Wall clock time and date at job start Mon Mar 30 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47219 * 2 1 4 4 C 1.50703 * 109.47096 * 239.99774 * 2 1 3 5 5 H 1.08001 * 120.00147 * 245.16586 * 4 2 1 6 6 C 1.37887 * 119.99816 * 65.16261 * 4 2 1 7 7 N 1.31509 * 119.99975 * 201.39436 * 6 4 2 8 8 Si 1.86800 * 119.99847 * 21.39312 * 6 4 2 9 9 H 1.48494 * 109.46913 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47317 * 300.00066 * 8 6 4 11 11 H 1.48502 * 109.46993 * 59.99932 * 8 6 4 12 12 N 1.46899 * 109.47180 * 120.00271 * 2 1 3 13 13 C 1.46900 * 111.00385 * 58.95244 * 12 2 1 14 14 C 1.46899 * 110.99634 * 294.99608 * 12 2 1 15 15 H 1.08998 * 109.47020 * 67.96044 * 14 12 2 16 16 C 1.53001 * 109.47384 * 307.95950 * 14 12 2 17 17 C 1.50705 * 109.46935 * 187.95926 * 14 12 2 18 18 O 1.21276 * 120.00304 * 26.30091 * 17 14 12 19 19 N 1.34784 * 119.99701 * 206.30065 * 17 14 12 20 20 C 1.46498 * 119.99530 * 179.97438 * 19 17 14 21 21 C 1.52995 * 117.49780 * 223.74438 * 20 19 17 22 22 C 1.53008 * 117.49630 * 155.08922 * 20 19 17 23 23 H 1.08998 * 109.46814 * 176.51270 * 1 2 3 24 24 H 1.08998 * 109.46850 * 296.50984 * 1 2 3 25 25 H 1.08995 * 109.46798 * 56.51035 * 1 2 3 26 26 H 0.97006 * 119.99922 * 354.90296 * 7 6 4 27 27 H 1.08994 * 109.47290 * 60.01195 * 13 12 2 28 28 H 1.08998 * 109.47012 * 180.02562 * 13 12 2 29 29 H 1.09001 * 109.46682 * 300.01602 * 13 12 2 30 30 H 1.09004 * 109.46828 * 299.99686 * 16 14 12 31 31 H 1.08993 * 109.47181 * 60.00130 * 16 14 12 32 32 H 1.09000 * 109.46789 * 179.97438 * 16 14 12 33 33 H 0.96996 * 120.00359 * 0.02562 * 19 17 14 34 34 H 1.08998 * 115.55453 * 9.42232 * 20 19 17 35 35 H 1.09001 * 117.50091 * 0.02562 * 21 20 19 36 36 H 1.09004 * 117.50115 * 145.02538 * 21 20 19 37 37 H 1.08995 * 117.49593 * 214.98800 * 22 20 19 38 38 H 1.08998 * 117.49476 * 359.97425 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.5827 -1.6347 -1.1336 6 6 1.7893 -0.1806 -2.4800 7 7 1.8339 -0.9544 -3.5424 8 14 1.3964 1.6364 -2.6637 9 1 1.1779 1.9530 -4.0980 10 1 0.1687 1.9578 -1.8927 11 1 2.5310 2.4429 -2.1465 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0762 1.2460 14 6 1.6488 0.0392 2.4180 15 1 0.5681 -0.0039 2.5528 16 6 2.0891 1.4989 2.2904 17 6 2.3289 -0.5885 3.6074 18 8 3.3695 -1.1940 3.4613 19 7 1.7806 -0.4769 4.8336 20 6 2.4415 -1.0876 5.9897 21 6 1.5627 -1.8449 6.9872 22 6 2.1548 -0.4854 7.3668 23 1 -0.3633 -1.0258 -0.0625 24 1 -0.3633 0.4587 0.9196 25 1 -0.3633 0.5670 -0.8570 26 1 2.1099 -1.8804 -3.4567 27 1 1.8764 -2.6152 0.3649 28 1 1.9054 -2.5655 2.1440 29 1 0.4385 -2.0742 1.2637 30 1 3.1699 1.5419 2.1556 31 1 1.5972 1.9529 1.4302 32 1 1.8134 2.0418 3.1944 33 1 0.9482 0.0070 4.9505 34 1 3.4444 -1.4738 5.8082 35 1 0.4928 -1.8891 6.7830 36 1 1.9876 -2.7292 7.4622 37 1 2.9692 -0.4757 8.0912 38 1 1.4750 0.3653 7.4124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251516384.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:03 Heat of formation + Delta-G solvation = -21.923298 kcal Electronic energy + Delta-G solvation = -17956.966858 eV Core-core repulsion = 15220.794935 eV Total energy + Delta-G solvation = -2736.171924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21473 -39.08106 -37.78353 -34.93621 -33.94357 -32.19596 -31.08265 -26.94114 -26.11375 -25.61680 -23.26270 -22.78504 -21.75099 -20.39536 -19.34205 -18.35325 -17.57108 -16.91785 -16.16041 -15.96270 -15.40521 -15.30822 -15.21381 -14.77602 -14.18278 -13.87997 -13.65755 -13.33915 -13.27545 -13.11580 -12.90959 -12.54551 -12.42200 -12.40348 -12.29299 -12.09546 -11.69296 -11.59877 -11.45895 -11.03327 -10.69856 -10.24023 -9.73058 -8.96178 -8.71710 -6.27029 1.46957 1.56380 1.58192 1.75016 2.01544 2.52960 2.99567 3.10498 3.21078 3.72222 3.83338 4.06176 4.08050 4.11277 4.14683 4.32207 4.50268 4.59321 4.70533 4.74257 4.76028 4.76775 4.82615 4.91996 5.01021 5.04511 5.20540 5.21713 5.22299 5.52394 5.53918 5.81728 6.08932 6.25433 6.41127 6.64769 6.76331 7.28983 7.49307 8.67623 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046681 B = 0.005720 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.671250 B = 4893.516415 C = 5127.246578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.188 3.812 3 H 0.049 0.951 4 C -0.592 4.592 5 H 0.015 0.985 6 C -0.021 4.021 7 N -0.938 5.938 8 Si 1.082 2.918 9 H -0.292 1.292 10 H -0.235 1.235 11 H -0.265 1.265 12 N -0.531 5.531 13 C 0.049 3.951 14 C 0.061 3.939 15 H 0.079 0.921 16 C -0.141 4.141 17 C 0.524 3.476 18 O -0.567 6.567 19 N -0.690 5.690 20 C 0.047 3.953 21 C -0.185 4.185 22 C -0.165 4.165 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.248 0.752 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.416 0.584 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 6.120 21.937 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.081 3.919 3 H 0.066 0.934 4 C -0.630 4.630 5 H 0.034 0.966 6 C -0.219 4.219 7 N -0.574 5.574 8 Si 0.902 3.098 9 H -0.218 1.218 10 H -0.159 1.159 11 H -0.190 1.190 12 N -0.255 5.255 13 C -0.099 4.099 14 C -0.051 4.051 15 H 0.097 0.903 16 C -0.198 4.198 17 C 0.310 3.690 18 O -0.444 6.444 19 N -0.342 5.342 20 C -0.059 4.059 21 C -0.224 4.224 22 C -0.203 4.203 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.253 0.747 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.079 6.808 20.707 22.381 hybrid contribution -0.275 -1.910 0.552 2.007 sum -5.354 4.898 21.258 22.463 Atomic orbital electron populations 1.22690 0.99288 1.00719 1.01090 1.19578 0.90490 0.94853 0.87015 0.93386 1.22120 1.38864 1.09168 0.92880 0.96626 1.27199 0.93942 1.09006 0.91745 1.71011 1.45183 1.07694 1.33529 0.83632 0.79180 0.70468 0.76482 1.21810 1.15902 1.18995 1.61877 1.60403 1.01987 1.01251 1.22045 0.97079 0.90468 1.00301 1.21700 0.98504 0.95940 0.88948 0.90339 1.21871 1.02041 0.91813 1.04104 1.20824 0.84651 0.78930 0.84572 1.90663 1.25154 1.42916 1.85680 1.45267 1.27365 1.56040 1.05532 1.21605 0.98050 1.03468 0.82770 1.23500 1.00226 0.96629 1.02034 1.23467 1.04108 0.97144 0.95570 0.94442 0.91808 0.92796 0.94248 0.94105 0.93019 0.95063 0.93237 0.90658 0.88427 0.74714 0.87262 0.87649 0.87513 0.86873 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.18 8.16 71.98 0.59 -6.59 16 2 C 0.19 8.70 1.49 44.17 0.07 8.77 16 3 H 0.05 2.16 4.52 -2.39 -0.01 2.15 16 4 C -0.59 -34.33 8.28 25.60 0.21 -34.12 16 5 H 0.02 1.03 6.80 -2.91 -0.02 1.01 16 6 C -0.02 -1.24 5.30 84.66 0.45 -0.79 16 7 N -0.94 -59.69 13.70 21.45 0.29 -59.40 16 8 Si 1.08 48.85 26.50 68.60 1.82 50.67 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.23 -9.01 5.73 99.48 0.57 -8.44 16 11 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 12 N -0.53 -23.07 4.29 -880.59 -3.78 -26.85 16 13 C 0.05 2.13 8.62 127.69 1.10 3.23 16 14 C 0.06 1.96 1.97 44.17 0.09 2.05 16 15 H 0.08 2.11 6.76 -2.39 -0.02 2.09 16 16 C -0.14 -3.94 8.68 71.98 0.62 -3.31 16 17 C 0.52 16.89 6.02 87.66 0.53 17.42 16 18 O -0.57 -24.13 15.36 -3.02 -0.05 -24.17 16 19 N -0.69 -15.20 5.57 -442.53 -2.46 -17.66 16 20 C 0.05 0.95 6.43 44.99 0.29 1.24 16 21 C -0.19 -2.64 10.46 30.62 0.32 -2.32 16 22 C -0.16 -2.04 10.46 30.62 0.32 -1.72 16 23 H 0.04 1.57 6.58 -2.39 -0.02 1.56 16 24 H 0.06 2.01 6.54 -2.39 -0.02 2.00 16 25 H 0.05 2.20 5.12 -2.39 -0.01 2.19 16 26 H 0.25 16.25 8.73 -92.70 -0.81 15.44 16 27 H 0.04 2.03 6.44 -2.39 -0.02 2.01 16 28 H 0.05 2.14 6.57 -2.39 -0.02 2.12 16 29 H 0.03 1.22 6.36 -2.39 -0.02 1.20 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 2.12 6.21 -2.39 -0.01 2.11 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.42 6.16 8.83 -92.71 -0.82 5.34 16 34 H 0.11 2.83 7.40 -2.39 -0.02 2.82 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -75.35 296.92 0.47 -74.88 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.07 Total: 18.68 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.58 Total: -16.15 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -5.95 Total: -103.90 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.17 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.82 Total: 50.67 kcal Total: -75.35 0.47 -74.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251516384.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.955 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds