Wall clock time and date at job start Mon Mar 30 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46778 * 2 1 4 4 C 1.50696 * 109.47480 * 240.00329 * 2 1 3 5 5 H 1.08008 * 119.99523 * 274.05828 * 4 2 1 6 6 C 1.37877 * 120.00513 * 94.33423 * 4 2 1 7 7 N 1.31512 * 119.99936 * 181.93052 * 6 4 2 8 8 Si 1.86796 * 119.99621 * 1.92929 * 6 4 2 9 9 H 1.48501 * 109.47385 * 85.08065 * 8 6 4 10 10 H 1.48501 * 109.46942 * 205.07660 * 8 6 4 11 11 H 1.48501 * 109.47254 * 325.07514 * 8 6 4 12 12 N 1.46505 * 109.47164 * 119.99775 * 2 1 3 13 13 C 1.34774 * 120.00089 * 275.00569 * 12 2 1 14 14 O 1.21284 * 120.00143 * 359.97438 * 13 12 2 15 15 C 1.50693 * 120.00019 * 179.97438 * 13 12 2 16 16 C 1.53003 * 110.01893 * 59.29814 * 15 13 12 17 17 C 1.54268 * 110.03469 * 297.90885 * 15 13 12 18 18 C 1.54967 * 104.16080 * 217.13614 * 17 15 13 19 19 C 1.54889 * 102.77712 * 37.88454 * 18 17 15 20 20 C 1.53875 * 110.03648 * 180.68745 * 15 13 12 21 21 H 1.09002 * 110.02894 * 359.97438 * 20 15 13 22 22 N 1.46903 * 110.03585 * 238.57378 * 20 15 13 23 23 H 1.09004 * 109.46721 * 64.00028 * 1 2 3 24 24 H 1.08999 * 109.46982 * 183.99554 * 1 2 3 25 25 H 1.08998 * 109.46998 * 303.99961 * 1 2 3 26 26 H 0.97003 * 119.99637 * 179.97438 * 7 6 4 27 27 H 0.96993 * 119.99427 * 95.00039 * 12 2 1 28 28 H 1.09005 * 109.47429 * 60.69768 * 16 15 13 29 29 H 1.08996 * 109.47515 * 180.69965 * 16 15 13 30 30 H 1.09001 * 109.47205 * 300.70310 * 16 15 13 31 31 H 1.08998 * 110.48146 * 335.77966 * 17 15 13 32 32 H 1.08999 * 110.49037 * 98.42596 * 17 15 13 33 33 H 1.08997 * 110.71931 * 279.57469 * 18 17 15 34 34 H 1.08999 * 110.76320 * 156.21951 * 18 17 15 35 35 H 1.09002 * 110.48715 * 203.40624 * 19 18 17 36 36 H 1.09002 * 110.49083 * 80.76481 * 19 18 17 37 37 H 1.00896 * 110.99845 * 179.97438 * 22 20 15 38 38 H 1.00900 * 110.99348 * 303.95094 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1501 -1.7839 -1.2239 6 6 2.3474 0.0109 -2.3626 7 7 2.7496 -0.6125 -3.4485 8 14 2.2027 1.8732 -2.3539 9 1 3.4498 2.4641 -1.8054 10 1 1.9930 2.3598 -3.7411 11 1 1.0504 2.2762 -1.5084 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4116 15 6 2.6488 -0.7287 3.5878 16 6 4.0445 -1.3001 3.3301 17 6 1.6773 -1.8623 3.9766 18 6 1.6736 -1.8435 5.5262 19 6 1.7405 -0.3304 5.8505 20 6 2.6894 0.2447 4.7788 21 1 2.3466 1.2312 4.4666 22 7 4.0559 0.3320 5.3110 23 1 -0.3633 0.4505 -0.9237 24 1 -0.3633 -1.0252 0.0716 25 1 -0.3633 0.5746 0.8520 26 1 2.9708 -0.1051 -4.2451 27 1 2.2491 -1.6317 1.1526 28 1 4.7316 -0.4879 3.0926 29 1 4.3935 -1.8223 4.2209 30 1 4.0030 -1.9972 2.4932 31 1 0.6788 -1.6580 3.5904 32 1 2.0418 -2.8207 3.6068 33 1 2.5476 -2.3620 5.9202 34 1 0.7548 -2.2818 5.9157 35 1 2.1507 -0.1718 6.8479 36 1 0.7522 0.1218 5.7672 37 1 4.0992 0.9676 6.0934 38 1 4.4034 -0.5803 5.5662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251540831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:53 Heat of formation + Delta-G solvation = -78.267915 kcal Electronic energy + Delta-G solvation = -18254.633809 eV Core-core repulsion = 15516.018599 eV Total energy + Delta-G solvation = -2738.615210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52860 -38.94171 -36.66883 -34.48412 -33.41862 -32.67694 -30.85016 -27.55839 -27.34833 -26.56758 -23.60865 -21.85492 -21.32175 -20.23673 -18.92222 -18.18181 -17.30271 -16.68467 -16.16237 -15.94264 -15.61763 -15.38898 -14.69173 -14.56259 -14.37939 -14.24862 -13.57766 -13.44999 -13.08913 -13.05762 -12.94443 -12.82396 -12.52016 -12.42380 -11.98106 -11.90329 -11.82658 -11.63315 -11.45589 -11.23209 -10.89011 -10.48136 -9.80108 -9.48242 -8.40432 -6.46160 1.26701 1.31278 1.42088 1.81329 2.25240 2.46111 3.02359 3.46073 3.55450 3.72878 4.04887 4.19138 4.32724 4.39813 4.43307 4.47000 4.66294 4.71710 4.74445 4.80803 4.91697 4.93861 5.00514 5.08016 5.08386 5.16975 5.29522 5.35644 5.41300 5.43629 5.46947 5.76055 6.11934 6.33600 6.58126 6.72785 6.92512 7.20001 7.48414 8.74547 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036471 B = 0.006591 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.555830 B = 4246.896364 C = 4312.304447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.234 3.766 3 H 0.024 0.976 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.924 3.076 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.257 1.257 12 N -0.700 5.700 13 C 0.509 3.491 14 O -0.600 6.600 15 C -0.075 4.075 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.152 4.152 20 C 0.097 3.903 21 H 0.066 0.934 22 N -0.842 5.842 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.033 0.967 26 H 0.271 0.729 27 H 0.403 0.597 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.348 0.652 38 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -3.811 19.510 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.130 3.870 3 H 0.042 0.958 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.749 3.251 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.181 1.181 12 N -0.348 5.348 13 C 0.296 3.704 14 O -0.482 6.482 15 C -0.078 4.078 16 C -0.177 4.177 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.192 4.192 20 C -0.016 4.016 21 H 0.084 0.916 22 N -0.374 5.374 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.239 0.761 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.241 -2.680 18.597 18.791 hybrid contribution -0.362 0.328 0.021 0.489 sum -0.603 -2.352 18.618 18.776 Atomic orbital electron populations 1.22117 0.97156 1.01073 0.99582 1.18848 0.91946 0.92906 0.83348 0.95802 1.21180 1.44285 0.94971 0.95871 0.92365 1.25560 0.93748 1.02131 0.95159 1.69966 1.45860 1.37689 1.03209 0.86100 0.79625 0.81654 0.77696 1.20381 1.19966 1.18132 1.46305 1.65069 1.14239 1.09162 1.21230 0.76612 0.86850 0.85661 1.90571 1.53585 1.18313 1.85752 1.21439 0.98422 0.96340 0.91633 1.21636 0.93068 1.00376 1.02642 1.22525 0.97734 0.97136 0.97789 1.22467 1.03374 0.95432 0.93566 1.23159 1.00085 0.97048 0.98886 1.21875 0.88797 0.98381 0.92506 0.91550 1.58898 1.21305 1.16451 1.40733 0.93264 0.92102 0.94809 0.92008 0.76128 0.93219 0.88873 0.92525 0.92585 0.88806 0.89345 0.90053 0.89651 0.92358 0.83833 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.20 9.44 71.98 0.68 -5.52 16 2 C 0.23 11.38 2.16 44.24 0.10 11.48 16 3 H 0.02 1.29 4.90 -2.39 -0.01 1.28 16 4 C -0.52 -28.84 9.05 25.60 0.23 -28.61 16 5 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 6 C 0.03 1.97 5.47 84.65 0.46 2.44 16 7 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 8 Si 0.92 45.73 26.72 68.60 1.83 47.56 16 9 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.26 -12.47 6.87 99.48 0.68 -11.78 16 12 N -0.70 -28.66 4.90 -446.09 -2.19 -30.84 16 13 C 0.51 20.05 6.32 87.66 0.55 20.61 16 14 O -0.60 -28.68 14.87 -3.04 -0.05 -28.73 16 15 C -0.07 -2.06 0.78 -52.20 -0.04 -2.10 16 16 C -0.12 -2.92 7.20 71.98 0.52 -2.40 16 17 C -0.11 -2.44 5.84 31.70 0.19 -2.26 16 18 C -0.11 -1.74 6.91 31.91 0.22 -1.52 16 19 C -0.15 -2.88 6.52 31.67 0.21 -2.67 16 20 C 0.10 2.49 3.62 45.64 0.17 2.65 16 21 H 0.07 2.29 6.39 -2.39 -0.02 2.27 16 22 N -0.84 -17.41 8.06 -165.67 -1.34 -18.74 16 23 H 0.05 2.19 7.90 -2.39 -0.02 2.17 16 24 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.40 14.61 7.98 -92.71 -0.74 13.87 16 28 H 0.05 1.45 7.84 -2.38 -0.02 1.43 16 29 H 0.09 1.60 6.75 -2.39 -0.02 1.59 16 30 H 0.06 1.38 7.55 -2.39 -0.02 1.36 16 31 H 0.06 1.39 7.85 -2.39 -0.02 1.37 16 32 H 0.09 1.68 7.84 -2.39 -0.02 1.66 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.24 8.03 -2.39 -0.02 1.22 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.35 5.92 9.06 -89.70 -0.81 5.11 16 38 H 0.35 5.52 7.14 -89.69 -0.64 4.88 16 Total: -1.00 -68.82 299.21 0.70 -68.12 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -1.14 Total: 26.06 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 3.28 Total: -7.91 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.22 Total: -105.11 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.05 Total: -28.73 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.83 Total: 47.56 kcal Total: -68.82 0.70 -68.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251540831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.146 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds