Wall clock time and date at job start Mon Mar 30 2020 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47511 * 2 1 4 4 C 1.50706 * 109.47198 * 239.99343 * 2 1 3 5 5 H 1.08001 * 119.99887 * 245.47007 * 4 2 1 6 6 C 1.37870 * 119.99557 * 65.46388 * 4 2 1 7 7 N 1.31513 * 120.00298 * 9.55867 * 6 4 2 8 8 Si 1.86799 * 120.00052 * 189.56078 * 6 4 2 9 9 H 1.48496 * 109.47268 * 84.99452 * 8 6 4 10 10 H 1.48502 * 109.47450 * 204.99549 * 8 6 4 11 11 H 1.48506 * 109.46986 * 324.99677 * 8 6 4 12 12 N 1.46505 * 109.46804 * 119.99748 * 2 1 3 13 13 C 1.34767 * 120.00392 * 274.99865 * 12 2 1 14 14 O 1.21282 * 119.99587 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00521 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47282 * 179.97438 * 15 13 12 17 17 N 1.46903 * 109.47165 * 179.97438 * 16 15 13 18 18 C 1.48535 * 110.99806 * 52.60201 * 17 16 15 19 19 C 1.54935 * 103.22458 * 159.72438 * 18 17 16 20 20 C 1.54598 * 102.92309 * 322.58255 * 19 18 17 21 21 C 1.47897 * 110.99875 * 169.99944 * 17 16 15 22 22 H 1.08994 * 109.47289 * 183.67872 * 1 2 3 23 23 H 1.09005 * 109.47080 * 303.68296 * 1 2 3 24 24 H 1.08998 * 109.46604 * 63.67830 * 1 2 3 25 25 H 0.97002 * 120.00352 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99574 * 94.99368 * 12 2 1 27 27 H 1.08998 * 109.46794 * 59.99608 * 15 13 12 28 28 H 1.09004 * 109.46944 * 299.99967 * 15 13 12 29 29 H 1.09004 * 109.47187 * 299.99919 * 16 15 13 30 30 H 1.08998 * 109.47021 * 59.99775 * 16 15 13 31 31 H 1.08998 * 110.66262 * 278.15225 * 18 17 16 32 32 H 1.08992 * 110.66633 * 41.28655 * 18 17 16 33 33 H 1.08997 * 110.72595 * 204.23037 * 19 18 17 34 34 H 1.08998 * 110.72648 * 80.94463 * 19 18 17 35 35 H 1.08992 * 110.31417 * 263.04386 * 20 19 18 36 36 H 1.08997 * 110.39482 * 140.91341 * 20 19 18 37 37 H 1.08996 * 109.92199 * 333.50615 * 21 17 16 38 38 H 1.09001 * 109.91915 * 94.60761 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.5785 -1.6373 -1.1337 6 6 1.7946 -0.1776 -2.4795 7 7 1.2994 1.0354 -2.5935 8 14 2.1759 -1.1783 -4.0100 9 1 1.0239 -2.0612 -4.3239 10 1 2.4227 -0.2618 -5.1521 11 1 3.3844 -2.0077 -3.7708 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0183 2.3572 14 8 1.8590 1.1586 2.4114 15 6 2.6498 -0.7285 3.5876 16 6 2.7018 0.2548 4.7586 17 7 3.1913 -0.4377 5.9581 18 6 4.4724 -1.1375 5.6832 19 6 5.0789 -1.3342 7.0952 20 6 4.6900 -0.0272 7.8237 21 6 3.4819 0.5238 7.0436 22 1 -0.3633 -1.0255 0.0659 23 1 -0.3633 0.5700 0.8552 24 1 -0.3632 0.4557 -0.9211 25 1 1.1325 1.4105 -3.4724 26 1 2.2488 -1.6318 1.1527 27 1 3.6491 -1.1204 3.3980 28 1 1.9775 -1.5508 3.8326 29 1 3.3743 1.0768 4.5132 30 1 1.7026 0.6470 4.9482 31 1 4.2900 -2.1000 5.2054 32 1 5.1244 -0.5183 5.0672 33 1 6.1626 -1.4363 7.0387 34 1 4.6342 -2.1981 7.5891 35 1 5.5160 0.6832 7.7931 36 1 4.4100 -0.2367 8.8561 37 1 3.7260 1.4984 6.6210 38 1 2.6187 0.6110 7.7034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259631438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:21 Heat of formation + Delta-G solvation = -48.990032 kcal Electronic energy + Delta-G solvation = -17187.170076 eV Core-core repulsion = 14449.824451 eV Total energy + Delta-G solvation = -2737.345625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37333 -38.42329 -34.82740 -33.23347 -32.32213 -29.91392 -29.00004 -28.15229 -25.21666 -23.74836 -21.47310 -20.92153 -20.29188 -19.28482 -17.16208 -16.17875 -16.08224 -15.23949 -15.14821 -15.02743 -14.28982 -13.91266 -13.56327 -13.11623 -12.78872 -12.44561 -12.28127 -12.01413 -11.64023 -11.53506 -11.35525 -11.19932 -11.02536 -10.99897 -10.84412 -10.71678 -10.69275 -10.34743 -10.26480 -9.11134 -8.94876 -8.49767 -8.46678 -7.89975 -6.13903 -4.19448 3.25296 3.31842 3.33197 3.44562 3.79332 4.25890 4.42253 4.55057 4.58740 4.83745 5.14538 5.16846 5.19679 5.28719 5.36577 5.53849 5.57868 5.62491 5.67314 5.83115 5.83326 5.86972 6.01788 6.09563 6.18216 6.77224 6.82995 6.91365 6.99496 7.09955 7.45480 7.57321 7.68730 7.86601 8.07999 8.70233 8.80738 9.16633 9.46870 10.94632 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049168 B = 0.004192 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.341918 B = 6678.186167 C = 7003.368582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.501 3.499 14 O -0.559 6.559 15 C -0.141 4.141 16 C 0.065 3.935 17 N -0.520 5.520 18 C 0.029 3.971 19 C -0.124 4.124 20 C -0.131 4.131 21 C 0.034 3.966 22 H 0.028 0.972 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.265 0.735 26 H 0.388 0.612 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 -5.230 16.372 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.357 5.357 13 C 0.286 3.714 14 O -0.438 6.438 15 C -0.182 4.182 16 C -0.064 4.064 17 N -0.245 5.245 18 C -0.099 4.099 19 C -0.162 4.162 20 C -0.169 4.169 21 C -0.094 4.094 22 H 0.047 0.953 23 H 0.038 0.962 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.221 0.779 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.087 -4.586 16.378 17.753 hybrid contribution 0.847 -0.370 -1.264 1.566 sum 5.934 -4.956 15.115 16.977 Atomic orbital electron populations 1.22007 0.98893 0.98576 1.00484 1.18746 0.90568 0.94559 0.80197 0.92757 1.21180 1.37181 1.08647 0.90495 0.92092 1.24895 0.94983 0.94631 0.99054 1.69986 1.43861 1.13749 1.24209 0.86521 0.78722 0.79946 0.82261 1.20407 1.21169 1.19908 1.46512 1.65093 1.13524 1.10594 1.20400 0.78665 0.87510 0.84847 1.90652 1.51603 1.16242 1.85331 1.21700 1.02993 0.99902 0.93591 1.21996 1.01692 0.94687 0.87981 1.64841 1.26639 1.25735 1.07254 1.23291 0.90291 0.99535 0.96787 1.22480 1.00192 0.97977 0.95556 1.22398 0.97559 0.97293 0.99678 1.22862 0.97974 0.94565 0.93968 0.95263 0.96169 0.90932 0.92558 0.77942 0.89602 0.88741 0.93794 0.89808 0.89799 0.93557 0.91213 0.90793 0.91649 0.91134 0.93591 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.36 37.16 0.35 -3.15 16 2 C 0.26 6.74 2.42 -69.08 -0.17 6.57 16 3 H 0.05 1.63 7.52 -51.93 -0.39 1.24 16 4 C -0.54 -14.37 8.66 -34.44 -0.30 -14.66 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.85 5.17 -17.82 -0.09 1.76 16 7 N -0.88 -25.29 12.16 55.43 0.67 -24.62 16 8 Si 0.90 20.72 29.55 -169.99 -5.02 15.70 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.91 5.07 -54.93 -0.28 -15.19 16 13 C 0.50 10.06 7.79 -10.99 -0.09 9.98 16 14 O -0.56 -13.52 15.64 5.56 0.09 -13.44 16 15 C -0.14 -2.06 5.36 -27.88 -0.15 -2.21 16 16 C 0.06 0.93 4.32 -3.82 -0.02 0.92 16 17 N -0.52 -6.36 5.40 -230.46 -1.24 -7.61 16 18 C 0.03 0.30 5.10 -1.90 -0.01 0.29 16 19 C -0.12 -1.06 7.06 -24.87 -0.18 -1.24 16 20 C -0.13 -1.12 6.93 -25.37 -0.18 -1.30 16 21 C 0.03 0.37 6.70 -2.75 -0.02 0.35 16 22 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.94 6.83 -51.93 -0.35 1.58 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.39 7.00 8.53 -40.82 -0.35 6.65 16 27 H 0.09 1.11 6.80 -51.93 -0.35 0.75 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.04 0.69 7.77 -51.93 -0.40 0.28 16 30 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.08 0.83 7.67 -51.93 -0.40 0.43 16 32 H 0.05 0.51 8.00 -51.93 -0.42 0.09 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.51 7.57 -51.93 -0.39 0.11 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -30.77 307.96 -8.38 -39.15 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.40 Total: 4.06 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -0.84 Total: -2.70 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.85 Total: -47.42 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.77 -8.38 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259631438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.836 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds