Wall clock time and date at job start Mon Mar 30 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 120.00289 * 2 1 4 4 N 1.34774 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.47607 * 118.64442 * 174.50742 * 4 2 1 6 6 C 1.53945 * 112.14697 * 222.16126 * 5 4 2 7 7 C 1.50884 * 110.09363 * 40.55859 * 6 5 4 8 8 C 1.52568 * 109.34581 * 268.11646 * 7 6 5 9 9 H 1.09007 * 108.51006 * 323.92771 * 8 7 6 10 10 N 1.46896 * 108.50899 * 206.28484 * 8 7 6 11 11 C 1.46898 * 111.00172 * 154.99753 * 10 8 7 12 12 C 1.50700 * 109.47167 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00218 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99739 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00554 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99701 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47336 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46782 * 120.00559 * 16 14 12 19 19 H 1.48497 * 109.47187 * 240.00339 * 16 14 12 20 20 C 1.47042 * 114.31635 * 85.02819 * 8 7 6 21 21 C 1.44576 * 118.64305 * 354.52659 * 4 2 1 22 22 H 1.08994 * 109.47174 * 184.85990 * 1 2 3 23 23 H 1.09002 * 109.46966 * 304.86403 * 1 2 3 24 24 H 1.08998 * 109.46915 * 64.85819 * 1 2 3 25 25 H 1.09005 * 108.94685 * 342.84235 * 5 4 2 26 26 H 1.08999 * 108.95208 * 101.55638 * 5 4 2 27 27 H 1.08996 * 109.36559 * 160.74787 * 6 5 4 28 28 H 1.08997 * 109.36441 * 280.36685 * 6 5 4 29 29 H 1.09001 * 109.49005 * 28.07376 * 7 6 5 30 30 H 1.08997 * 109.49348 * 148.12980 * 7 6 5 31 31 H 1.00896 * 111.00514 * 31.04258 * 10 8 7 32 32 H 1.08997 * 109.47546 * 299.99965 * 11 10 8 33 33 H 1.09005 * 109.46868 * 60.00182 * 11 10 8 34 34 H 0.96996 * 120.00507 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.29230 * 176.91438 * 20 8 7 36 36 H 1.09003 * 109.33699 * 57.45103 * 20 8 7 37 37 H 1.09002 * 109.45034 * 209.30460 * 21 4 2 38 38 H 1.09001 * 109.45182 * 329.24903 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6513 -1.1353 -0.1235 6 6 4.1771 -2.2245 -1.0759 7 6 3.2735 -2.3418 -2.2786 8 6 2.2081 -3.4001 -2.0090 9 1 2.6575 -4.2021 -1.4232 10 7 1.7664 -3.9553 -3.2952 11 6 1.2301 -5.3124 -3.1265 12 6 0.7876 -5.8476 -4.4640 13 1 0.8945 -5.2405 -5.3507 14 6 0.2472 -7.1127 -4.5556 15 7 0.1174 -7.8523 -3.4760 16 14 -0.3007 -7.7764 -6.2137 17 1 -0.0487 -6.7563 -7.2630 18 1 0.4629 -9.0102 -6.5297 19 1 -1.7513 -8.0906 -6.1663 20 6 1.0289 -2.9016 -1.2857 21 6 1.4335 -2.3988 0.1221 22 1 -0.3633 -1.0239 0.0871 23 1 -0.3633 0.5875 0.8432 24 1 -0.3633 0.4366 -0.9303 25 1 3.9535 -0.1587 -0.5016 26 1 4.0930 -1.2851 0.8617 27 1 5.1832 -1.9629 -1.4039 28 1 4.2068 -3.1796 -0.5515 29 1 2.7930 -1.3818 -2.4673 30 1 3.8622 -2.6313 -3.1490 31 1 2.5160 -3.9442 -3.9705 32 1 2.0034 -5.9600 -2.7135 33 1 0.3783 -5.2845 -2.4469 34 1 -0.2624 -8.7424 -3.5405 35 1 0.3009 -3.7065 -1.1859 36 1 0.5814 -2.0813 -1.8470 37 1 2.0511 -3.1512 0.6126 38 1 0.5366 -2.2221 0.7159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259882357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:23 Heat of formation + Delta-G solvation = -38.456398 kcal Electronic energy + Delta-G solvation = -17846.026433 eV Core-core repulsion = 15109.137580 eV Total energy + Delta-G solvation = -2736.888853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33094 -37.91431 -35.25460 -33.44738 -32.70597 -30.66422 -29.61490 -27.08304 -25.67633 -24.36587 -22.19592 -21.04148 -20.04586 -18.73359 -17.12492 -16.43700 -16.27608 -15.67116 -14.88989 -14.61215 -14.32273 -14.08450 -13.70963 -13.45136 -13.00292 -12.47535 -12.40367 -12.20155 -12.14188 -11.83550 -11.62187 -11.40909 -11.17312 -10.92588 -10.80834 -10.55479 -10.43226 -10.18600 -9.83044 -9.69775 -9.16613 -8.61243 -8.50389 -7.32152 -6.06755 -4.08397 2.62510 3.05632 3.28578 3.36138 3.41280 4.39906 4.55502 4.81346 4.90402 4.95138 5.06674 5.19300 5.20455 5.29611 5.37667 5.39093 5.57853 5.65243 5.74231 5.76410 5.81966 5.97833 6.02277 6.08099 6.28671 6.40317 6.47812 6.68452 6.71936 7.22520 7.38534 7.40724 7.76802 8.10332 8.18101 8.37467 8.58953 9.01569 9.56962 11.04342 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040191 B = 0.005023 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.501896 B = 5572.959422 C = 5821.848965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.510 3.490 3 O -0.558 6.558 4 N -0.602 5.602 5 C 0.114 3.886 6 C -0.131 4.131 7 C -0.114 4.114 8 C 0.089 3.911 9 H 0.027 0.973 10 N -0.691 5.691 11 C 0.194 3.806 12 C -0.513 4.513 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.124 4.124 21 C 0.105 3.895 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.329 0.671 32 H -0.015 1.015 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 10.702 8.219 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.299 3.701 3 O -0.437 6.437 4 N -0.335 5.335 5 C -0.008 4.008 6 C -0.169 4.169 7 C -0.152 4.152 8 C -0.021 4.021 9 H 0.045 0.955 10 N -0.322 5.322 11 C 0.067 3.933 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.163 4.163 21 C -0.019 4.019 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.002 0.998 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.459 11.335 8.307 14.473 hybrid contribution 0.425 -1.252 -0.726 1.508 sum 3.884 10.083 7.581 13.200 Atomic orbital electron populations 1.22058 0.91965 1.05033 1.05020 1.20879 0.90756 0.83258 0.75160 1.90671 1.70824 1.31452 1.50759 1.47786 1.07075 1.06527 1.72092 1.21796 0.79135 1.00692 0.99192 1.21766 0.99423 0.99047 0.96712 1.21255 0.96672 1.00139 0.97146 1.20329 0.93731 0.95276 0.92744 0.95463 1.60810 1.37696 1.26629 1.07072 1.19598 0.94230 0.82058 0.97384 1.21239 1.40527 0.99452 0.93996 0.91980 1.24983 0.95925 0.96847 0.96786 1.69961 1.45577 1.10371 1.27901 0.86446 0.78286 0.78756 0.83961 1.19664 1.21107 1.20977 1.21285 0.98927 1.01996 0.94101 1.21764 0.96295 0.85810 0.98060 0.89489 0.89253 0.88625 0.89575 0.92277 0.90749 0.91468 0.91554 0.91714 0.85407 0.99764 0.95373 0.92974 0.90025 0.91190 0.90408 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.69 36.00 0.35 -1.47 16 2 C 0.51 6.89 7.71 -10.99 -0.08 6.80 16 3 O -0.56 -9.52 16.42 5.55 0.09 -9.43 16 4 N -0.60 -7.45 2.24 -172.53 -0.39 -7.84 16 5 C 0.11 1.34 6.07 -2.94 -0.02 1.32 16 6 C -0.13 -1.50 5.71 -27.30 -0.16 -1.66 16 7 C -0.11 -1.59 5.08 -28.01 -0.14 -1.73 16 8 C 0.09 1.47 2.00 -70.79 -0.14 1.33 16 9 H 0.03 0.48 6.98 -51.93 -0.36 0.12 16 10 N -0.69 -14.24 6.23 -111.30 -0.69 -14.93 16 11 C 0.19 4.91 5.19 -4.98 -0.03 4.89 16 12 C -0.51 -14.32 9.32 -34.44 -0.32 -14.64 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 16 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 C -0.12 -1.83 4.89 -28.60 -0.14 -1.97 16 21 C 0.10 1.20 4.99 -4.08 -0.02 1.18 16 22 H 0.09 0.77 5.20 -51.93 -0.27 0.50 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.09 1.12 7.02 -51.93 -0.36 0.75 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.77 7.31 -51.93 -0.38 0.39 16 29 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 30 H 0.06 0.90 7.44 -51.93 -0.39 0.51 16 31 H 0.33 6.60 7.89 -39.29 -0.31 6.29 16 32 H -0.02 -0.42 8.03 -51.93 -0.42 -0.84 16 33 H 0.03 0.76 6.91 -51.93 -0.36 0.40 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.08 1.35 6.83 -51.93 -0.35 0.99 16 36 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 37 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 38 H 0.08 0.78 5.99 -51.93 -0.31 0.47 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -31.66 296.88 -7.57 -39.23 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.97 Total: 2.21 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.80 Total: -4.48 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.34 Total: -48.43 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.66 -7.57 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259882357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.773 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds