Wall clock time and date at job start Mon Mar 30 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46108 * 109.47133 * 2 1 4 4 C 1.44522 * 113.54019 * 36.32925 * 3 2 1 5 5 C 1.50894 * 116.66094 * 62.35143 * 4 3 2 6 6 C 1.52820 * 113.53977 * 62.35427 * 5 4 3 7 7 H 1.10831 * 107.32709 * 169.18851 * 6 5 4 8 8 C 1.51896 * 112.67489 * 50.70932 * 6 5 4 9 9 N 1.47193 * 109.23999 * 284.92520 * 6 5 4 10 10 C 1.47049 * 119.06031 * 253.31502 * 9 6 5 11 11 C 1.33645 * 122.13603 * 73.39630 * 9 6 5 12 12 O 1.22455 * 117.23774 * 162.88517 * 11 9 6 13 13 C 1.46007 * 113.01936 * 170.00178 * 3 2 1 14 14 H 1.08972 * 110.33657 * 185.12987 * 13 3 2 15 15 C 1.51497 * 108.92677 * 66.95482 * 13 3 2 16 16 H 1.07999 * 120.00203 * 0.03850 * 15 13 3 17 17 C 1.37880 * 120.00201 * 180.31209 * 15 13 3 18 18 N 1.31515 * 119.99577 * 359.72849 * 17 15 13 19 19 Si 1.86799 * 120.00098 * 179.72588 * 17 15 13 20 20 H 1.48497 * 109.47106 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46803 * 120.00567 * 19 17 15 22 22 H 1.48502 * 109.47214 * 240.00058 * 19 17 15 23 23 H 1.08997 * 109.47194 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47138 * 299.99817 * 1 2 3 25 25 H 1.08996 * 109.47565 * 59.99822 * 1 2 3 26 26 H 1.09003 * 109.46683 * 240.00246 * 2 1 3 27 27 H 1.08998 * 109.47115 * 119.99900 * 2 1 3 28 28 H 1.10299 * 107.51186 * 301.83605 * 4 3 2 29 29 H 1.09148 * 109.33113 * 187.51610 * 4 3 2 30 30 H 1.09254 * 109.90228 * 299.82288 * 5 4 3 31 31 H 1.09843 * 108.60065 * 182.85573 * 5 4 3 32 32 H 1.09001 * 109.46919 * 302.98352 * 8 6 5 33 33 H 1.08999 * 109.46874 * 62.98517 * 8 6 5 34 34 H 1.09003 * 109.46718 * 182.98570 * 8 6 5 35 35 H 1.08997 * 109.46949 * 180.02562 * 10 9 6 36 36 H 1.09002 * 109.46784 * 300.07639 * 10 9 6 37 37 H 1.08994 * 109.47072 * 60.07672 * 10 9 6 38 38 H 0.97000 * 120.00065 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0170 1.3775 0.0000 4 6 1.2031 2.2775 0.7849 5 6 1.1078 1.9895 2.2631 6 6 2.4496 2.0763 2.9895 7 1 2.2387 2.0457 4.0771 8 6 3.1910 3.3694 2.6973 9 7 3.2513 0.8836 2.6715 10 6 3.4271 -0.1536 3.6989 11 6 3.8277 0.7119 1.4780 12 8 4.7201 -0.1231 1.4015 13 6 3.4551 1.4747 0.2333 14 1 3.7558 2.5189 0.3147 15 6 4.1865 0.8723 -0.9488 16 1 3.6282 0.4648 -1.7786 17 6 5.5648 0.8391 -0.9626 18 7 6.2446 1.3353 0.0480 19 14 6.4665 0.0894 -2.4167 20 1 5.4795 -0.3943 -3.4152 21 1 7.3390 1.1162 -3.0408 22 1 7.2978 -1.0492 -1.9500 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 0.1791 2.2406 0.3765 29 1 1.5461 3.3022 0.6310 30 1 0.6784 0.9975 2.4218 31 1 0.4220 2.7168 2.7183 32 1 3.3384 3.4687 1.6218 33 1 2.6071 4.2138 3.0635 34 1 4.1597 3.3535 3.1968 35 1 4.0430 -0.9595 3.2999 36 1 3.9149 0.2792 4.5723 37 1 2.4530 -0.5497 3.9857 38 1 7.2143 1.3117 0.0385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250337674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:06 Heat of formation + Delta-G solvation = -32.766641 kcal Electronic energy + Delta-G solvation = -19390.648673 eV Core-core repulsion = 16654.006547 eV Total energy + Delta-G solvation = -2736.642126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30021 -38.16661 -36.89977 -34.50440 -33.06626 -31.85106 -30.29757 -27.86489 -27.58032 -25.60739 -24.53062 -23.20903 -20.30743 -19.55208 -18.35414 -17.82329 -16.96821 -16.59519 -16.24588 -15.87556 -15.50471 -15.25485 -14.76381 -14.43224 -14.03406 -13.74062 -13.45192 -13.26112 -13.04443 -12.89211 -12.76602 -12.69983 -12.50288 -12.43019 -12.21966 -12.01838 -11.78522 -11.64036 -11.31976 -10.97322 -10.46019 -10.24386 -9.29579 -8.66870 -8.07245 -6.13415 1.37119 1.40831 1.51048 2.22552 2.37107 2.51343 3.32694 3.38906 3.82364 3.98980 4.14769 4.30715 4.30969 4.44077 4.50156 4.64765 4.67148 4.70539 4.71813 4.78661 4.93039 4.93165 5.00958 5.03323 5.11716 5.13541 5.26443 5.33129 5.47263 5.53370 5.74283 5.95483 6.06289 6.47199 6.72787 6.95170 7.10528 7.55382 7.93891 9.02291 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.011062 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.448817 B = 2530.619494 C = 2961.569848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 N -0.559 5.559 4 C 0.061 3.939 5 C -0.155 4.155 6 C 0.139 3.861 7 H 0.100 0.900 8 C -0.161 4.161 9 N -0.637 5.637 10 C 0.087 3.913 11 C 0.490 3.510 12 O -0.567 6.567 13 C 0.236 3.764 14 H 0.046 0.954 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.033 3.967 18 N -0.895 5.895 19 Si 0.952 3.048 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.295 1.295 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.001 0.999 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 3.049 6.946 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 N -0.284 5.284 4 C -0.067 4.067 5 C -0.196 4.196 6 C 0.036 3.964 7 H 0.118 0.882 8 C -0.219 4.219 9 N -0.374 5.374 10 C -0.056 4.056 11 C 0.278 3.722 12 O -0.443 6.443 13 C 0.125 3.875 14 H 0.064 0.936 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.169 4.169 18 N -0.532 5.532 19 Si 0.779 3.221 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.221 1.221 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.019 0.981 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.783 2.783 6.556 14.633 hybrid contribution 1.473 -0.878 0.141 1.721 sum -11.310 1.905 6.697 13.281 Atomic orbital electron populations 1.21935 0.92488 1.02416 1.03004 1.21492 0.96336 0.88499 0.98197 1.58265 1.02650 1.09197 1.58261 1.21368 0.98493 0.95913 0.90898 1.22256 0.96434 1.03702 0.97160 1.21302 0.90251 0.84155 1.00660 0.88186 1.21962 1.00229 0.97588 1.02075 1.48393 1.54026 1.22155 1.12865 1.21607 1.01377 0.91774 0.90837 1.23072 0.79960 0.83844 0.85343 1.90803 1.29343 1.37757 1.86363 1.19068 0.83951 0.95469 0.88978 0.93641 1.21206 0.90975 1.41084 1.03048 0.92701 1.25560 0.98454 0.95118 0.97801 1.70071 1.06265 1.45579 1.31322 0.85604 0.78613 0.78047 0.79855 1.18844 1.19921 1.22149 0.91605 0.90787 0.91456 0.93996 0.98090 0.89361 0.91620 0.91799 0.87071 0.93704 0.87721 0.94355 0.93509 0.92078 0.90734 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.71 71.98 0.63 -3.16 16 2 C 0.08 3.21 5.14 86.45 0.44 3.66 16 3 N -0.56 -23.01 4.11 -891.09 -3.66 -26.67 16 4 C 0.06 1.84 4.14 86.06 0.36 2.20 16 5 C -0.16 -3.85 4.81 29.85 0.14 -3.71 16 6 C 0.14 4.11 2.77 44.44 0.12 4.24 16 7 H 0.10 2.31 7.94 -1.40 -0.01 2.30 16 8 C -0.16 -4.94 8.79 71.62 0.63 -4.31 16 9 N -0.64 -25.60 2.74 -819.71 -2.25 -27.85 16 10 C 0.09 3.03 10.38 127.66 1.33 4.36 16 11 C 0.49 25.32 4.44 87.82 0.39 25.71 16 12 O -0.57 -35.24 12.77 -6.82 -0.09 -35.33 16 13 C 0.24 12.13 1.74 43.83 0.08 12.20 16 14 H 0.05 2.53 5.79 -2.40 -0.01 2.52 16 15 C -0.52 -30.91 7.81 25.85 0.20 -30.70 16 16 H 0.05 3.24 7.21 -2.91 -0.02 3.22 16 17 C 0.03 1.97 4.62 84.66 0.39 2.36 16 18 N -0.90 -56.52 11.32 21.45 0.24 -56.28 16 19 Si 0.95 48.04 29.54 68.60 2.03 50.06 16 20 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 24 H 0.07 1.69 5.12 -2.39 -0.01 1.68 16 25 H 0.07 1.71 8.07 -2.39 -0.02 1.70 16 26 H 0.04 1.86 7.30 -2.39 -0.02 1.84 16 27 H 0.00 0.04 6.62 -2.39 -0.02 0.02 16 28 H 0.09 2.19 6.31 -1.69 -0.01 2.18 16 29 H 0.07 1.98 7.05 -2.31 -0.02 1.97 16 30 H 0.06 1.61 6.58 -2.25 -0.01 1.59 16 31 H 0.11 1.83 8.21 -1.94 -0.02 1.82 16 32 H 0.04 1.67 4.15 -2.39 -0.01 1.66 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.96 6.78 -2.39 -0.02 1.94 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.25 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.12 281.31 2.04 -74.07 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.06 Total: 9.15 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 4.71 Total: 12.84 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -5.66 Total: -110.79 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.09 Total: -35.33 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -76.12 2.04 -74.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250337674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.308 kcal (2) G-P(sol) polarization free energy of solvation -76.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds