Wall clock time and date at job start Mon Mar 30 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46778 * 2 1 4 4 C 1.50696 * 109.47480 * 240.00329 * 2 1 3 5 5 H 1.08008 * 119.99523 * 274.05828 * 4 2 1 6 6 C 1.37877 * 120.00513 * 94.33423 * 4 2 1 7 7 N 1.31512 * 119.99936 * 181.93052 * 6 4 2 8 8 Si 1.86796 * 119.99621 * 1.92929 * 6 4 2 9 9 H 1.48501 * 109.47385 * 85.08065 * 8 6 4 10 10 H 1.48501 * 109.46942 * 205.07660 * 8 6 4 11 11 H 1.48501 * 109.47254 * 325.07514 * 8 6 4 12 12 N 1.46505 * 109.47164 * 119.99775 * 2 1 3 13 13 C 1.34774 * 120.00089 * 275.00569 * 12 2 1 14 14 O 1.21284 * 120.00143 * 359.97438 * 13 12 2 15 15 C 1.50693 * 120.00019 * 179.97438 * 13 12 2 16 16 C 1.53003 * 110.01893 * 59.29814 * 15 13 12 17 17 C 1.54268 * 110.03469 * 297.90885 * 15 13 12 18 18 C 1.54967 * 104.16080 * 217.13614 * 17 15 13 19 19 C 1.54889 * 102.77712 * 37.88454 * 18 17 15 20 20 C 1.53875 * 110.03648 * 180.68745 * 15 13 12 21 21 H 1.09002 * 110.02894 * 359.97438 * 20 15 13 22 22 N 1.46903 * 110.03585 * 238.57378 * 20 15 13 23 23 H 1.09004 * 109.46721 * 64.00028 * 1 2 3 24 24 H 1.08999 * 109.46982 * 183.99554 * 1 2 3 25 25 H 1.08998 * 109.46998 * 303.99961 * 1 2 3 26 26 H 0.97003 * 119.99637 * 179.97438 * 7 6 4 27 27 H 0.96993 * 119.99427 * 95.00039 * 12 2 1 28 28 H 1.09005 * 109.47429 * 60.69768 * 16 15 13 29 29 H 1.08996 * 109.47515 * 180.69965 * 16 15 13 30 30 H 1.09001 * 109.47205 * 300.70310 * 16 15 13 31 31 H 1.08998 * 110.48146 * 335.77966 * 17 15 13 32 32 H 1.08999 * 110.49037 * 98.42596 * 17 15 13 33 33 H 1.08997 * 110.71931 * 279.57469 * 18 17 15 34 34 H 1.08999 * 110.76320 * 156.21951 * 18 17 15 35 35 H 1.09002 * 110.48715 * 203.40624 * 19 18 17 36 36 H 1.09002 * 110.49083 * 80.76481 * 19 18 17 37 37 H 1.00896 * 110.99845 * 179.97438 * 22 20 15 38 38 H 1.00900 * 110.99348 * 303.95094 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1501 -1.7839 -1.2239 6 6 2.3474 0.0109 -2.3626 7 7 2.7496 -0.6125 -3.4485 8 14 2.2027 1.8732 -2.3539 9 1 3.4498 2.4641 -1.8054 10 1 1.9930 2.3598 -3.7411 11 1 1.0504 2.2762 -1.5084 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4116 15 6 2.6488 -0.7287 3.5878 16 6 4.0445 -1.3001 3.3301 17 6 1.6773 -1.8623 3.9766 18 6 1.6736 -1.8435 5.5262 19 6 1.7405 -0.3304 5.8505 20 6 2.6894 0.2447 4.7788 21 1 2.3466 1.2312 4.4666 22 7 4.0559 0.3320 5.3110 23 1 -0.3633 0.4505 -0.9237 24 1 -0.3633 -1.0252 0.0716 25 1 -0.3633 0.5746 0.8520 26 1 2.9708 -0.1051 -4.2451 27 1 2.2491 -1.6317 1.1526 28 1 4.7316 -0.4879 3.0926 29 1 4.3935 -1.8223 4.2209 30 1 4.0030 -1.9972 2.4932 31 1 0.6788 -1.6580 3.5904 32 1 2.0418 -2.8207 3.6068 33 1 2.5476 -2.3620 5.9202 34 1 0.7548 -2.2818 5.9157 35 1 2.1507 -0.1718 6.8479 36 1 0.7522 0.1218 5.7672 37 1 4.0992 0.9676 6.0934 38 1 4.4034 -0.5803 5.5662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251540831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:53 Heat of formation + Delta-G solvation = -54.695524 kcal Electronic energy + Delta-G solvation = -18253.611633 eV Core-core repulsion = 15516.018599 eV Total energy + Delta-G solvation = -2737.593034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20639 -37.56187 -34.80504 -32.70852 -32.19302 -31.41459 -29.19940 -26.61261 -25.54101 -25.23518 -22.00115 -20.75566 -19.76926 -18.68155 -17.49527 -16.46709 -15.82827 -15.16336 -14.93243 -14.72310 -14.09495 -13.80422 -13.51979 -13.03247 -12.57095 -12.52769 -12.39895 -12.12836 -11.93900 -11.53392 -11.34942 -11.14298 -11.06933 -10.95415 -10.76970 -10.60424 -10.47596 -10.43171 -9.85493 -9.15101 -8.92349 -8.68849 -8.59426 -8.02046 -6.20605 -4.24062 3.28433 3.36481 3.37534 3.44357 4.00801 4.35565 4.45477 4.50054 4.77556 4.96344 5.17332 5.30081 5.33667 5.41828 5.53384 5.55422 5.68789 5.78551 5.84765 5.94771 6.03472 6.08772 6.20894 6.35131 6.43158 6.52351 6.56789 6.70826 6.97681 7.20860 7.22315 7.43193 7.49069 7.61054 8.18614 8.63455 8.80014 9.06412 9.41954 10.91210 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036471 B = 0.006591 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.555830 B = 4246.896364 C = 4312.304447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.700 5.700 13 C 0.515 3.485 14 O -0.559 6.559 15 C -0.080 4.080 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.159 4.159 20 C 0.096 3.904 21 H 0.107 0.893 22 N -0.836 5.836 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.267 0.733 27 H 0.392 0.608 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.336 0.664 38 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -2.897 17.249 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.066 0.934 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.348 5.348 13 C 0.300 3.700 14 O -0.439 6.439 15 C -0.084 4.084 16 C -0.181 4.181 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.198 4.198 20 C -0.016 4.016 21 H 0.125 0.875 22 N -0.366 5.366 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.149 0.851 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.280 -1.741 16.311 16.406 hybrid contribution -0.374 0.062 0.686 0.783 sum -0.654 -1.679 16.997 17.092 Atomic orbital electron populations 1.22237 0.98774 1.00011 0.99655 1.19084 0.90764 0.94308 0.82971 0.93383 1.21011 1.45152 0.95738 0.94817 0.90390 1.24927 0.93567 0.98582 0.95275 1.69881 1.44116 1.36214 1.02483 0.86897 0.79923 0.85844 0.77242 1.19840 1.21228 1.18496 1.46530 1.64813 1.13768 1.09685 1.20270 0.77832 0.87198 0.84698 1.90591 1.52017 1.16279 1.84970 1.21388 0.97275 0.95621 0.94096 1.21640 0.94529 1.01043 1.00929 1.22491 0.99397 0.97637 0.95746 1.22467 1.01486 0.96218 0.95719 1.23228 1.01411 0.96415 0.98772 1.22066 0.87051 1.00612 0.91856 0.87487 1.59014 1.22481 1.15225 1.39871 0.92737 0.93669 0.95303 0.92291 0.77437 0.90902 0.92463 0.92462 0.91014 0.90641 0.91660 0.91541 0.91959 0.91161 0.85092 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.44 37.16 0.35 -2.95 16 2 C 0.23 5.62 2.16 -69.08 -0.15 5.47 16 3 H 0.05 1.28 4.90 -51.93 -0.25 1.03 16 4 C -0.53 -14.40 9.05 -34.44 -0.31 -14.71 16 5 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 8 Si 0.87 21.98 26.72 -169.99 -4.54 17.44 16 9 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.45 6.87 56.52 0.39 -6.06 16 12 N -0.70 -14.39 4.90 -54.93 -0.27 -14.66 16 13 C 0.52 10.16 6.32 -10.99 -0.07 10.09 16 14 O -0.56 -13.09 14.87 5.55 0.08 -13.00 16 15 C -0.08 -1.16 0.78 -154.54 -0.12 -1.28 16 16 C -0.12 -1.65 7.20 37.16 0.27 -1.38 16 17 C -0.11 -1.39 5.84 -25.03 -0.15 -1.53 16 18 C -0.12 -1.20 6.91 -24.70 -0.17 -1.37 16 19 C -0.16 -1.72 6.52 -25.07 -0.16 -1.88 16 20 C 0.10 1.30 3.62 -66.59 -0.24 1.06 16 21 H 0.11 1.81 6.39 -51.93 -0.33 1.48 16 22 N -0.84 -9.57 8.06 -3.72 -0.03 -9.60 16 23 H 0.05 1.23 7.90 -51.93 -0.41 0.82 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.39 7.21 7.98 -40.82 -0.33 6.88 16 28 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 29 H 0.06 0.61 6.75 -51.93 -0.35 0.26 16 30 H 0.06 0.76 7.55 -51.93 -0.39 0.36 16 31 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 32 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.34 3.24 9.06 -39.29 -0.36 2.88 16 38 H 0.34 3.26 7.14 -39.29 -0.28 2.98 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -31.31 299.21 -6.35 -37.66 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.03 Total: 9.63 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.85 Total: -6.30 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.47 Total: -49.93 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.54 Total: 17.44 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.31 -6.35 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251540831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.032 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds