Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46997 * 2 1 4 4 C 1.50693 * 109.47179 * 239.99425 * 2 1 3 5 5 H 1.08007 * 119.99798 * 240.00164 * 4 2 1 6 6 C 1.37873 * 120.00357 * 60.00008 * 4 2 1 7 7 N 1.31513 * 119.99864 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00397 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47190 * 90.00006 * 8 6 4 10 10 H 1.48500 * 109.47176 * 210.00376 * 8 6 4 11 11 H 1.48502 * 109.47107 * 330.00259 * 8 6 4 12 12 N 1.46507 * 109.46909 * 119.99514 * 2 1 3 13 13 C 1.34773 * 119.99707 * 275.00105 * 12 2 1 14 14 O 1.21282 * 120.00317 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00062 * 180.02562 * 13 12 2 16 16 H 1.08996 * 109.47510 * 59.99618 * 15 13 12 17 17 C 1.53002 * 109.46959 * 300.00199 * 15 13 12 18 18 C 1.52998 * 109.47133 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47343 * 59.99883 * 18 17 15 20 20 C 1.53002 * 109.47101 * 300.00136 * 19 18 17 21 21 C 1.52998 * 109.47133 * 59.99735 * 20 19 18 22 22 H 1.08995 * 109.47028 * 60.00231 * 21 20 19 23 23 N 1.46905 * 109.47084 * 180.02562 * 21 20 19 24 24 H 1.09000 * 109.47506 * 300.00324 * 1 2 3 25 25 H 1.09002 * 109.46819 * 60.00628 * 1 2 3 26 26 H 1.09008 * 109.47423 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00507 * 179.97438 * 7 6 4 28 28 H 0.96995 * 119.99793 * 94.99704 * 12 2 1 29 29 H 1.08991 * 109.47523 * 59.99889 * 17 15 13 30 30 H 1.09008 * 109.46838 * 299.99404 * 17 15 13 31 31 H 1.08996 * 109.47495 * 299.99517 * 18 17 15 32 32 H 1.08999 * 109.47151 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.47288 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47647 * 59.99946 * 19 18 17 35 35 H 1.09004 * 109.47098 * 299.99795 * 20 19 18 36 36 H 1.09001 * 109.47103 * 180.02562 * 20 19 18 37 37 H 1.00901 * 110.99869 * 300.00384 * 23 21 20 38 38 H 1.00896 * 110.99543 * 63.95506 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6035 8 14 2.3226 -1.1199 -4.0078 9 1 1.3449 -2.1620 -4.4121 10 1 2.4874 -0.1407 -5.1119 11 1 3.6309 -1.7570 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8581 1.1586 2.4116 15 6 2.6498 -0.7281 3.5876 16 1 3.6490 -1.1200 3.3981 17 6 1.7062 -1.8824 3.9316 18 6 2.2170 -2.6038 5.1804 19 6 2.2688 -1.6209 6.3519 20 6 3.2123 -0.4666 6.0078 21 6 2.7015 0.2547 4.7590 22 1 1.7023 0.6465 4.9489 23 7 3.6078 1.3626 4.4283 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 0.7096 1.1615 -3.4845 28 1 2.2489 -1.6317 1.1528 29 1 1.6697 -2.5829 3.0974 30 1 0.7068 -1.4906 4.1212 31 1 3.2162 -2.9957 4.9906 32 1 1.5446 -3.4258 5.4258 33 1 2.6323 -2.1350 7.2417 34 1 1.2696 -1.2290 6.5419 35 1 4.2116 -0.8585 5.8179 36 1 3.2496 0.2333 6.8425 37 1 3.6596 2.0260 5.1868 38 1 4.5248 1.0192 4.1850 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251601366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = -86.362342 kcal Electronic energy + Delta-G solvation = -17950.007559 eV Core-core repulsion = 15211.041349 eV Total energy + Delta-G solvation = -2738.966210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06035 -38.78058 -36.55264 -34.59375 -34.06493 -32.31582 -30.35691 -28.86325 -27.32101 -24.63276 -23.23094 -22.28829 -21.10171 -20.66562 -18.90609 -17.46987 -17.14275 -16.68533 -16.36880 -15.64039 -15.60501 -15.06882 -14.74569 -14.53552 -14.24350 -13.99640 -13.68461 -13.50759 -13.14631 -12.90349 -12.78033 -12.67753 -12.26694 -12.19693 -12.12112 -12.08895 -11.81811 -11.45697 -11.15252 -11.03637 -10.61131 -10.31332 -9.59062 -9.29168 -8.15316 -6.33126 1.44910 1.46200 1.56782 2.06075 2.38464 2.74886 3.14532 3.58158 3.72059 3.80824 4.14753 4.24536 4.28804 4.40669 4.43680 4.50330 4.58757 4.77836 4.88788 4.93024 4.95254 5.12686 5.16830 5.19526 5.21973 5.31055 5.34006 5.48107 5.53399 5.67011 5.75201 5.98138 6.14720 6.41771 6.72050 6.76305 7.14426 7.35752 7.76933 8.91047 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039060 B = 0.005590 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.669795 B = 5007.752971 C = 5230.515476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.273 3.727 3 H -0.008 1.008 4 C -0.545 4.545 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.713 5.713 13 C 0.499 3.501 14 O -0.575 6.575 15 C -0.090 4.090 16 H 0.104 0.896 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.142 4.142 21 C 0.117 3.883 22 H 0.056 0.944 23 N -0.849 5.849 24 H 0.008 0.992 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.399 0.601 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.345 0.655 38 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -9.011 16.464 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.169 3.831 3 H 0.010 0.990 4 C -0.583 4.583 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.363 5.363 13 C 0.286 3.714 14 O -0.454 6.454 15 C -0.112 4.112 16 H 0.122 0.878 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.182 4.182 21 C 0.005 3.995 22 H 0.074 0.926 23 N -0.379 5.379 24 H 0.027 0.973 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.234 0.766 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.159 0.841 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.167 -7.866 15.751 18.092 hybrid contribution 0.621 -0.464 -0.363 0.856 sum 4.789 -8.330 15.388 18.141 Atomic orbital electron populations 1.21872 0.98626 0.99214 0.99227 1.18233 0.90852 0.91689 0.82328 0.99013 1.21560 1.32437 1.13424 0.90928 0.91018 1.25837 0.94918 0.95582 1.02413 1.70068 1.37196 1.23999 1.24518 0.85319 0.78974 0.78006 0.77860 1.19551 1.21247 1.18806 1.46294 1.66235 1.13881 1.09900 1.21224 0.77673 0.87160 0.85329 1.90648 1.51295 1.17870 1.85606 1.21401 1.01504 0.96528 0.91745 0.87801 1.21531 0.97781 0.95504 0.99870 1.21524 1.02315 0.97841 0.93152 1.21514 0.99514 0.95953 0.98517 1.22359 1.00111 0.98436 0.97252 1.21107 0.96718 0.89593 0.92057 0.92588 1.58644 1.14976 1.17484 1.46758 0.97284 0.91738 0.94176 0.92622 0.76610 0.90673 0.92815 0.90608 0.90215 0.90051 0.92458 0.90903 0.91053 0.84089 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 14.78 2.56 44.24 0.11 14.89 16 3 H -0.01 -0.52 7.58 -2.39 -0.02 -0.54 16 4 C -0.55 -29.75 8.73 25.60 0.22 -29.53 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -54.25 11.32 21.45 0.24 -54.01 16 8 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 12 N -0.71 -30.89 4.96 -446.10 -2.21 -33.10 16 13 C 0.50 20.76 6.95 87.66 0.61 21.37 16 14 O -0.58 -29.63 14.87 -3.04 -0.05 -29.67 16 15 C -0.09 -2.54 2.18 -11.54 -0.03 -2.57 16 16 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 17 C -0.11 -2.48 5.10 30.59 0.16 -2.33 16 18 C -0.11 -1.76 5.92 30.59 0.18 -1.58 16 19 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 20 C -0.14 -2.46 5.49 30.59 0.17 -2.30 16 21 C 0.12 3.08 2.25 44.91 0.10 3.18 16 22 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 23 N -0.85 -23.88 8.05 -168.68 -1.36 -25.23 16 24 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.06 3.72 6.07 -2.39 -0.01 3.71 16 26 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.40 14.65 7.96 -92.71 -0.74 13.91 16 29 H 0.07 1.66 7.56 -2.39 -0.02 1.64 16 30 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.35 8.13 9.04 -89.69 -0.81 7.32 16 38 H 0.34 8.39 8.98 -89.70 -0.81 7.59 16 Total: -1.00 -70.49 302.47 0.19 -70.30 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -1.29 Total: 32.49 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 2.82 Total: -5.59 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.33 Total: -112.34 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.49 0.19 -70.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251601366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.058 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds