Wall clock time and date at job start Mon Mar 30 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47198 * 90.00383 * 8 6 4 10 10 H 1.48506 * 109.47350 * 210.00533 * 8 6 4 11 11 H 1.48502 * 109.47345 * 330.00247 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 N 1.46902 * 109.47164 * 179.97438 * 16 15 13 18 18 C 1.48537 * 110.99684 * 52.61008 * 17 16 15 19 19 C 1.54938 * 103.22451 * 159.71829 * 18 17 16 20 20 C 1.54588 * 102.92541 * 322.58149 * 19 18 17 21 21 C 1.47903 * 110.99981 * 169.99889 * 17 16 15 22 22 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 23 23 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 27 27 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 28 28 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 29 29 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 30 30 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 31 31 H 1.08997 * 110.66598 * 278.15246 * 18 17 16 32 32 H 1.09001 * 110.66772 * 41.28165 * 18 17 16 33 33 H 1.09007 * 110.71844 * 204.22581 * 19 18 17 34 34 H 1.09000 * 110.72610 * 80.94916 * 19 18 17 35 35 H 1.08999 * 110.31114 * 263.04561 * 20 19 18 36 36 H 1.09000 * 110.39101 * 140.91482 * 20 19 18 37 37 H 1.09003 * 109.92005 * 333.51452 * 21 17 16 38 38 H 1.09004 * 109.91397 * 94.60685 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 6 2.6849 0.2505 -4.7628 17 7 3.1694 -0.4433 -5.9637 18 6 2.3798 -1.6747 -6.2219 19 6 2.6464 -1.9586 -7.7215 20 6 2.6830 -0.5425 -8.3404 21 6 3.0042 0.4012 -7.1666 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.7083 1.1608 3.4844 26 1 2.2490 -1.6318 -1.1527 27 1 3.6381 -1.1236 -3.4054 28 1 1.9643 -1.5536 -3.8314 29 1 1.6851 0.6431 -4.9481 30 1 3.3591 1.0725 -4.5217 31 1 2.7387 -2.4982 -5.6047 32 1 1.3191 -1.4952 -6.0469 33 1 1.8363 -2.5470 -8.1525 34 1 3.6036 -2.4626 -7.8545 35 1 1.7137 -0.2930 -8.7720 36 1 3.4621 -0.4801 -9.1001 37 1 2.1829 1.1023 -7.0183 38 1 3.9264 0.9469 -7.3666 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259631435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:18 Heat of formation + Delta-G solvation = -69.684651 kcal Electronic energy + Delta-G solvation = -17194.931105 eV Core-core repulsion = 14456.688094 eV Total energy + Delta-G solvation = -2738.243011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77646 -39.61859 -36.76378 -34.42264 -34.20861 -31.38293 -30.03724 -29.36337 -27.35320 -24.97254 -22.93710 -21.75387 -21.60294 -20.91773 -18.88028 -17.67901 -17.19427 -17.01598 -16.42847 -16.34159 -15.87435 -15.21806 -14.68073 -14.60541 -14.38768 -13.81040 -13.76136 -13.40920 -13.04436 -12.88483 -12.78011 -12.72220 -12.31245 -12.27567 -12.24879 -12.11971 -12.02535 -11.86789 -11.39101 -11.12148 -10.73924 -10.57443 -9.75545 -9.43156 -8.18100 -6.35960 1.45179 1.45828 1.56664 1.81946 2.33631 2.55043 3.11710 3.16239 3.71042 3.76949 3.98265 4.05739 4.14222 4.26574 4.39209 4.54359 4.67120 4.71448 4.76049 4.86094 4.90210 4.96580 4.98039 5.00749 5.08390 5.10104 5.22684 5.34423 5.42868 5.61001 5.68160 5.89772 5.94425 5.99569 6.09261 6.72348 6.96592 7.32026 7.56657 8.88386 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056666 B = 0.004083 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.003784 B = 6856.688065 C = 7044.321667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.258 1.258 12 N -0.705 5.705 13 C 0.497 3.503 14 O -0.606 6.606 15 C -0.122 4.122 16 C 0.072 3.928 17 N -0.524 5.524 18 C 0.021 3.979 19 C -0.119 4.119 20 C -0.127 4.127 21 C 0.027 3.973 22 H 0.066 0.934 23 H 0.010 0.990 24 H 0.041 0.959 25 H 0.265 0.735 26 H 0.406 0.594 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 -8.348 -18.136 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.354 5.354 13 C 0.284 3.716 14 O -0.488 6.488 15 C -0.162 4.162 16 C -0.057 4.057 17 N -0.249 5.249 18 C -0.106 4.106 19 C -0.157 4.157 20 C -0.165 4.165 21 C -0.100 4.100 22 H 0.085 0.915 23 H 0.029 0.971 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.242 0.758 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.683 -7.525 -17.922 19.784 hybrid contribution -0.733 0.148 1.062 1.299 sum 2.950 -7.377 -16.861 18.639 Atomic orbital electron populations 1.21891 0.98338 0.99482 0.99473 1.18346 0.91136 0.91913 0.82199 0.98600 1.21564 1.32585 1.13611 0.90786 0.90721 1.25838 0.94842 0.95606 1.02445 1.70056 1.36995 1.24055 1.24630 0.85312 0.77731 0.79228 0.77861 1.20372 1.20960 1.18224 1.46288 1.65136 1.14351 1.09632 1.21353 0.77279 0.87086 0.85883 1.90632 1.53345 1.18641 1.86200 1.21612 1.04748 0.99282 0.90585 1.21810 0.98245 0.95922 0.89684 1.64858 1.52051 1.05900 1.02055 1.23437 0.95840 0.93212 0.98115 1.22490 1.03032 0.96757 0.93418 1.22401 1.02549 0.94546 0.97038 1.22970 1.00892 0.95990 0.90187 0.91545 0.97067 0.93953 0.92546 0.75837 0.86512 0.86823 0.95594 0.91746 0.88790 0.94050 0.89590 0.90232 0.90938 0.89777 0.94576 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 2 C 0.27 14.13 2.56 44.24 0.11 14.24 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.30 11.32 21.45 0.24 -53.06 16 8 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 12 N -0.71 -29.44 5.07 -446.11 -2.26 -31.70 16 13 C 0.50 19.95 7.79 87.66 0.68 20.63 16 14 O -0.61 -30.31 15.65 -3.04 -0.05 -30.35 16 15 C -0.12 -3.37 5.36 29.85 0.16 -3.21 16 16 C 0.07 2.06 4.31 86.30 0.37 2.43 16 17 N -0.52 -12.02 5.40 -882.99 -4.77 -16.79 16 18 C 0.02 0.39 5.10 86.65 0.44 0.83 16 19 C -0.12 -1.67 7.06 31.80 0.22 -1.44 16 20 C -0.13 -1.86 6.93 31.47 0.22 -1.64 16 21 C 0.03 0.55 6.69 86.45 0.58 1.13 16 22 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 23 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 25 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.41 14.00 8.54 -92.71 -0.79 13.21 16 27 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.11 2.54 6.80 -2.39 -0.02 2.52 16 29 H 0.03 0.82 7.77 -2.39 -0.02 0.80 16 30 H 0.06 2.07 8.10 -2.38 -0.02 2.05 16 31 H 0.09 1.53 7.66 -2.39 -0.02 1.51 16 32 H 0.04 0.80 8.00 -2.39 -0.02 0.78 16 33 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 0.79 7.57 -2.39 -0.02 0.77 16 38 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -67.53 306.66 -0.44 -67.97 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.24 Total: 20.88 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.13 Total: -1.07 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -6.78 Total: -101.55 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.53 -0.44 -67.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259631435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.717 kcal (2) G-P(sol) polarization free energy of solvation -67.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds