Wall clock time and date at job start Mon Mar 30 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46890 * 2 1 4 4 C 1.50696 * 109.46863 * 239.99916 * 2 1 3 5 5 H 1.07999 * 120.00241 * 273.82757 * 4 2 1 6 6 C 1.37881 * 120.00269 * 93.83208 * 4 2 1 7 7 N 1.31507 * 120.00401 * 174.37858 * 6 4 2 8 8 Si 1.86804 * 119.99617 * 354.38210 * 6 4 2 9 9 H 1.48502 * 109.47083 * 84.73300 * 8 6 4 10 10 H 1.48498 * 109.47278 * 204.73420 * 8 6 4 11 11 H 1.48506 * 109.46938 * 324.73258 * 8 6 4 12 12 N 1.46498 * 109.46764 * 120.00313 * 2 1 3 13 13 C 1.34782 * 119.99762 * 274.99696 * 12 2 1 14 14 O 1.21282 * 119.99954 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99743 * 180.02562 * 13 12 2 16 16 C 1.52994 * 110.01786 * 53.46081 * 15 13 12 17 17 C 1.54267 * 110.02833 * 174.85144 * 15 13 12 18 18 C 1.54960 * 104.15889 * 95.75561 * 17 15 13 19 19 C 1.54889 * 102.78053 * 37.88430 * 18 17 15 20 20 C 1.53869 * 110.03201 * 292.06618 * 15 13 12 21 21 H 1.09000 * 110.03327 * 121.33414 * 20 15 13 22 22 N 1.46904 * 110.03404 * 359.95686 * 20 15 13 23 23 H 1.08995 * 109.47474 * 185.28472 * 1 2 3 24 24 H 1.08999 * 109.47310 * 305.28978 * 1 2 3 25 25 H 1.09004 * 109.47245 * 65.28655 * 1 2 3 26 26 H 0.97000 * 120.00429 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00559 * 94.99895 * 12 2 1 28 28 H 1.09002 * 109.47340 * 59.29727 * 16 15 13 29 29 H 1.09000 * 109.47400 * 299.29693 * 16 15 13 30 30 H 1.08996 * 109.47030 * 179.29611 * 16 15 13 31 31 H 1.08998 * 110.48289 * 214.39918 * 17 15 13 32 32 H 1.08996 * 110.48497 * 337.04432 * 17 15 13 33 33 H 1.09004 * 110.71920 * 279.56853 * 18 17 15 34 34 H 1.09004 * 110.92255 * 156.29501 * 18 17 15 35 35 H 1.08997 * 110.48643 * 203.40355 * 19 18 17 36 36 H 1.09001 * 110.59533 * 80.82058 * 19 18 17 37 37 H 1.00896 * 110.99953 * 173.74355 * 22 20 15 38 38 H 1.00901 * 110.99519 * 297.69840 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1534 -1.7836 -1.2228 6 6 2.3373 0.0096 -2.3661 7 7 2.8792 -0.5936 -3.4014 8 14 1.9810 1.8421 -2.4338 9 1 3.1097 2.5888 -1.8225 10 1 1.8177 2.2627 -3.8486 11 1 0.7321 2.1315 -1.6841 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6498 -0.7287 3.5875 16 6 3.9796 -1.4221 3.2852 17 6 2.8294 0.2780 4.7425 18 6 1.5113 0.1677 5.5499 19 6 1.1972 -1.3477 5.4876 20 6 1.6122 -1.7617 4.0607 21 1 2.0558 -2.7573 4.0741 22 7 0.4430 -1.7442 3.1715 23 1 -0.3634 -1.0232 0.0946 24 1 -0.3634 0.5937 0.8388 25 1 -0.3634 0.4297 -0.9336 26 1 3.0934 -0.0871 -4.2005 27 1 2.2489 -1.6318 1.1526 28 1 4.7109 -0.6809 2.9627 29 1 3.8344 -2.1573 2.4936 30 1 4.3411 -1.9222 4.1836 31 1 3.6810 -0.0011 5.3629 32 1 2.9552 1.2879 4.3522 33 1 0.7188 0.7463 5.0753 34 1 1.6582 0.4897 6.5809 35 1 0.1325 -1.5233 5.6413 36 1 1.7834 -1.8916 6.2283 37 1 -0.2011 -2.4845 3.4065 38 1 -0.0151 -0.8455 3.1942 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251540842.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:56 Heat of formation + Delta-G solvation = -55.401802 kcal Electronic energy + Delta-G solvation = -18534.980054 eV Core-core repulsion = 15797.356393 eV Total energy + Delta-G solvation = -2737.623661 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15912 -37.19324 -34.68330 -32.49832 -32.34030 -31.39447 -29.11256 -26.83882 -25.16250 -24.65708 -22.34866 -20.53292 -19.85102 -18.73073 -17.01663 -16.19047 -15.97238 -15.28494 -14.70654 -14.55627 -13.83472 -13.62980 -13.46820 -13.01980 -12.72251 -12.44240 -12.37268 -12.11475 -11.82378 -11.41296 -11.25720 -11.14047 -10.89920 -10.84476 -10.71681 -10.55255 -10.53420 -10.27570 -9.80872 -9.06220 -8.82628 -8.64877 -8.50159 -7.74426 -6.14571 -4.15761 3.32369 3.39693 3.47556 3.53253 4.19999 4.40846 4.47472 4.61682 4.75351 5.04082 5.22695 5.28583 5.38197 5.52959 5.53776 5.63503 5.67142 5.78605 5.91723 5.98293 6.08425 6.12737 6.29533 6.35493 6.46670 6.52363 6.70948 6.84329 7.09243 7.25103 7.37621 7.54985 7.57555 7.77714 8.30240 8.82851 8.90003 9.27103 9.50220 10.97579 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036237 B = 0.007149 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.496530 B = 3915.553592 C = 3950.460031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.235 3.765 3 H 0.042 0.958 4 C -0.526 4.526 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.260 1.260 12 N -0.677 5.677 13 C 0.527 3.473 14 O -0.575 6.575 15 C -0.084 4.084 16 C -0.136 4.136 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.159 4.159 20 C 0.101 3.899 21 H 0.087 0.913 22 N -0.834 5.834 23 H 0.047 0.953 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.266 0.734 27 H 0.394 0.606 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.338 0.662 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -2.784 16.636 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.132 3.868 3 H 0.060 0.940 4 C -0.564 4.564 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.323 5.323 13 C 0.312 3.688 14 O -0.456 6.456 15 C -0.088 4.088 16 C -0.194 4.194 17 C -0.146 4.146 18 C -0.159 4.159 19 C -0.198 4.198 20 C -0.012 4.012 21 H 0.105 0.895 22 N -0.363 5.363 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.228 0.772 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.470 -2.085 15.815 16.019 hybrid contribution -0.593 0.601 0.664 1.074 sum -2.063 -1.483 16.479 16.674 Atomic orbital electron populations 1.22209 0.98875 1.00079 0.99090 1.18937 0.90727 0.93837 0.83266 0.93986 1.21048 1.44657 0.95832 0.94884 0.90452 1.24914 0.93580 0.98340 0.95622 1.69896 1.41201 1.36802 1.05065 0.86936 0.80194 0.85808 0.77044 1.20052 1.21402 1.18407 1.46245 1.63504 1.13555 1.08952 1.19873 0.77913 0.86617 0.84402 1.90596 1.53352 1.16520 1.85172 1.21534 0.96149 0.95905 0.95204 1.21854 0.95240 1.00561 1.01767 1.22363 0.97090 1.00278 0.94873 1.22444 0.98267 0.95563 0.99631 1.23229 1.00756 0.97260 0.98576 1.22081 0.91608 0.98300 0.89185 0.89512 1.58911 1.11785 1.09465 1.56181 0.93359 0.95590 0.93308 0.92443 0.77157 0.92015 0.91605 0.92187 0.91555 0.89730 0.91351 0.91882 0.91979 0.91395 0.84898 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.23 37.16 0.34 -2.88 16 2 C 0.24 5.74 2.15 -69.08 -0.15 5.59 16 3 H 0.04 1.13 5.25 -51.93 -0.27 0.86 16 4 C -0.53 -14.49 9.04 -34.44 -0.31 -14.80 16 5 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 8 Si 0.87 22.09 26.35 -169.99 -4.48 17.61 16 9 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.41 6.26 56.52 0.35 -6.06 16 12 N -0.68 -13.99 4.16 -54.93 -0.23 -14.22 16 13 C 0.53 10.23 4.94 -10.98 -0.05 10.18 16 14 O -0.57 -13.22 15.10 5.56 0.08 -13.13 16 15 C -0.08 -1.21 0.80 -154.55 -0.12 -1.34 16 16 C -0.14 -1.77 7.99 37.15 0.30 -1.48 16 17 C -0.11 -1.45 5.68 -25.03 -0.14 -1.60 16 18 C -0.12 -1.44 6.91 -24.70 -0.17 -1.61 16 19 C -0.16 -1.63 6.48 -25.07 -0.16 -1.79 16 20 C 0.10 1.20 3.68 -66.60 -0.24 0.96 16 21 H 0.09 0.94 7.67 -51.93 -0.40 0.55 16 22 N -0.83 -10.77 7.51 -3.72 -0.03 -10.80 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.12 6.92 -51.93 -0.36 0.76 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.39 7.67 7.68 -40.82 -0.31 7.35 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 32 H 0.08 1.35 6.91 -51.93 -0.36 0.99 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.34 3.56 9.08 -39.29 -0.36 3.20 16 38 H 0.34 5.01 8.16 -39.29 -0.32 4.69 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -31.04 298.10 -6.35 -37.39 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.15 Total: 11.28 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.82 Total: -6.60 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.52 Total: -51.05 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.48 Total: 17.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.04 -6.35 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251540842.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.012 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds