Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47526 * 2 1 4 4 C 1.50704 * 109.46988 * 119.99896 * 2 1 3 5 5 H 1.08001 * 119.99645 * 120.00004 * 4 2 1 6 6 C 1.37882 * 119.99970 * 300.27139 * 4 2 1 7 7 N 1.31513 * 119.99687 * 359.72654 * 6 4 2 8 8 Si 1.86797 * 119.99899 * 179.72698 * 6 4 2 9 9 H 1.48497 * 109.47401 * 60.00239 * 8 6 4 10 10 H 1.48503 * 109.47007 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46937 * 299.99908 * 8 6 4 12 12 N 1.46899 * 109.47027 * 239.99751 * 2 1 3 13 13 C 1.46908 * 110.99850 * 197.48019 * 12 2 1 14 14 C 1.46893 * 111.00021 * 73.52995 * 12 2 1 15 15 H 1.08994 * 109.63580 * 59.66797 * 14 12 2 16 16 C 1.53060 * 109.63378 * 180.02562 * 14 12 2 17 17 C 1.51790 * 110.74497 * 34.78297 * 16 14 12 18 18 C 1.51773 * 113.81243 * 66.81154 * 17 16 14 19 19 C 1.52991 * 110.87887 * 292.99864 * 18 17 16 20 20 N 1.47192 * 108.66782 * 86.46877 * 19 18 17 21 21 C 1.33370 * 120.42428 * 288.04049 * 20 19 18 22 22 O 1.21285 * 119.88959 * 180.28702 * 21 20 19 23 23 H 1.08999 * 109.46682 * 52.58666 * 1 2 3 24 24 H 1.08998 * 109.47377 * 172.59219 * 1 2 3 25 25 H 1.09007 * 109.46979 * 292.58986 * 1 2 3 26 26 H 0.96997 * 119.99497 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46942 * 69.92589 * 13 12 2 28 28 H 1.08994 * 109.46681 * 189.92391 * 13 12 2 29 29 H 1.08996 * 109.46766 * 309.92718 * 13 12 2 30 30 H 1.08999 * 109.22454 * 155.11302 * 16 14 12 31 31 H 1.08997 * 109.22022 * 274.49865 * 16 14 12 32 32 H 1.09005 * 108.61391 * 187.93002 * 17 16 14 33 33 H 1.09003 * 108.61324 * 305.83202 * 17 16 14 34 34 H 1.08998 * 109.19960 * 53.35397 * 18 17 16 35 35 H 1.08996 * 109.20128 * 172.63695 * 18 17 16 36 36 H 1.09006 * 109.60285 * 206.21715 * 19 18 17 37 37 H 1.08997 * 109.60843 * 326.54127 * 19 18 17 38 38 H 0.96994 * 119.79052 * 108.03483 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6946 -0.2426 2.4828 7 7 0.9385 0.8267 2.6034 8 14 2.3109 -1.1276 4.0080 9 1 3.7959 -1.1283 4.0138 10 1 1.8110 -0.4310 5.2205 11 1 1.8152 -2.5274 4.0022 12 7 2.0196 -0.6925 -1.1994 13 6 3.4285 -1.0795 -1.0456 14 6 1.8285 0.1333 -2.3990 15 1 2.3710 1.0721 -2.2876 16 6 2.3477 -0.6169 -3.6280 17 6 2.1000 -2.1082 -3.4919 18 6 0.6311 -2.4898 -3.5130 19 6 -0.0875 -1.9610 -2.2702 20 7 -0.5323 -0.5829 -2.5339 21 6 0.3531 0.4126 -2.5947 22 8 -0.0246 1.5454 -2.8073 23 1 -0.3633 0.6244 -0.8163 24 1 -0.3634 -1.0191 -0.1325 25 1 -0.3633 0.3948 0.9489 26 1 0.7006 1.1556 3.4843 27 1 3.5074 -1.8783 -0.3082 28 1 3.8158 -1.4288 -2.0027 29 1 4.0073 -0.2183 -0.7118 30 1 1.8359 -0.2476 -4.5166 31 1 3.4182 -0.4395 -3.7309 32 1 2.6045 -2.6209 -4.3109 33 1 2.5323 -2.4483 -2.5508 34 1 0.1642 -2.0687 -4.4033 35 1 0.5433 -3.5758 -3.5429 36 1 -0.9517 -2.5888 -2.0526 37 1 0.5952 -1.9714 -1.4207 38 1 -1.4754 -0.3975 -2.6643 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252449459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = -2.430130 kcal Electronic energy + Delta-G solvation = -19286.326934 eV Core-core repulsion = 16551.000298 eV Total energy + Delta-G solvation = -2735.326636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41006 -36.97765 -35.33543 -33.82099 -32.25987 -30.03481 -28.72385 -26.69737 -24.93874 -23.98571 -22.74866 -20.66027 -19.78802 -18.70610 -16.69910 -16.32702 -16.19830 -15.18121 -14.60672 -14.18622 -14.10734 -13.69147 -13.42927 -13.01656 -12.68676 -12.41946 -12.12933 -11.92778 -11.56008 -11.24892 -11.01156 -10.84808 -10.67402 -10.60508 -10.32648 -10.21209 -10.06692 -9.86328 -9.80061 -9.20499 -8.78965 -8.56608 -8.25478 -7.22824 -6.03283 -4.11476 3.27016 3.28427 3.34077 3.35089 3.97903 4.35890 4.81114 4.95238 5.13744 5.26522 5.27167 5.40552 5.63851 5.74573 5.91813 5.99721 6.05288 6.12412 6.27459 6.28854 6.35542 6.40938 6.61498 6.74180 6.85785 6.92784 7.10604 7.15399 7.36210 7.50565 7.61854 7.77864 7.88971 8.06790 8.28067 8.46281 8.88940 8.94607 9.54259 11.02101 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.008967 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.707977 B = 3121.892462 C = 3410.742119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.206 3.794 3 H 0.002 0.998 4 C -0.515 4.515 5 H 0.067 0.933 6 C 0.061 3.939 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.522 5.522 13 C 0.030 3.970 14 C 0.061 3.939 15 H 0.064 0.936 16 C -0.106 4.106 17 C -0.120 4.120 18 C -0.128 4.128 19 C 0.084 3.916 20 N -0.713 5.713 21 C 0.551 3.449 22 O -0.573 6.573 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.143 0.857 38 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.156 -7.392 -9.916 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.100 3.900 3 H 0.020 0.980 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.248 5.248 13 C -0.117 4.117 14 C -0.051 4.051 15 H 0.082 0.918 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.167 4.167 19 C -0.040 4.040 20 N -0.364 5.364 21 C 0.339 3.661 22 O -0.453 6.453 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.160 0.840 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.823 -7.151 -9.905 12.244 hybrid contribution 0.306 0.400 0.945 1.071 sum 1.129 -6.751 -8.960 11.275 Atomic orbital electron populations 1.22313 0.97466 0.98959 1.01760 1.19388 0.92740 0.92471 0.85387 0.97993 1.21208 1.31609 1.12757 0.89757 0.91523 1.24955 0.95062 0.95015 0.99075 1.69909 1.36211 1.22793 1.23587 0.86595 0.79036 0.79718 0.82228 1.20353 1.21405 1.20212 1.62413 1.18328 1.41065 1.03003 1.22378 0.88506 1.00748 1.00092 1.22022 0.92590 0.96995 0.93489 0.91791 1.21322 1.00735 0.96143 0.96235 1.21181 0.96657 0.94888 1.02970 1.21678 0.96231 1.00203 0.98570 1.22502 1.00618 0.80369 1.00525 1.45803 1.09290 1.08927 1.72348 1.19942 0.88741 0.83967 0.73449 1.90704 1.80976 1.22102 1.51505 0.95719 0.94286 0.89899 0.92855 0.90486 0.92980 0.95848 0.92242 0.91479 0.93426 0.89240 0.92969 0.91698 0.91817 0.83965 0.77600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 7.36 37.16 0.27 -3.28 16 2 C 0.21 5.03 2.02 -68.86 -0.14 4.89 16 3 H 0.00 0.07 8.00 -51.93 -0.42 -0.35 16 4 C -0.51 -13.32 7.95 -34.44 -0.27 -13.60 16 5 H 0.07 1.65 5.67 -52.49 -0.30 1.36 16 6 C 0.06 1.64 5.28 -17.82 -0.09 1.55 16 7 N -0.89 -25.22 11.28 55.43 0.63 -24.60 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.52 -10.13 1.08 -229.21 -0.25 -10.37 16 13 C 0.03 0.54 7.53 60.07 0.45 0.99 16 14 C 0.06 1.13 2.17 -68.48 -0.15 0.98 16 15 H 0.06 1.30 8.09 -51.93 -0.42 0.88 16 16 C -0.11 -1.53 4.68 -27.31 -0.13 -1.65 16 17 C -0.12 -1.53 4.84 -27.97 -0.14 -1.66 16 18 C -0.13 -1.59 5.74 -27.36 -0.16 -1.75 16 19 C 0.08 1.23 5.10 -3.67 -0.02 1.21 16 20 N -0.71 -11.89 3.73 -59.90 -0.22 -12.12 16 21 C 0.55 10.99 3.74 -11.25 -0.04 10.94 16 22 O -0.57 -13.53 17.51 5.55 0.10 -13.43 16 23 H 0.02 0.59 4.22 -51.93 -0.22 0.37 16 24 H 0.04 0.87 5.75 -51.93 -0.30 0.57 16 25 H 0.08 2.28 5.89 -51.93 -0.31 1.97 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.08 1.40 6.19 -51.93 -0.32 1.07 16 28 H 0.05 0.75 4.98 -51.93 -0.26 0.49 16 29 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.06 0.85 7.86 -51.93 -0.41 0.44 16 31 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.23 4.86 -51.93 -0.25 0.97 16 34 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.14 2.50 3.85 -51.93 -0.20 2.30 16 38 H 0.39 5.98 8.91 -40.82 -0.36 5.61 16 LS Contribution 271.54 15.07 4.09 4.09 Total: -1.00 -29.82 271.54 -6.48 -36.30 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.39 Total: 5.82 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.41 Total: -1.39 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.16 Total: -47.09 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.10 Total: -13.43 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.82 -6.48 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252449459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.867 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds