00445 * 57.29547 * 9 8 5 11 11 C 1.46876 * 112.43543 * 292.27779 * 9 8 5 12 12 H 1.09003 * 109.60113 * 205.54583 * 11 9 8 13 13 C 1.50697 * 109.60358 * 325.86384 * 11 9 8 14 14 H 1.08004 * 120.00373 * 125.67605 * 13 11 9 15 15 C 1.37877 * 120.00156 * 305.67177 * 13 11 9 16 16 N 1.31521 * 120.00065 * 172.80959 * 15 13 11 17 17 Si 1.86800 * 119.99951 * 352.81317 * 15 13 11 18 18 H 1.48507 * 109.47022 * 90.14069 * 17 15 13 19 19 H 1.48503 * 109.46971 * 210.13382 * 17 15 13 20 20 H 1.48490 * 109.47218 * 330.13968 * 17 15 13 21 21 C 1.33605 * 120.07663 * 269.72201 * 3 2 1 22 22 O 1.21283 * 119.88628 * 0.53694 * 21 3 2 23 23 H 1.09004 * 109.46889 * 60.00129 * 1 2 3 24 24 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47508 * 300.00136 * 1 2 3 26 26 H 1.09004 * 109.46889 * 119.99871 * 2 1 3 27 27 H 1.09005 * 109.47067 * 239.99602 * 2 1 3 28 28 H 1.09003 * 109.67667 * 9.69560 * 4 3 2 29 29 H 1.08999 * 109.68135 * 130.24353 * 4 3 2 30 30 H 1.08993 * 109.46984 * 60.00421 * 7 5 4 31 31 H 1.09007 * 109.46784 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.47030 * 299.99701 * 7 5 4 33 33 H 1.09003 * 108.58984 * 187.91655 * 8 5 4 34 34 H 1.08992 * 108.59268 * 305.61223 * 8 5 4 35 35 H 1.09001 * 109.46786 * 63.95877 * 10 9 8 36 36 H 1.09000 * 109.47158 * 183.95487 * 10 9 8 37 37 H 1.09000 * 109.47413 * 303.95869 * 10 9 8 38 38 H 0.96998 * 119.99898 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2643 2.0769 1.2742 5 6 1.2017 3.1662 1.4432 6 1 0.2601 2.8179 1.0186 7 6 1.0068 3.4528 2.9334 8 6 1.6242 4.4427 0.7411 9 7 1.6817 4.3278 -0.7108 10 6 0.3852 3.9055 -1.2572 11 6 2.7582 3.4355 -1.1603 12 1 3.0637 3.7108 -2.1698 13 6 3.9351 3.5527 -0.2264 14 1 4.3451 2.6686 0.2393 15 6 4.4886 4.7884 0.0336 16 7 5.4206 4.9112 0.9533 17 14 3.9145 6.2883 -0.9204 18 1 2.7798 6.9255 -0.2050 19 1 5.0329 7.2582 -1.0377 20 1 3.4745 5.8737 -2.2767 21 6 2.2468 2.0105 -1.1561 22 8 2.0400 1.4398 -2.2061 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.1968 1.3672 2.0989 29 1 3.2555 2.5301 1.2596 30 1 1.9489 3.7912 3.3646 31 1 0.2504 4.2278 3.0584 32 1 0.6816 2.5435 3.4388 33 1 0.9178 5.2315 0.9996 34 1 2.6101 4.7302 1.1063 35 1 -0.3616 4.6733 -1.0554 36 1 0.4748 3.7598 -2.3337 37 1 0.0805 2.9700 -0.7881 38 1 5.8097 5.7806 1.1365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250325028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:18 Heat of formation + Delta-G solvation = -30.275980 kcal Electronic energy + Delta-G solvation = -19559.871984 eV Core-core repulsion = 16823.337861 eV Total energy + Delta-G solvation = -2736.534123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.91973 -38.61878 -36.89085 -34.76764 -34.19364 -32.18889 -30.08969 -27.90774 -27.02306 -25.53911 -24.89352 -22.97348 -20.92632 -19.94171 -19.08616 -17.92443 -17.32740 -16.80438 -16.51191 -15.49685 -15.26477 -15.17992 -14.81744 -14.58999 -14.40975 -14.13409 -13.70071 -13.42457 -13.07779 -12.97372 -12.84001 -12.78046 -12.53274 -12.48680 -12.16942 -12.09457 -11.76753 -11.74627 -11.47264 -11.20845 -10.73015 -10.46890 -9.49785 -9.04087 -8.30339 -6.34492 1.50469 1.52758 1.68991 1.75231 2.25079 2.46305 2.95893 3.44488 3.75910 3.99159 4.06891 4.19201 4.28180 4.32601 4.46049 4.47135 4.58199 4.71579 4.72881 4.83174 4.87851 4.89531 4.97063 5.00658 5.16086 5.19927 5.26076 5.30976 5.36555 5.39993 5.66564 5.82042 5.98155 6.24794 6.46220 6.56125 6.61218 7.28274 7.35287 8.78191 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.011954 C = 0.010925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.456766 B = 2341.662502 C = 2562.356268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.101 3.899 3 N -0.596 5.596 4 C 0.086 3.914 5 C -0.122 4.122 6 H 0.066 0.934 7 C -0.129 4.129 8 C 0.053 3.947 9 N -0.541 5.541 10 C 0.022 3.978 11 C 0.168 3.832 12 H 0.047 0.953 13 C -0.524 4.524 14 H 0.067 0.933 15 C 0.061 3.939 16 N -0.914 5.914 17 Si 0.955 3.045 18 H -0.259 1.259 19 H -0.314 1.314 20 H -0.276 1.276 21 C 0.509 3.491 22 O -0.609 6.609 23 H 0.031 0.969 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 -3.963 4.970 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 N -0.326 5.326 4 C -0.035 4.035 5 C -0.143 4.143 6 H 0.084 0.916 7 C -0.188 4.188 8 C -0.074 4.074 9 N -0.266 5.266 10 C -0.125 4.125 11 C 0.058 3.942 12 H 0.064 0.936 13 C -0.562 4.562 14 H 0.085 0.915 15 C -0.142 4.142 16 N -0.551 5.551 17 Si 0.784 3.216 18 H -0.184 1.184 19 H -0.243 1.243 20 H -0.202 1.202 21 C 0.297 3.703 22 O -0.492 6.492 23 H 0.051 0.949 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.705 -3.705 4.365 12.140 hybrid contribution 0.080 -0.015 -0.446 0.453 sum -10.625 -3.720 3.920 11.921 Atomic orbital electron populations 1.22020 0.94660 1.02990 1.01309 1.21601 0.95508 0.82160 1.02820 1.47956 1.63789 1.14145 1.06738 1.22769 1.02853 0.94590 0.83316 1.21659 0.98153 0.96378 0.98073 0.91590 1.21641 1.01852 1.02266 0.93012 1.21797 1.03099 0.96634 0.85903 1.61828 1.04161 1.49411 1.11184 1.22409 0.91390 0.99502 0.99248 1.20100 0.91459 0.84595 0.98026 0.93559 1.20630 1.13322 0.94642 1.27576 0.91520 1.25318 0.93555 1.00962 0.94355 1.69983 1.27723 1.25866 1.31536 0.85583 0.76438 0.78919 0.80636 1.18407 1.24333 1.20166 1.21703 0.75339 0.90256 0.83020 1.90531 1.55803 1.69683 1.33154 0.94942 0.89525 0.91647 0.88387 0.92393 0.89139 0.87328 0.93051 0.91660 0.91038 0.91649 0.90012 0.89711 0.93223 0.95186 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 10.24 71.98 0.74 -3.10 16 2 C 0.10 3.07 6.13 86.38 0.53 3.60 16 3 N -0.60 -22.38 2.34 -820.47 -1.92 -24.30 16 4 C 0.09 2.99 5.24 86.27 0.45 3.44 16 5 C -0.12 -3.86 2.30 -11.19 -0.03 -3.88 16 6 H 0.07 2.03 6.20 -2.38 -0.01 2.02 16 7 C -0.13 -3.25 8.99 71.98 0.65 -2.60 16 8 C 0.05 2.03 3.64 86.09 0.31 2.35 16 9 N -0.54 -22.82 2.97 -910.41 -2.70 -25.53 16 10 C 0.02 0.81 8.39 127.69 1.07 1.88 16 11 C 0.17 8.05 2.04 43.65 0.09 8.14 16 12 H 0.05 2.47 7.36 -2.39 -0.02 2.46 16 13 C -0.52 -27.05 5.71 25.60 0.15 -26.90 16 14 H 0.07 3.72 6.29 -2.91 -0.02 3.70 16 15 C 0.06 3.22 3.94 84.65 0.33 3.56 16 16 N -0.91 -50.51 13.96 21.45 0.30 -50.22 16 17 Si 0.95 45.36 24.93 68.60 1.71 47.07 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.31 -15.04 7.11 99.48 0.71 -14.34 16 20 H -0.28 -13.51 6.66 99.48 0.66 -12.85 16 21 C 0.51 23.22 4.47 88.06 0.39 23.61 16 22 O -0.61 -30.83 16.63 -3.04 -0.05 -30.88 16 23 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.50 8.11 -2.39 -0.02 1.48 16 26 H 0.10 2.38 7.88 -2.38 -0.02 2.37 16 27 H 0.06 1.98 7.40 -2.38 -0.02 1.96 16 28 H 0.09 2.57 7.53 -2.39 -0.02 2.55 16 29 H 0.11 4.73 3.81 -2.39 -0.01 4.72 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 33 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 34 H 0.08 3.64 4.50 -2.39 -0.01 3.63 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 37 H 0.03 1.08 5.18 -2.39 -0.01 1.06 16 38 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -61.87 280.35 3.02 -58.85 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.99 Total: 14.90 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.69 Total: 10.09 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -4.32 Total: -100.04 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.71 Total: 47.07 kcal Total: -61.87 3.02 -58.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250325028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.573 kcal (2) G-P(sol) polarization free energy of solvation -61.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds