Wall clock time and date at job start Mon Mar 30 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21288 * 119.99704 * 2 1 4 4 N 1.34774 * 120.00146 * 180.02562 * 2 1 3 5 5 C 1.47597 * 118.64564 * 359.97438 * 4 2 1 6 6 C 1.53948 * 112.14552 * 137.87030 * 5 4 2 7 7 C 1.50887 * 110.09269 * 319.43506 * 6 5 4 8 8 C 1.52568 * 109.35893 * 91.88409 * 7 6 5 9 9 H 1.09002 * 108.51546 * 36.08913 * 8 7 6 10 10 N 1.46906 * 108.51219 * 153.73631 * 8 7 6 11 11 C 1.46898 * 110.99888 * 204.99909 * 10 8 7 12 12 C 1.50705 * 109.46661 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00458 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99662 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00400 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00094 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46657 * 89.99635 * 16 14 12 18 18 H 1.48493 * 109.47462 * 209.99859 * 16 14 12 19 19 H 1.48501 * 109.47005 * 330.00227 * 16 14 12 20 20 C 1.47090 * 114.32592 * 274.98656 * 8 7 6 21 21 C 1.44577 * 118.63983 * 179.97438 * 4 2 1 22 22 H 1.08997 * 109.47155 * 239.99589 * 1 2 3 23 23 H 1.08994 * 109.47389 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.47314 * 119.99926 * 1 2 3 25 25 H 1.09006 * 108.94680 * 17.17988 * 5 4 2 26 26 H 1.09002 * 108.94443 * 258.55803 * 5 4 2 27 27 H 1.08993 * 109.36787 * 199.24724 * 6 5 4 28 28 H 1.08992 * 109.26517 * 79.55857 * 6 5 4 29 29 H 1.09002 * 109.49078 * 331.91586 * 7 6 5 30 30 H 1.09003 * 109.50639 * 211.86276 * 7 6 5 31 31 H 1.00902 * 110.99923 * 328.95850 * 10 8 7 32 32 H 1.08995 * 109.47296 * 299.99911 * 11 10 8 33 33 H 1.08997 * 109.47334 * 60.00212 * 11 10 8 34 34 H 0.96997 * 120.00478 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.32875 * 183.06724 * 20 8 7 36 36 H 1.09003 * 109.33276 * 302.54599 * 20 8 7 37 37 H 1.09005 * 109.45356 * 30.77224 * 21 4 2 38 38 H 1.09003 * 109.44988 * 150.71089 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4129 -2.4276 -0.0005 6 6 2.0137 -3.4732 -0.9575 7 6 2.4635 -2.8085 -2.2352 8 6 3.9293 -2.4052 -2.1066 9 1 4.4483 -3.1674 -1.5253 10 7 4.5209 -2.3627 -3.4506 11 6 5.9739 -2.5709 -3.3930 12 6 6.5443 -2.5201 -4.7870 13 1 5.8926 -2.3504 -5.6313 14 6 7.8981 -2.6911 -4.9846 15 7 8.6917 -2.8982 -3.9565 16 14 8.6051 -2.6288 -6.7125 17 1 8.9856 -1.2316 -7.0414 18 1 9.8055 -3.4996 -6.7879 19 1 7.5860 -3.1055 -7.6818 20 6 4.1446 -1.1017 -1.4601 21 6 3.6262 -1.1328 -0.0011 22 1 -0.3633 -0.5139 0.8899 23 1 -0.3634 1.0276 0.0005 24 1 -0.3634 -0.5139 -0.8900 25 1 0.3875 -2.2173 -0.3046 26 1 1.4038 -2.8364 1.0099 27 1 1.2610 -4.2270 -1.1879 28 1 2.8683 -3.9504 -0.4781 29 1 1.8568 -1.9214 -2.4168 30 1 2.3491 -3.5037 -3.0669 31 1 4.0828 -3.0370 -4.0601 32 1 6.4293 -1.7887 -2.7857 33 1 6.1842 -3.5441 -2.9493 34 1 9.6442 -3.0182 -4.0954 35 1 5.2098 -0.8708 -1.4597 36 1 3.6111 -0.3307 -2.0161 37 1 3.9684 -0.2414 0.5249 38 1 4.0106 -2.0205 0.5014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259882355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:20 Heat of formation + Delta-G solvation = -64.736176 kcal Electronic energy + Delta-G solvation = -17817.847457 eV Core-core repulsion = 15079.819028 eV Total energy + Delta-G solvation = -2738.028429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37107 -39.15548 -36.75639 -34.95100 -33.68709 -32.84250 -30.52718 -28.56959 -27.15701 -25.48423 -23.90444 -22.51602 -21.29992 -19.68339 -18.64314 -17.97579 -17.41480 -16.81902 -16.73189 -16.18896 -15.54462 -15.28722 -14.79573 -14.52346 -14.48306 -14.02527 -13.75819 -13.55318 -13.29594 -13.26104 -12.90250 -12.78293 -12.76108 -12.29322 -12.27107 -11.91917 -11.87771 -11.70191 -11.44033 -11.17757 -10.80320 -10.67362 -9.63364 -9.11855 -8.24929 -6.36524 1.38741 1.41265 1.52231 1.65884 2.13471 2.37970 3.08135 3.39530 3.70116 3.73622 3.96195 4.11109 4.17192 4.30061 4.37439 4.49892 4.54567 4.60114 4.67911 4.71781 4.79033 4.90991 5.04109 5.04924 5.14085 5.17636 5.21488 5.28932 5.31672 5.41067 5.60499 5.69220 6.02093 6.44160 6.46169 6.73125 6.89366 7.22889 7.34776 8.86724 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.004955 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.895742 B = 5649.642128 C = 5852.467903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.493 3.507 3 O -0.605 6.605 4 N -0.603 5.603 5 C 0.103 3.897 6 C -0.128 4.128 7 C -0.105 4.105 8 C 0.091 3.909 9 H 0.017 0.983 10 N -0.694 5.694 11 C 0.212 3.788 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.261 1.261 20 C -0.110 4.110 21 C 0.126 3.874 22 H 0.118 0.882 23 H 0.085 0.915 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.335 0.665 32 H -0.005 1.005 33 H -0.040 1.040 34 H 0.265 0.735 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.504 -2.647 9.183 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.284 3.716 3 O -0.487 6.487 4 N -0.335 5.335 5 C -0.017 4.017 6 C -0.166 4.166 7 C -0.143 4.143 8 C -0.019 4.019 9 H 0.035 0.965 10 N -0.326 5.326 11 C 0.084 3.916 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.798 3.202 17 H -0.201 1.201 18 H -0.204 1.204 19 H -0.185 1.185 20 C -0.149 4.149 21 C 0.001 3.999 22 H 0.136 0.864 23 H 0.104 0.896 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.013 0.987 33 H -0.023 1.023 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.960 -1.501 9.231 21.141 hybrid contribution 1.420 -0.679 -0.626 1.694 sum -17.540 -2.180 8.604 19.658 Atomic orbital electron populations 1.21984 0.87913 1.05958 1.06454 1.21845 0.92729 0.82636 0.74435 1.90699 1.72375 1.33281 1.52362 1.47935 1.05915 1.07473 1.72128 1.22361 0.96069 0.82342 1.00969 1.21769 1.02320 0.98187 0.94349 1.21188 0.93184 1.00797 0.99158 1.20537 0.95938 0.95666 0.89729 0.96476 1.60688 1.04893 1.56407 1.10594 1.19188 0.84449 0.92045 0.95900 1.21569 0.93335 1.49000 0.93723 0.91884 1.25974 0.97393 0.94476 1.01859 1.70092 1.04865 1.50069 1.32429 0.85316 0.77882 0.78160 0.78833 1.20097 1.20430 1.18549 1.21022 0.99807 0.97685 0.96388 1.21184 0.81031 1.02576 0.95081 0.86351 0.89633 0.87063 0.86671 0.89242 0.87069 0.92184 0.91677 0.91158 0.84699 0.98653 1.02257 0.92589 0.94177 0.93620 0.91620 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.65 71.24 0.62 -1.55 16 2 C 0.49 12.53 7.73 87.66 0.68 13.21 16 3 O -0.61 -22.38 16.52 -3.06 -0.05 -22.43 16 4 N -0.60 -13.80 2.24 -818.16 -1.83 -15.63 16 5 C 0.10 1.36 5.95 86.49 0.51 1.88 16 6 C -0.13 -2.08 5.71 30.23 0.17 -1.90 16 7 C -0.11 -2.62 5.08 29.76 0.15 -2.47 16 8 C 0.09 3.24 2.00 42.93 0.09 3.33 16 9 H 0.02 0.65 6.98 -2.39 -0.02 0.64 16 10 N -0.69 -31.06 6.23 -505.95 -3.15 -34.22 16 11 C 0.21 11.81 5.19 85.56 0.44 12.25 16 12 C -0.54 -31.74 9.32 25.60 0.24 -31.50 16 13 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 16 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.11 -4.11 5.16 29.40 0.15 -3.96 16 21 C 0.13 3.71 5.38 87.38 0.47 4.18 16 22 H 0.12 0.81 8.03 -2.39 -0.02 0.79 16 23 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 24 H 0.11 0.99 7.41 -2.38 -0.02 0.97 16 25 H 0.12 0.81 5.82 -2.38 -0.01 0.80 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.13 7.31 -2.39 -0.02 1.11 16 29 H 0.06 1.65 7.48 -2.39 -0.02 1.63 16 30 H 0.07 1.70 7.44 -2.39 -0.02 1.68 16 31 H 0.34 13.93 7.89 -89.69 -0.71 13.23 16 32 H 0.00 -0.28 6.91 -2.39 -0.02 -0.30 16 33 H -0.04 -2.38 8.03 -2.39 -0.02 -2.40 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.04 1.76 6.83 -2.39 -0.02 1.75 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.15 7.30 -2.38 -0.02 2.13 16 38 H 0.09 2.29 8.06 -2.39 -0.02 2.27 16 Total: -1.00 -77.15 298.93 1.59 -75.55 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.33 Total: 12.98 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.98 Total: -6.02 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.70 Total: -107.40 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -77.15 1.59 -75.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259882355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.818 kcal (2) G-P(sol) polarization free energy of solvation -77.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds