Wall clock time and date at job start Mon Mar 30 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47526 * 2 1 4 4 C 1.50704 * 109.46988 * 119.99896 * 2 1 3 5 5 H 1.08001 * 119.99645 * 120.00004 * 4 2 1 6 6 C 1.37882 * 119.99970 * 300.27139 * 4 2 1 7 7 N 1.31513 * 119.99687 * 359.72654 * 6 4 2 8 8 Si 1.86797 * 119.99899 * 179.72698 * 6 4 2 9 9 H 1.48497 * 109.47401 * 60.00239 * 8 6 4 10 10 H 1.48503 * 109.47007 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46937 * 299.99908 * 8 6 4 12 12 N 1.46899 * 109.47027 * 239.99751 * 2 1 3 13 13 C 1.46908 * 110.99850 * 197.48019 * 12 2 1 14 14 C 1.46893 * 111.00021 * 73.52995 * 12 2 1 15 15 H 1.08994 * 109.63580 * 59.66797 * 14 12 2 16 16 C 1.53060 * 109.63378 * 180.02562 * 14 12 2 17 17 C 1.51790 * 110.74497 * 34.78297 * 16 14 12 18 18 C 1.51773 * 113.81243 * 66.81154 * 17 16 14 19 19 C 1.52991 * 110.87887 * 292.99864 * 18 17 16 20 20 N 1.47192 * 108.66782 * 86.46877 * 19 18 17 21 21 C 1.33370 * 120.42428 * 288.04049 * 20 19 18 22 22 O 1.21285 * 119.88959 * 180.28702 * 21 20 19 23 23 H 1.08999 * 109.46682 * 52.58666 * 1 2 3 24 24 H 1.08998 * 109.47377 * 172.59219 * 1 2 3 25 25 H 1.09007 * 109.46979 * 292.58986 * 1 2 3 26 26 H 0.96997 * 119.99497 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46942 * 69.92589 * 13 12 2 28 28 H 1.08994 * 109.46681 * 189.92391 * 13 12 2 29 29 H 1.08996 * 109.46766 * 309.92718 * 13 12 2 30 30 H 1.08999 * 109.22454 * 155.11302 * 16 14 12 31 31 H 1.08997 * 109.22022 * 274.49865 * 16 14 12 32 32 H 1.09005 * 108.61391 * 187.93002 * 17 16 14 33 33 H 1.09003 * 108.61324 * 305.83202 * 17 16 14 34 34 H 1.08998 * 109.19960 * 53.35397 * 18 17 16 35 35 H 1.08996 * 109.20128 * 172.63695 * 18 17 16 36 36 H 1.09006 * 109.60285 * 206.21715 * 19 18 17 37 37 H 1.08997 * 109.60843 * 326.54127 * 19 18 17 38 38 H 0.96994 * 119.79052 * 108.03483 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6946 -0.2426 2.4828 7 7 0.9385 0.8267 2.6034 8 14 2.3109 -1.1276 4.0080 9 1 3.7959 -1.1283 4.0138 10 1 1.8110 -0.4310 5.2205 11 1 1.8152 -2.5274 4.0022 12 7 2.0196 -0.6925 -1.1994 13 6 3.4285 -1.0795 -1.0456 14 6 1.8285 0.1333 -2.3990 15 1 2.3710 1.0721 -2.2876 16 6 2.3477 -0.6169 -3.6280 17 6 2.1000 -2.1082 -3.4919 18 6 0.6311 -2.4898 -3.5130 19 6 -0.0875 -1.9610 -2.2702 20 7 -0.5323 -0.5829 -2.5339 21 6 0.3531 0.4126 -2.5947 22 8 -0.0246 1.5454 -2.8073 23 1 -0.3633 0.6244 -0.8163 24 1 -0.3634 -1.0191 -0.1325 25 1 -0.3633 0.3948 0.9489 26 1 0.7006 1.1556 3.4843 27 1 3.5074 -1.8783 -0.3082 28 1 3.8158 -1.4288 -2.0027 29 1 4.0073 -0.2183 -0.7118 30 1 1.8359 -0.2476 -4.5166 31 1 3.4182 -0.4395 -3.7309 32 1 2.6045 -2.6209 -4.3109 33 1 2.5323 -2.4483 -2.5508 34 1 0.1642 -2.0687 -4.4033 35 1 0.5433 -3.5758 -3.5429 36 1 -0.9517 -2.5888 -2.0526 37 1 0.5952 -1.9714 -1.4207 38 1 -1.4754 -0.3975 -2.6643 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252449459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:39 Heat of formation + Delta-G solvation = -22.159350 kcal Electronic energy + Delta-G solvation = -19287.182458 eV Core-core repulsion = 16551.000298 eV Total energy + Delta-G solvation = -2736.182160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91236 -38.58759 -36.81712 -35.41876 -33.95561 -31.54199 -30.43014 -28.16213 -26.86089 -25.33772 -24.24951 -22.29799 -21.17404 -20.15588 -18.33274 -18.14411 -17.67023 -16.89830 -16.24928 -15.79407 -15.59080 -14.95436 -14.94629 -14.50995 -14.34575 -13.88190 -13.62812 -13.39856 -13.18650 -12.89041 -12.64110 -12.54712 -12.35979 -12.11042 -11.89574 -11.77565 -11.67959 -11.32933 -11.17437 -10.89084 -10.63371 -10.50817 -9.78469 -8.89731 -8.09168 -6.24420 1.45126 1.46706 1.53950 1.70006 2.42706 2.59536 3.16842 3.25238 3.64305 3.95725 4.12583 4.22179 4.40080 4.52668 4.59383 4.78416 4.80370 4.85148 4.92639 4.97660 5.04926 5.15847 5.24878 5.28783 5.32106 5.36210 5.49585 5.56039 5.69547 5.77334 5.80740 6.04598 6.19296 6.30544 6.44734 6.58828 6.91663 7.38716 7.46223 8.96092 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.008967 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.707977 B = 3121.892462 C = 3410.742119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.213 3.787 3 H -0.054 1.054 4 C -0.520 4.520 5 H 0.080 0.920 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.502 5.502 13 C 0.031 3.969 14 C 0.058 3.942 15 H 0.035 0.965 16 C -0.099 4.099 17 C -0.119 4.119 18 C -0.123 4.123 19 C 0.077 3.923 20 N -0.701 5.701 21 C 0.542 3.458 22 O -0.621 6.621 23 H 0.021 0.979 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.259 0.741 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.002 0.998 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -10.493 -10.996 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H -0.037 1.037 4 C -0.558 4.558 5 H 0.098 0.902 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.228 5.228 13 C -0.116 4.116 14 C -0.054 4.054 15 H 0.053 0.947 16 C -0.137 4.137 17 C -0.156 4.156 18 C -0.161 4.161 19 C -0.046 4.046 20 N -0.350 5.350 21 C 0.330 3.670 22 O -0.505 6.505 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.020 0.980 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.588 -10.316 -11.002 15.166 hybrid contribution 0.058 1.372 1.232 1.845 sum 1.646 -8.944 -9.770 13.348 Atomic orbital electron populations 1.22116 0.97414 0.99647 0.99690 1.19138 0.92805 0.89853 0.87649 1.03672 1.21572 1.31184 1.12852 0.90190 0.90170 1.25835 0.95273 0.95675 1.02402 1.70094 1.37789 1.24576 1.23959 0.85520 0.78679 0.78839 0.78035 1.19525 1.21988 1.18837 1.62405 1.19486 1.39583 1.01292 1.22467 0.87049 0.99748 1.02356 1.22087 0.91859 0.96464 0.94995 0.94725 1.21352 1.01681 0.97048 0.93660 1.21202 0.97273 0.93301 1.03868 1.21636 0.95546 1.01863 0.97026 1.22630 1.01530 0.79276 1.01129 1.45832 1.09301 1.09390 1.70475 1.20248 0.89728 0.83824 0.73215 1.90671 1.81762 1.24107 1.53967 0.95994 0.92337 0.93392 0.93229 0.90563 0.88836 0.97972 0.91825 0.89622 0.90264 0.89919 0.92570 0.88815 0.89301 0.86486 0.76837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 7.36 71.98 0.53 -5.97 16 2 C 0.21 10.71 2.02 44.17 0.09 10.80 16 3 H -0.05 -3.30 8.00 -2.39 -0.02 -3.32 16 4 C -0.52 -27.06 7.95 25.60 0.20 -26.86 16 5 H 0.08 3.89 5.67 -2.91 -0.02 3.87 16 6 C 0.01 0.36 5.28 84.66 0.45 0.81 16 7 N -0.92 -54.41 11.28 21.45 0.24 -54.16 16 8 Si 0.96 42.46 29.54 68.60 2.03 44.48 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 N -0.50 -19.31 1.08 -879.10 -0.95 -20.26 16 13 C 0.03 1.05 7.53 127.69 0.96 2.01 16 14 C 0.06 2.15 2.17 44.42 0.10 2.25 16 15 H 0.03 1.48 8.09 -2.39 -0.02 1.46 16 16 C -0.10 -2.60 4.68 30.22 0.14 -2.46 16 17 C -0.12 -2.53 4.84 29.79 0.14 -2.38 16 18 C -0.12 -2.52 5.74 30.19 0.17 -2.34 16 19 C 0.08 2.05 5.10 86.24 0.44 2.49 16 20 N -0.70 -22.69 3.73 -462.59 -1.72 -24.41 16 21 C 0.54 21.83 3.74 88.11 0.33 22.16 16 22 O -0.62 -30.44 17.51 -3.04 -0.05 -30.49 16 23 H 0.02 1.08 4.22 -2.39 -0.01 1.07 16 24 H 0.06 2.61 5.75 -2.39 -0.01 2.60 16 25 H 0.05 2.73 5.89 -2.38 -0.01 2.72 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.08 2.61 6.19 -2.38 -0.01 2.59 16 28 H 0.09 2.40 4.98 -2.39 -0.01 2.38 16 29 H 0.00 0.06 8.08 -2.39 -0.02 0.04 16 30 H 0.06 1.65 7.86 -2.39 -0.02 1.63 16 31 H 0.09 1.94 7.56 -2.39 -0.02 1.92 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.90 4.86 -2.39 -0.01 1.89 16 34 H 0.06 1.16 8.05 -2.39 -0.02 1.14 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.12 3.84 3.85 -2.39 -0.01 3.83 16 38 H 0.40 11.81 8.91 -92.71 -0.83 10.99 16 Total: -1.00 -67.89 271.54 3.35 -64.54 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.25 Total: 19.80 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 3.55 Total: 0.50 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -2.43 Total: -98.83 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.89 3.35 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252449459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.385 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds