Wall clock time and date at job start Mon Mar 30 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46670 * 2 1 4 4 C 1.50701 * 109.46699 * 240.00019 * 2 1 3 5 5 H 1.08001 * 119.99416 * 239.99594 * 4 2 1 6 6 C 1.37876 * 120.00248 * 60.00525 * 4 2 1 7 7 N 1.31512 * 119.99751 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47165 * 89.99825 * 8 6 4 10 10 H 1.48498 * 109.46972 * 209.99618 * 8 6 4 11 11 H 1.48500 * 109.46943 * 329.99533 * 8 6 4 12 12 N 1.46902 * 109.46829 * 119.99880 * 2 1 3 13 13 C 1.46898 * 110.99491 * 176.04485 * 12 2 1 14 14 C 1.46889 * 111.00219 * 299.99909 * 12 2 1 15 15 H 1.09000 * 109.79591 * 59.97369 * 14 12 2 16 16 C 1.53065 * 109.63437 * 180.47226 * 14 12 2 17 17 C 1.51790 * 110.74576 * 204.62446 * 16 14 12 18 18 C 1.51779 * 113.81327 * 293.18238 * 17 16 14 19 19 C 1.52992 * 110.87792 * 66.99765 * 18 17 16 20 20 N 1.47188 * 108.66797 * 273.54260 * 19 18 17 21 21 C 1.33373 * 120.43438 * 71.96369 * 20 19 18 22 22 O 1.21281 * 119.89686 * 179.72043 * 21 20 19 23 23 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47068 * 300.00099 * 1 2 3 25 25 H 1.09005 * 109.47314 * 60.00162 * 1 2 3 26 26 H 0.97003 * 119.99949 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47304 * 175.87641 * 13 12 2 28 28 H 1.09004 * 109.47615 * 295.87988 * 13 12 2 29 29 H 1.08994 * 109.47207 * 55.87999 * 13 12 2 30 30 H 1.08997 * 109.22374 * 84.29404 * 16 14 12 31 31 H 1.09004 * 109.21983 * 324.94613 * 16 14 12 32 32 H 1.09006 * 108.61263 * 172.06590 * 17 16 14 33 33 H 1.08999 * 108.50577 * 54.22570 * 17 16 14 34 34 H 1.09003 * 109.19667 * 306.64159 * 18 17 16 35 35 H 1.09000 * 109.16063 * 187.33345 * 18 17 16 36 36 H 1.09000 * 109.59944 * 33.29347 * 19 18 17 37 37 H 1.08998 * 109.60184 * 153.78901 * 19 18 17 38 38 H 0.97000 * 119.78645 * 251.97263 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 1 0.4589 -0.0232 2.4430 16 6 2.0856 -0.7652 3.6494 17 6 1.1928 -0.5260 4.8534 18 6 1.2008 0.9093 5.3468 19 6 0.5588 1.8428 4.3186 20 7 1.5889 2.2610 3.3540 21 6 2.0625 1.3976 2.4546 22 8 2.9076 1.7541 1.6610 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7082 1.1610 -3.4844 27 1 3.8258 -1.2453 2.1191 28 1 3.7990 -1.4147 0.3474 29 1 3.9177 0.2007 1.0853 30 1 3.0912 -0.4084 3.8716 31 1 2.1234 -1.8338 3.4373 32 1 1.5223 -1.1748 5.6651 33 1 0.1713 -0.7963 4.5859 34 1 2.2302 1.2225 5.5216 35 1 0.6443 0.9693 6.2820 36 1 -0.2399 1.3168 3.7957 37 1 0.1533 2.7195 4.8237 38 1 1.9257 3.1705 3.3727 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252449460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:42 Heat of formation + Delta-G solvation = -52.285378 kcal Electronic energy + Delta-G solvation = -18777.283892 eV Core-core repulsion = 16039.795370 eV Total energy + Delta-G solvation = -2737.488522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.67546 -37.99273 -37.65406 -35.14128 -33.84094 -31.65008 -30.55562 -28.04720 -26.58525 -25.48929 -24.50200 -22.18418 -21.43003 -19.74836 -18.59753 -18.08037 -17.74721 -16.97229 -16.15950 -15.82798 -15.45363 -15.16449 -14.89881 -14.78250 -14.25381 -13.91260 -13.66778 -13.37633 -12.97095 -12.92245 -12.70291 -12.64824 -12.28334 -12.24419 -12.01406 -11.81754 -11.66716 -11.52120 -11.27834 -11.16367 -10.83303 -10.49202 -9.96555 -8.76362 -8.09164 -6.19628 1.39657 1.41307 1.51638 1.73587 2.42450 2.46104 3.18625 3.33466 3.65423 3.93594 3.96875 4.14288 4.32369 4.44700 4.47752 4.61426 4.73593 4.84828 4.87941 4.95472 5.04964 5.10749 5.18123 5.19744 5.23368 5.26926 5.34325 5.49767 5.56656 5.73334 5.84284 6.00852 6.26639 6.32329 6.36516 6.73360 6.94675 7.39218 7.47802 8.97478 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040314 B = 0.007148 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.376591 B = 3916.324971 C = 4077.898327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.205 3.795 3 H -0.016 1.016 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.514 5.514 13 C 0.029 3.971 14 C 0.065 3.935 15 H 0.106 0.894 16 C -0.100 4.100 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.099 3.901 20 N -0.721 5.721 21 C 0.480 3.520 22 O -0.588 6.588 23 H 0.036 0.964 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.259 0.741 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -0.494 18.326 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.001 0.999 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.237 5.237 13 C -0.119 4.119 14 C -0.047 4.047 15 H 0.124 0.876 16 C -0.138 4.138 17 C -0.155 4.155 18 C -0.173 4.173 19 C -0.024 4.024 20 N -0.373 5.373 21 C 0.266 3.734 22 O -0.468 6.468 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.426 -0.906 17.773 17.960 hybrid contribution 0.836 1.146 -1.347 1.956 sum -1.590 0.240 16.426 16.504 Atomic orbital electron populations 1.21653 0.97468 0.99262 0.99336 1.19196 0.92209 0.91871 0.86916 0.99857 1.21468 1.30783 1.12014 0.91314 0.92574 1.25750 0.95592 0.95849 1.02008 1.70044 1.38222 1.24335 1.23781 0.85502 0.78852 0.78232 0.78711 1.19554 1.21067 1.19556 1.62594 1.10408 1.49134 1.01540 1.22324 0.88624 1.00198 1.00771 1.22300 1.01313 0.87752 0.93379 0.87630 1.21347 0.99159 1.00927 0.92360 1.21168 1.00281 0.97593 0.96503 1.21816 1.01914 0.94239 0.99283 1.22126 0.89488 1.00973 0.89814 1.46223 1.42414 1.14216 1.34473 1.22462 0.81213 0.90437 0.79315 1.90690 1.35141 1.79880 1.41120 0.94526 0.95619 0.92470 0.93154 0.91029 0.93204 0.95643 0.93069 0.89777 0.89512 0.90768 0.92165 0.87376 0.90856 0.86485 0.76828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.74 71.98 0.63 -5.49 16 2 C 0.20 11.33 1.71 44.17 0.08 11.40 16 3 H -0.02 -1.03 5.82 -2.39 -0.01 -1.05 16 4 C -0.52 -30.81 7.97 25.60 0.20 -30.60 16 5 H 0.06 3.31 6.40 -2.91 -0.02 3.30 16 6 C 0.01 0.34 5.30 84.65 0.45 0.79 16 7 N -0.92 -56.89 11.32 21.45 0.24 -56.64 16 8 Si 0.96 46.50 29.54 68.60 2.03 48.53 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 12 N -0.51 -23.58 4.62 -879.12 -4.06 -27.64 16 13 C 0.03 1.31 8.50 127.69 1.09 2.39 16 14 C 0.07 2.35 1.62 44.42 0.07 2.42 16 15 H 0.11 3.63 4.95 -2.39 -0.01 3.62 16 16 C -0.10 -2.64 3.82 30.22 0.12 -2.53 16 17 C -0.12 -2.01 5.28 29.79 0.16 -1.86 16 18 C -0.13 -1.91 5.74 30.19 0.17 -1.74 16 19 C 0.10 1.70 6.47 86.25 0.56 2.26 16 20 N -0.72 -19.80 5.27 -462.60 -2.44 -22.24 16 21 C 0.48 18.54 6.25 88.11 0.55 19.09 16 22 O -0.59 -29.47 12.64 -3.03 -0.04 -29.51 16 23 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.02 1.13 6.41 -2.39 -0.02 1.12 16 25 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.07 2.65 6.32 -2.39 -0.02 2.63 16 28 H 0.05 2.37 6.39 -2.38 -0.02 2.35 16 29 H 0.03 1.29 5.52 -2.39 -0.01 1.28 16 30 H 0.05 1.42 7.35 -2.39 -0.02 1.41 16 31 H 0.08 2.25 7.99 -2.38 -0.02 2.23 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 34 H 0.06 0.99 8.05 -2.39 -0.02 0.98 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 1.35 6.71 -2.39 -0.02 1.34 16 37 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.40 10.11 8.91 -92.71 -0.83 9.28 16 Total: -1.00 -75.86 281.72 0.04 -75.82 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.24 Total: 15.54 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 4.07 Total: -3.86 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -6.26 Total: -106.52 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.04 Total: -29.51 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -75.86 0.04 -75.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252449460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.534 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds