Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46997 * 2 1 4 4 C 1.50693 * 109.47179 * 239.99425 * 2 1 3 5 5 H 1.08007 * 119.99798 * 240.00164 * 4 2 1 6 6 C 1.37873 * 120.00357 * 60.00008 * 4 2 1 7 7 N 1.31513 * 119.99864 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00397 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47190 * 90.00006 * 8 6 4 10 10 H 1.48500 * 109.47176 * 210.00376 * 8 6 4 11 11 H 1.48502 * 109.47107 * 330.00259 * 8 6 4 12 12 N 1.46507 * 109.46909 * 119.99514 * 2 1 3 13 13 C 1.34773 * 119.99707 * 275.00105 * 12 2 1 14 14 O 1.21282 * 120.00317 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00062 * 180.02562 * 13 12 2 16 16 H 1.08996 * 109.47510 * 59.99618 * 15 13 12 17 17 C 1.53002 * 109.46959 * 300.00199 * 15 13 12 18 18 C 1.52998 * 109.47133 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47343 * 59.99883 * 18 17 15 20 20 C 1.53002 * 109.47101 * 300.00136 * 19 18 17 21 21 C 1.52998 * 109.47133 * 59.99735 * 20 19 18 22 22 H 1.08995 * 109.47028 * 60.00231 * 21 20 19 23 23 N 1.46905 * 109.47084 * 180.02562 * 21 20 19 24 24 H 1.09000 * 109.47506 * 300.00324 * 1 2 3 25 25 H 1.09002 * 109.46819 * 60.00628 * 1 2 3 26 26 H 1.09008 * 109.47423 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00507 * 179.97438 * 7 6 4 28 28 H 0.96995 * 119.99793 * 94.99704 * 12 2 1 29 29 H 1.08991 * 109.47523 * 59.99889 * 17 15 13 30 30 H 1.09008 * 109.46838 * 299.99404 * 17 15 13 31 31 H 1.08996 * 109.47495 * 299.99517 * 18 17 15 32 32 H 1.08999 * 109.47151 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.47288 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47647 * 59.99946 * 19 18 17 35 35 H 1.09004 * 109.47098 * 299.99795 * 20 19 18 36 36 H 1.09001 * 109.47103 * 180.02562 * 20 19 18 37 37 H 1.00901 * 110.99869 * 300.00384 * 23 21 20 38 38 H 1.00896 * 110.99543 * 63.95506 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6035 8 14 2.3226 -1.1199 -4.0078 9 1 1.3449 -2.1620 -4.4121 10 1 2.4874 -0.1407 -5.1119 11 1 3.6309 -1.7570 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8581 1.1586 2.4116 15 6 2.6498 -0.7281 3.5876 16 1 3.6490 -1.1200 3.3981 17 6 1.7062 -1.8824 3.9316 18 6 2.2170 -2.6038 5.1804 19 6 2.2688 -1.6209 6.3519 20 6 3.2123 -0.4666 6.0078 21 6 2.7015 0.2547 4.7590 22 1 1.7023 0.6465 4.9489 23 7 3.6078 1.3626 4.4283 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 0.7096 1.1615 -3.4845 28 1 2.2489 -1.6317 1.1528 29 1 1.6697 -2.5829 3.0974 30 1 0.7068 -1.4906 4.1212 31 1 3.2162 -2.9957 4.9906 32 1 1.5446 -3.4258 5.4258 33 1 2.6323 -2.1350 7.2417 34 1 1.2696 -1.2290 6.5419 35 1 4.2116 -0.8585 5.8179 36 1 3.2496 0.2333 6.8425 37 1 3.6596 2.0260 5.1868 38 1 4.5248 1.0192 4.1850 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251601366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = -63.129365 kcal Electronic energy + Delta-G solvation = -17949.000102 eV Core-core repulsion = 15211.041349 eV Total energy + Delta-G solvation = -2737.958753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.68671 -37.39931 -34.61751 -33.42114 -32.25687 -31.04195 -28.62900 -27.74973 -25.16952 -23.40833 -22.01672 -20.81354 -19.92211 -19.05748 -17.17243 -15.72975 -15.62045 -15.31795 -14.87743 -14.51474 -14.01413 -13.71724 -13.63600 -13.15259 -12.84739 -12.45565 -12.22944 -12.12940 -11.55501 -11.26533 -11.12146 -11.03053 -10.93347 -10.83399 -10.63977 -10.51805 -10.25419 -10.18236 -10.14551 -8.93935 -8.69766 -8.45588 -8.22013 -7.68056 -6.04755 -4.13482 3.28203 3.34868 3.37266 3.68241 4.20444 4.43855 4.57324 4.67875 4.84717 5.03463 5.15386 5.26053 5.29132 5.39930 5.40846 5.50528 5.59480 5.77131 5.89081 6.01075 6.03642 6.08515 6.14275 6.27016 6.44477 6.92986 7.07554 7.26936 7.41781 7.61990 7.68704 7.71503 7.81743 8.04041 8.25602 8.84384 8.93203 9.38433 9.56513 11.01189 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039060 B = 0.005590 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.669795 B = 5007.752971 C = 5230.515476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.717 5.717 13 C 0.506 3.494 14 O -0.527 6.527 15 C -0.102 4.102 16 H 0.085 0.915 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.154 4.154 21 C 0.116 3.884 22 H 0.084 0.916 23 N -0.824 5.824 24 H 0.013 0.987 25 H 0.088 0.912 26 H 0.024 0.976 27 H 0.263 0.737 28 H 0.384 0.616 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.335 0.665 38 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -6.464 15.493 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.366 5.366 13 C 0.290 3.710 14 O -0.403 6.403 15 C -0.124 4.124 16 H 0.103 0.897 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.194 4.194 21 C 0.004 3.996 22 H 0.102 0.898 23 N -0.351 5.351 24 H 0.032 0.968 25 H 0.106 0.894 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.215 0.785 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.148 0.852 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.914 -5.278 14.743 15.928 hybrid contribution 1.028 -1.336 -0.079 1.687 sum 3.942 -6.614 14.665 16.563 Atomic orbital electron populations 1.22063 0.98781 0.98842 1.00705 1.18647 0.90769 0.93959 0.80208 0.93534 1.21246 1.32152 1.13031 0.90493 0.92269 1.24888 0.94925 0.94963 0.98994 1.69909 1.36102 1.22461 1.23706 0.86476 0.79123 0.79263 0.82375 1.20627 1.21115 1.19930 1.46506 1.66164 1.13228 1.10712 1.20145 0.79080 0.87524 0.84278 1.90673 1.49389 1.15468 1.84774 1.21404 1.00452 0.95991 0.94586 0.89732 1.21510 0.99043 0.96316 0.97997 1.21546 1.01364 0.97783 0.94846 1.21483 0.99924 0.96281 0.97781 1.22497 0.99551 0.98247 0.99126 1.21162 0.97872 0.89705 0.90872 0.89832 1.58691 1.14402 1.16493 1.45552 0.96766 0.89375 0.95700 0.92686 0.78472 0.91020 0.91354 0.91957 0.91781 0.92309 0.91835 0.92206 0.92139 0.85247 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 2 C 0.27 7.00 2.56 -69.08 -0.18 6.83 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.44 8.73 -34.45 -0.30 -14.74 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.72 -15.41 4.96 -54.93 -0.27 -15.69 16 13 C 0.51 10.36 6.95 -10.99 -0.08 10.28 16 14 O -0.53 -13.03 14.87 5.56 0.08 -12.94 16 15 C -0.10 -1.50 2.18 -91.77 -0.20 -1.70 16 16 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.11 -1.37 5.10 -26.73 -0.14 -1.50 16 18 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 19 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 20 C -0.15 -1.55 5.49 -26.73 -0.15 -1.70 16 21 C 0.12 1.57 2.25 -67.71 -0.15 1.42 16 22 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 23 N -0.82 -11.69 8.05 -4.67 -0.04 -11.73 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 26 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.38 7.22 7.96 -40.82 -0.32 6.89 16 29 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 30 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.34 3.99 9.04 -39.29 -0.36 3.64 16 38 H 0.33 4.25 8.98 -39.29 -0.35 3.89 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -31.57 302.47 -7.64 -39.21 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.32 Total: 10.83 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.26 Total: -5.35 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.32 Total: -52.31 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.57 -7.64 -39.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251601366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.920 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds