Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46922 * 2 1 4 4 C 1.50701 * 109.47008 * 239.99822 * 2 1 3 5 5 O 1.21276 * 119.99844 * 239.99623 * 4 2 1 6 6 N 1.34777 * 119.99759 * 60.00165 * 4 2 1 7 7 C 1.46502 * 119.99720 * 179.97438 * 6 4 2 8 8 C 1.53010 * 117.49677 * 223.62126 * 7 6 4 9 9 C 1.52999 * 117.49852 * 155.00024 * 7 6 4 10 10 N 1.46896 * 109.47006 * 120.00153 * 2 1 3 11 11 C 1.46899 * 111.00073 * 313.94405 * 10 2 1 12 12 C 1.46901 * 111.00024 * 189.99607 * 10 2 1 13 13 H 1.08999 * 109.46708 * 314.10106 * 12 10 2 14 14 C 1.53000 * 109.47052 * 74.09982 * 12 10 2 15 15 C 1.50692 * 109.47229 * 194.10222 * 12 10 2 16 16 H 1.07999 * 120.00087 * 359.97438 * 15 12 10 17 17 C 1.37884 * 120.00081 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99814 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00122 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47142 * 59.99615 * 19 17 15 21 21 H 1.48499 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47206 * 299.99968 * 19 17 15 23 23 H 1.08997 * 109.47272 * 307.04226 * 1 2 3 24 24 H 1.09001 * 109.47175 * 67.04813 * 1 2 3 25 25 H 1.09005 * 109.47155 * 187.04355 * 1 2 3 26 26 H 0.97005 * 120.00289 * 359.97438 * 6 4 2 27 27 H 1.08993 * 115.55159 * 9.32359 * 7 6 4 28 28 H 1.08999 * 117.49693 * 0.02562 * 8 7 6 29 29 H 1.08996 * 117.49730 * 145.02181 * 8 7 6 30 30 H 1.09004 * 117.49983 * 214.97560 * 9 7 6 31 31 H 1.08997 * 117.50014 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.47407 * 296.05279 * 11 10 2 33 33 H 1.09008 * 109.46819 * 56.05178 * 11 10 2 34 34 H 1.08995 * 109.47604 * 176.04727 * 11 10 2 35 35 H 1.09000 * 109.46791 * 187.29237 * 14 12 10 36 36 H 1.09006 * 109.47131 * 307.28825 * 14 12 10 37 37 H 1.08997 * 109.47615 * 67.29352 * 14 12 10 38 38 H 0.96998 * 119.99557 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6507 8 6 2.7322 -0.0774 -4.7946 9 6 1.3830 -0.7847 -4.9378 10 7 2.0197 -0.6925 1.1994 11 6 1.2979 -0.2442 2.3977 12 6 3.4685 -0.5094 1.3584 13 1 3.9630 -0.6769 0.4016 14 6 3.7530 0.9156 1.8371 15 6 3.9909 -1.4938 2.3728 16 1 3.3142 -2.1859 2.8519 17 6 5.3328 -1.5109 2.6894 18 7 6.1569 -0.6684 2.1057 19 14 5.9802 -2.7305 3.9474 20 1 5.7033 -4.1139 3.4837 21 1 7.4451 -2.5464 4.1071 22 1 5.3070 -2.5015 5.2510 23 1 -0.3633 0.6190 0.8202 24 1 -0.3633 0.4007 -0.9463 25 1 -0.3634 -1.0200 0.1260 26 1 1.1488 0.5385 -2.5436 27 1 2.6799 -1.9006 -3.4743 28 1 2.7220 1.0038 -4.6570 29 1 3.5699 -0.4701 -5.3710 30 1 1.3331 -1.6426 -5.6084 31 1 0.4846 -0.1690 -4.8945 32 1 1.4998 0.8132 2.5692 33 1 0.2274 -0.3909 2.2532 34 1 1.6306 -0.8221 3.2598 35 1 4.8285 1.0930 1.8311 36 1 3.2638 1.6269 1.1715 37 1 3.3695 1.0423 2.8495 38 1 7.1009 -0.6807 2.3281 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251516382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = 5.410076 kcal Electronic energy + Delta-G solvation = -18061.362922 eV Core-core repulsion = 15326.376263 eV Total energy + Delta-G solvation = -2734.986660 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65505 -37.51092 -36.19409 -33.30213 -32.39003 -30.47702 -27.91401 -25.91530 -25.10398 -23.17120 -22.43237 -21.38432 -20.26767 -18.92532 -16.67879 -16.38227 -16.05571 -15.36150 -14.57382 -14.52469 -14.11188 -13.73246 -13.36905 -12.74279 -12.63530 -12.20397 -11.99018 -11.86263 -11.65912 -11.54013 -11.25303 -11.12623 -10.85001 -10.70965 -10.53171 -10.50563 -10.31361 -9.95864 -9.71323 -9.13686 -8.73194 -8.48826 -8.20955 -7.08631 -5.86761 -3.87264 3.13714 3.31612 3.42118 3.45516 3.49745 3.96090 4.52544 4.79284 4.95331 4.96400 4.99000 5.13938 5.41648 5.45856 5.53515 5.58569 5.77902 5.80306 5.97197 6.00807 6.09257 6.17718 6.31866 6.40374 6.68503 6.76080 6.80897 6.93356 7.18781 7.48803 7.73748 7.82333 7.97693 8.31664 8.45299 8.68020 8.82514 9.16453 9.75273 11.21778 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.006810 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.279532 B = 4110.427876 C = 4675.990896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.059 0.941 4 C 0.519 3.481 5 O -0.493 6.493 6 N -0.715 5.715 7 C 0.090 3.910 8 C -0.198 4.198 9 C -0.194 4.194 10 N -0.514 5.514 11 C 0.032 3.968 12 C 0.208 3.792 13 H 0.052 0.948 14 C -0.169 4.169 15 C -0.486 4.486 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.279 1.279 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.395 0.605 27 H 0.137 0.863 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.002 0.998 37 H 0.034 0.966 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 4.557 -9.864 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 H 0.077 0.923 4 C 0.305 3.695 5 O -0.364 6.364 6 N -0.368 5.368 7 C -0.017 4.017 8 C -0.237 4.237 9 C -0.233 4.233 10 N -0.238 5.238 11 C -0.116 4.116 12 C 0.103 3.897 13 H 0.070 0.930 14 C -0.228 4.228 15 C -0.525 4.525 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.205 1.205 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.154 0.846 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.020 0.980 37 H 0.053 0.947 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.430 3.333 -9.775 14.678 hybrid contribution 0.384 0.794 0.603 1.068 sum -10.046 4.126 -9.172 14.215 Atomic orbital electron populations 1.21890 0.93570 1.03114 1.01412 1.21477 0.95493 0.96366 0.91761 0.92324 1.20756 0.80053 0.85006 0.83733 1.90756 1.34817 1.24992 1.85841 1.45477 1.54605 1.31953 1.04755 1.21505 1.01137 0.98433 0.80578 1.23401 0.97354 0.99519 1.03397 1.23346 0.95389 1.03626 1.00913 1.62223 1.07874 1.54459 0.99284 1.22328 0.96767 0.98170 0.94371 1.19419 0.80483 0.91587 0.98249 0.93009 1.22424 1.03886 0.98611 0.97876 1.20989 0.92749 1.17009 1.21783 0.92189 1.24905 0.96858 0.95975 0.96712 1.69898 1.03646 1.37048 1.43274 0.86587 0.77414 0.81894 0.81614 1.20300 1.21536 1.20490 0.91585 0.92792 0.91302 0.77128 0.84582 0.88703 0.88229 0.88212 0.88783 0.96300 0.93304 0.90782 0.89763 0.97954 0.94740 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.12 37.16 0.30 -1.62 16 2 C 0.06 1.12 2.45 -68.86 -0.17 0.95 16 3 H 0.06 1.05 6.44 -51.93 -0.33 0.72 16 4 C 0.52 9.94 6.74 -10.98 -0.07 9.87 16 5 O -0.49 -12.05 14.36 5.56 0.08 -11.97 16 6 N -0.71 -10.18 5.41 -53.80 -0.29 -10.47 16 7 C 0.09 1.20 6.43 -67.92 -0.44 0.76 16 8 C -0.20 -2.11 10.46 -26.72 -0.28 -2.39 16 9 C -0.19 -1.87 10.45 -26.73 -0.28 -2.15 16 10 N -0.51 -11.47 4.23 -229.69 -0.97 -12.44 16 11 C 0.03 0.62 8.09 60.06 0.49 1.10 16 12 C 0.21 5.53 1.91 -68.87 -0.13 5.39 16 13 H 0.05 1.57 6.18 -51.93 -0.32 1.25 16 14 C -0.17 -4.19 7.84 37.16 0.29 -3.90 16 15 C -0.49 -14.12 8.01 -34.44 -0.28 -14.39 16 16 H 0.06 1.75 7.38 -52.49 -0.39 1.36 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.90 -26.90 11.41 55.43 0.63 -26.27 16 19 Si 0.90 22.47 29.54 -169.99 -5.02 17.44 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H 0.07 0.81 6.72 -51.93 -0.35 0.46 16 24 H 0.05 0.56 7.37 -51.93 -0.38 0.18 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.39 4.32 8.17 -40.82 -0.33 3.99 16 27 H 0.14 2.10 7.40 -51.93 -0.38 1.72 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.35 6.35 -51.93 -0.33 0.02 16 33 H 0.05 0.78 6.09 -51.92 -0.32 0.47 16 34 H 0.07 1.55 7.15 -51.93 -0.37 1.18 16 35 H 0.08 2.31 6.30 -51.93 -0.33 1.99 16 36 H 0.00 0.03 6.51 -51.93 -0.34 -0.30 16 37 H 0.03 0.83 6.78 -51.93 -0.35 0.47 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -33.29 299.93 -7.49 -40.78 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.78 Total: 3.27 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.66 Total: -4.85 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.63 Total: -49.18 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.29 -7.49 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251516382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.188 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds