Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46922 * 2 1 4 4 C 1.50701 * 109.47008 * 239.99822 * 2 1 3 5 5 O 1.21276 * 119.99844 * 239.99623 * 4 2 1 6 6 N 1.34777 * 119.99759 * 60.00165 * 4 2 1 7 7 C 1.46502 * 119.99720 * 179.97438 * 6 4 2 8 8 C 1.53010 * 117.49677 * 223.62126 * 7 6 4 9 9 C 1.52999 * 117.49852 * 155.00024 * 7 6 4 10 10 N 1.46896 * 109.47006 * 120.00153 * 2 1 3 11 11 C 1.46899 * 111.00073 * 313.94405 * 10 2 1 12 12 C 1.46901 * 111.00024 * 189.99607 * 10 2 1 13 13 H 1.08999 * 109.46708 * 314.10106 * 12 10 2 14 14 C 1.53000 * 109.47052 * 74.09982 * 12 10 2 15 15 C 1.50692 * 109.47229 * 194.10222 * 12 10 2 16 16 H 1.07999 * 120.00087 * 359.97438 * 15 12 10 17 17 C 1.37884 * 120.00081 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99814 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00122 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47142 * 59.99615 * 19 17 15 21 21 H 1.48499 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47206 * 299.99968 * 19 17 15 23 23 H 1.08997 * 109.47272 * 307.04226 * 1 2 3 24 24 H 1.09001 * 109.47175 * 67.04813 * 1 2 3 25 25 H 1.09005 * 109.47155 * 187.04355 * 1 2 3 26 26 H 0.97005 * 120.00289 * 359.97438 * 6 4 2 27 27 H 1.08993 * 115.55159 * 9.32359 * 7 6 4 28 28 H 1.08999 * 117.49693 * 0.02562 * 8 7 6 29 29 H 1.08996 * 117.49730 * 145.02181 * 8 7 6 30 30 H 1.09004 * 117.49983 * 214.97560 * 9 7 6 31 31 H 1.08997 * 117.50014 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.47407 * 296.05279 * 11 10 2 33 33 H 1.09008 * 109.46819 * 56.05178 * 11 10 2 34 34 H 1.08995 * 109.47604 * 176.04727 * 11 10 2 35 35 H 1.09000 * 109.46791 * 187.29237 * 14 12 10 36 36 H 1.09006 * 109.47131 * 307.28825 * 14 12 10 37 37 H 1.08997 * 109.47615 * 67.29352 * 14 12 10 38 38 H 0.96998 * 119.99557 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6507 8 6 2.7322 -0.0774 -4.7946 9 6 1.3830 -0.7847 -4.9378 10 7 2.0197 -0.6925 1.1994 11 6 1.2979 -0.2442 2.3977 12 6 3.4685 -0.5094 1.3584 13 1 3.9630 -0.6769 0.4016 14 6 3.7530 0.9156 1.8371 15 6 3.9909 -1.4938 2.3728 16 1 3.3142 -2.1859 2.8519 17 6 5.3328 -1.5109 2.6894 18 7 6.1569 -0.6684 2.1057 19 14 5.9802 -2.7305 3.9474 20 1 5.7033 -4.1139 3.4837 21 1 7.4451 -2.5464 4.1071 22 1 5.3070 -2.5015 5.2510 23 1 -0.3633 0.6190 0.8202 24 1 -0.3633 0.4007 -0.9463 25 1 -0.3634 -1.0200 0.1260 26 1 1.1488 0.5385 -2.5436 27 1 2.6799 -1.9006 -3.4743 28 1 2.7220 1.0038 -4.6570 29 1 3.5699 -0.4701 -5.3710 30 1 1.3331 -1.6426 -5.6084 31 1 0.4846 -0.1690 -4.8945 32 1 1.4998 0.8132 2.5692 33 1 0.2274 -0.3909 2.2532 34 1 1.6306 -0.8221 3.2598 35 1 4.8285 1.0930 1.8311 36 1 3.2638 1.6269 1.1715 37 1 3.3695 1.0423 2.8495 38 1 7.1009 -0.6807 2.3281 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251516382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = -19.479196 kcal Electronic energy + Delta-G solvation = -18062.442202 eV Core-core repulsion = 15326.376263 eV Total energy + Delta-G solvation = -2736.065939 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09425 -38.87593 -37.62112 -35.15134 -33.91791 -32.10603 -29.63520 -27.41161 -27.27618 -24.55898 -23.24222 -22.78287 -21.78408 -20.53147 -18.25293 -18.07169 -17.55391 -17.05644 -16.23886 -15.96407 -15.47184 -15.21487 -15.02728 -14.37224 -13.96268 -13.74237 -13.48240 -13.32889 -13.17402 -13.02160 -12.63150 -12.53039 -12.44081 -12.31883 -12.26619 -12.08316 -12.05414 -11.61843 -11.43109 -10.94570 -10.61415 -10.37861 -9.64847 -8.78839 -8.07862 -6.16215 1.39243 1.43389 1.50188 1.73093 2.11357 2.44335 3.02514 3.21555 3.41398 3.80289 3.90539 4.09744 4.10639 4.13094 4.26586 4.53663 4.75364 4.77102 4.77718 4.82470 4.88044 4.89042 4.96625 5.04787 5.11931 5.17037 5.22987 5.30335 5.55259 5.63062 5.74144 5.78909 6.27227 6.55589 6.57365 6.81774 6.95387 7.44463 7.51033 8.99175 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.006810 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.279532 B = 4110.427876 C = 4675.990896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.065 0.935 4 C 0.512 3.488 5 O -0.562 6.562 6 N -0.692 5.692 7 C 0.045 3.955 8 C -0.189 4.189 9 C -0.158 4.158 10 N -0.536 5.536 11 C 0.036 3.964 12 C 0.217 3.783 13 H 0.006 0.994 14 C -0.152 4.152 15 C -0.506 4.506 16 H 0.050 0.950 17 C 0.005 3.995 18 N -0.926 5.926 19 Si 0.960 3.040 20 H -0.280 1.280 21 H -0.283 1.283 22 H -0.265 1.265 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.414 0.586 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.234 5.717 -10.586 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 H 0.083 0.917 4 C 0.299 3.701 5 O -0.438 6.438 6 N -0.345 5.345 7 C -0.062 4.062 8 C -0.228 4.228 9 C -0.196 4.196 10 N -0.261 5.261 11 C -0.112 4.112 12 C 0.110 3.890 13 H 0.024 0.976 14 C -0.212 4.212 15 C -0.545 4.545 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.190 1.190 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.252 0.748 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.647 4.541 -10.536 17.075 hybrid contribution 1.011 0.450 0.704 1.312 sum -11.635 4.991 -9.832 16.030 Atomic orbital electron populations 1.21885 0.89504 1.03285 1.04345 1.21646 0.98562 0.95617 0.89514 0.91724 1.21100 0.79254 0.84312 0.85421 1.90727 1.38045 1.28133 1.86896 1.45198 1.53614 1.31969 1.03722 1.21553 1.04864 0.98251 0.81486 1.23485 0.98535 0.99783 1.00960 1.23445 0.95473 1.03685 0.96991 1.61987 1.05767 1.56487 1.01831 1.22340 0.98487 0.97955 0.92426 1.19037 0.83122 0.91744 0.95113 0.97592 1.22177 1.01996 0.98416 0.98564 1.21314 0.93157 1.17589 1.22423 0.93202 1.25720 0.97123 0.97740 0.98662 1.70039 1.03763 1.38372 1.44441 0.85594 0.77062 0.79203 0.79626 1.20540 1.20804 1.19027 0.89629 0.89135 0.92249 0.74831 0.87987 0.87607 0.87837 0.86870 0.86450 0.95557 0.89491 0.93146 0.92836 0.95322 0.94409 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.12 71.98 0.58 -2.56 16 2 C 0.06 2.07 2.45 44.17 0.11 2.18 16 3 H 0.07 2.20 6.44 -2.39 -0.02 2.18 16 4 C 0.51 19.88 6.74 87.66 0.59 20.47 16 5 O -0.56 -29.04 14.36 -3.02 -0.04 -29.08 16 6 N -0.69 -18.99 5.41 -442.52 -2.39 -21.38 16 7 C 0.04 1.17 6.43 44.99 0.29 1.46 16 8 C -0.19 -3.66 10.46 30.60 0.32 -3.34 16 9 C -0.16 -2.57 10.45 30.60 0.32 -2.25 16 10 N -0.54 -24.06 4.23 -880.59 -3.72 -27.78 16 11 C 0.04 1.33 8.09 127.69 1.03 2.36 16 12 C 0.22 11.87 1.91 44.17 0.08 11.95 16 13 H 0.01 0.39 6.18 -2.39 -0.01 0.38 16 14 C -0.15 -7.64 7.84 71.98 0.56 -7.08 16 15 C -0.51 -30.32 8.01 25.60 0.21 -30.12 16 16 H 0.05 3.00 7.38 -2.91 -0.02 2.98 16 17 C 0.00 0.30 5.30 84.66 0.45 0.74 16 18 N -0.93 -57.10 11.41 21.45 0.24 -56.85 16 19 Si 0.96 46.99 29.54 68.60 2.03 49.02 16 20 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H 0.08 1.72 6.72 -2.39 -0.02 1.70 16 24 H 0.09 1.48 7.37 -2.39 -0.02 1.47 16 25 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.41 7.86 8.17 -92.70 -0.76 7.10 16 27 H 0.10 3.38 7.40 -2.39 -0.02 3.36 16 28 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.03 0.93 6.35 -2.38 -0.02 0.92 16 33 H 0.09 2.56 6.09 -2.38 -0.01 2.54 16 34 H 0.05 2.10 7.15 -2.39 -0.02 2.08 16 35 H 0.05 3.01 6.30 -2.39 -0.02 2.99 16 36 H 0.03 1.23 6.51 -2.38 -0.02 1.22 16 37 H 0.04 1.81 6.78 -2.39 -0.02 1.80 16 38 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.18 299.93 0.96 -76.23 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.30 Total: 16.04 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 4.55 Total: -6.19 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -5.87 Total: -106.02 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.04 Total: -29.08 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -77.18 0.96 -76.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251516382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.748 kcal (2) G-P(sol) polarization free energy of solvation -77.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds